Wall clock time and date at job start Tue Mar 31 2020 10:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34754 * 116.99863 * 2 1 4 4 O 1.21513 * 120.00334 * 0.02562 * 3 2 1 5 5 C 1.47413 * 120.00024 * 180.02562 * 3 2 1 6 6 C 1.40210 * 120.87631 * 179.97438 * 5 3 2 7 7 N 1.31916 * 119.00324 * 180.02562 * 6 5 3 8 8 C 1.32716 * 120.90225 * 359.97438 * 7 6 5 9 9 N 1.37992 * 119.03014 * 179.97438 * 8 7 6 10 10 C 1.36902 * 119.99749 * 353.97913 * 9 8 7 11 11 H 1.08006 * 119.99108 * 132.58815 * 10 9 8 12 12 C 1.38912 * 120.00350 * 312.58788 * 10 9 8 13 13 N 1.31480 * 119.99811 * 162.59212 * 12 10 9 14 14 Si 1.86793 * 120.00071 * 342.59436 * 12 10 9 15 15 H 1.48502 * 109.47507 * 93.86647 * 14 12 10 16 16 H 1.48504 * 109.47050 * 213.86606 * 14 12 10 17 17 H 1.48500 * 109.47424 * 333.86777 * 14 12 10 18 18 C 1.46499 * 119.99573 * 173.98350 * 9 8 7 19 19 C 1.50696 * 109.47376 * 269.99572 * 18 9 8 20 20 C 1.38230 * 120.00188 * 269.73526 * 19 18 9 21 21 C 1.38241 * 119.99914 * 179.76506 * 20 19 18 22 22 C 1.38230 * 119.99985 * 0.50105 * 21 20 19 23 23 C 1.38234 * 119.99964 * 359.74874 * 22 21 20 24 24 C 1.38233 * 120.00152 * 359.97438 * 23 22 21 25 25 N 1.32715 * 121.93802 * 0.25802 * 8 7 6 26 26 C 1.31919 * 120.90301 * 359.47551 * 25 8 7 27 27 H 1.09004 * 109.47390 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47188 * 299.99783 * 1 2 3 29 29 H 1.09006 * 109.47332 * 60.00075 * 1 2 3 30 30 H 1.08004 * 120.50332 * 359.97438 * 6 5 3 31 31 H 0.97005 * 119.99553 * 179.97438 * 13 12 10 32 32 H 1.09002 * 109.47099 * 29.99960 * 18 9 8 33 33 H 1.09003 * 109.46937 * 149.99748 * 18 9 8 34 34 H 1.08001 * 120.00064 * 359.97438 * 20 19 18 35 35 H 1.07998 * 119.99851 * 180.23220 * 21 20 19 36 36 H 1.07998 * 119.99954 * 179.72835 * 22 21 20 37 37 H 1.07999 * 120.00062 * 179.97438 * 23 22 21 38 38 H 1.08003 * 120.00188 * 179.97438 * 24 23 22 39 39 H 1.07999 * 120.50085 * 180.23023 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2007 0.0000 4 8 1.4019 2.2198 0.0005 5 6 3.5358 1.2779 -0.0006 6 6 4.1913 2.5173 -0.0011 7 7 5.5103 2.5433 -0.0021 8 6 6.2141 1.4182 -0.0021 9 7 7.5922 1.4904 -0.0038 10 6 8.2138 2.7036 -0.1297 11 1 9.0200 2.9691 0.5383 12 6 7.8078 3.5931 -1.1165 13 7 8.1443 4.8616 -1.0369 14 14 6.7838 2.9869 -2.5563 15 1 5.3425 3.1785 -2.2541 16 1 7.1403 3.7558 -3.7757 17 1 7.0543 1.5446 -2.7838 18 6 8.3898 0.2688 0.1292 19 6 8.6572 -0.0004 1.5876 20 6 9.7868 0.5202 2.1908 21 6 10.0296 0.2773 3.5298 22 6 9.1481 -0.4947 4.2631 23 6 8.0211 -1.0196 3.6587 24 6 7.7754 -0.7720 2.3211 25 7 5.6317 0.2256 -0.0062 26 6 4.3173 0.1136 -0.0001 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 3.6251 3.4370 -0.0015 31 1 7.8611 5.4826 -1.7262 32 1 7.8433 -0.5706 -0.3010 33 1 9.3363 0.3939 -0.3967 34 1 10.4780 1.1195 1.6167 35 1 10.9102 0.6872 4.0020 36 1 9.3400 -0.6881 5.3082 37 1 7.3326 -1.6232 4.2315 38 1 6.8951 -1.1824 1.8487 39 1 3.8502 -0.8602 0.0003 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166994063.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:54 Heat of formation + Delta-G solvation = 3.664848 kcal Electronic energy + Delta-G solvation = -25595.712339 eV Core-core repulsion = 21890.034152 eV Total energy + Delta-G solvation = -3705.678187 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.07061 -40.98706 -40.07089 -37.96919 -37.31391 -34.88850 -34.22134 -33.06557 -31.80673 -31.67381 -28.60601 -28.00255 -26.59101 -25.06174 -24.10978 -23.37816 -22.40670 -21.83140 -20.39194 -19.13714 -18.28969 -18.07172 -17.67314 -17.29840 -17.25031 -16.95089 -16.17153 -15.96156 -15.71937 -15.55167 -15.02890 -14.88362 -14.60786 -14.29069 -14.26216 -14.17724 -14.07101 -13.37763 -13.28397 -13.02147 -12.99213 -12.72977 -12.46411 -12.23708 -12.14144 -11.78553 -11.72432 -11.60860 -11.29195 -11.22502 -10.81064 -9.90615 -9.74650 -9.65534 -9.07147 -8.58132 -6.23940 -0.29530 0.40296 0.44588 0.57524 1.20375 1.25886 1.28183 1.62687 1.80754 2.14620 2.17836 2.80327 3.02158 3.14227 3.41733 3.77229 3.86314 3.95960 3.99137 4.03542 4.22440 4.33529 4.35379 4.40051 4.41075 4.41608 4.66144 4.76840 4.81198 4.82021 4.88117 5.15437 5.22442 5.28520 5.36512 5.59836 5.62794 5.65447 5.78904 5.81784 6.09954 6.18538 6.50371 6.81408 6.91149 7.08966 7.63800 8.50169 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.010991 B = 0.005702 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.928415 B = 4909.650829 C = 6847.451723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.356 6.356 3 C 0.540 3.460 4 O -0.555 6.555 5 C -0.361 4.361 6 C 0.244 3.756 7 N -0.581 5.581 8 C 0.513 3.487 9 N -0.402 5.402 10 C -0.323 4.323 11 H 0.083 0.917 12 C 0.077 3.923 13 N -0.879 5.879 14 Si 0.929 3.071 15 H -0.270 1.270 16 H -0.287 1.287 17 H -0.273 1.273 18 C 0.152 3.848 19 C -0.109 4.109 20 C -0.116 4.116 21 C -0.132 4.132 22 C -0.122 4.122 23 C -0.132 4.132 24 C -0.110 4.110 25 N -0.589 5.589 26 C 0.259 3.741 27 H 0.137 0.863 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.163 0.837 31 H 0.280 0.720 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.116 0.884 35 H 0.140 0.860 36 H 0.148 0.852 37 H 0.143 0.857 38 H 0.126 0.874 39 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.896 -14.493 5.107 16.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.272 6.272 3 C 0.387 3.613 4 O -0.447 6.447 5 C -0.374 4.374 6 C 0.069 3.931 7 N -0.304 5.304 8 C 0.162 3.838 9 N -0.094 5.094 10 C -0.451 4.451 11 H 0.101 0.899 12 C -0.132 4.132 13 N -0.513 5.513 14 Si 0.756 3.244 15 H -0.195 1.195 16 H -0.214 1.214 17 H -0.198 1.198 18 C 0.030 3.970 19 C -0.110 4.110 20 C -0.135 4.135 21 C -0.150 4.150 22 C -0.140 4.140 23 C -0.150 4.150 24 C -0.128 4.128 25 N -0.313 5.313 26 C 0.085 3.915 27 H 0.155 0.845 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.180 0.820 31 H 0.090 0.910 32 H 0.115 0.885 33 H 0.108 0.892 34 H 0.135 0.865 35 H 0.158 0.842 36 H 0.166 0.834 37 H 0.161 0.839 38 H 0.144 0.856 39 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -4.592 -13.936 5.006 15.504 hybrid contribution -1.476 0.768 -0.880 1.882 sum -6.068 -13.169 4.126 15.075 Atomic orbital electron populations 1.23555 0.74480 1.05799 1.02375 1.86504 1.25044 1.31325 1.84351 1.20475 0.87910 0.81483 0.71426 1.90776 1.67256 1.37096 1.49589 1.20113 0.91312 0.97185 1.28779 1.23090 0.88728 0.97564 0.83708 1.68136 1.07657 1.30896 1.23747 1.19990 0.88216 0.85000 0.90583 1.42457 0.98854 1.07325 1.60801 1.18764 1.18443 0.91787 1.16143 0.89912 1.25702 0.94533 0.94293 0.98666 1.69805 1.44260 1.02831 1.34408 0.86080 0.80565 0.78491 0.79302 1.19523 1.21381 1.19829 1.20763 0.96197 0.86769 0.93302 1.20229 0.95838 0.98628 0.96321 1.21256 0.97369 0.98770 0.96059 1.21401 1.00717 0.99201 0.93681 1.21479 0.94377 0.97283 1.00848 1.21436 0.98286 1.00727 0.94515 1.21304 0.98603 0.97981 0.94947 1.67989 1.12683 1.24702 1.25970 1.23676 0.87114 0.98890 0.81835 0.84466 0.92086 0.92286 0.81958 0.90988 0.88485 0.89164 0.86548 0.84233 0.83447 0.83936 0.85561 0.77394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.57 113.37 1.20 1.75 16 2 O -0.36 -9.07 9.91 -56.64 -0.56 -9.63 16 3 C 0.54 17.80 7.90 70.24 0.56 18.35 16 4 O -0.55 -20.93 16.23 19.79 0.32 -20.61 16 5 C -0.36 -13.03 5.91 -19.90 -0.12 -13.15 16 6 C 0.24 10.36 10.11 85.16 0.86 11.22 16 7 N -0.58 -28.25 6.30 -196.95 -1.24 -29.49 16 8 C 0.51 23.44 6.11 261.50 1.60 25.04 16 9 N -0.40 -18.63 2.11 -528.42 -1.12 -19.75 16 10 C -0.32 -17.14 9.54 84.06 0.80 -16.33 16 11 H 0.08 4.70 8.06 -2.91 -0.02 4.67 16 12 C 0.08 4.22 4.80 84.91 0.41 4.62 16 13 N -0.88 -50.37 13.96 21.66 0.30 -50.07 16 14 Si 0.93 45.80 25.04 68.60 1.72 47.51 16 15 H -0.27 -13.55 5.87 99.48 0.58 -12.97 16 16 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 17 H -0.27 -13.34 7.11 99.48 0.71 -12.63 16 18 C 0.15 5.74 5.55 85.63 0.48 6.21 16 19 C -0.11 -3.78 5.46 -19.87 -0.11 -3.88 16 20 C -0.12 -3.80 9.70 22.27 0.22 -3.59 16 21 C -0.13 -3.61 10.05 22.27 0.22 -3.39 16 22 C -0.12 -2.99 10.05 22.27 0.22 -2.76 16 23 C -0.13 -3.44 10.05 22.27 0.22 -3.22 16 24 C -0.11 -3.43 9.70 22.27 0.22 -3.21 16 25 N -0.59 -22.71 8.61 -196.94 -1.70 -24.40 16 26 C 0.26 8.44 10.90 85.16 0.93 9.37 16 27 H 0.14 1.35 8.14 -2.38 -0.02 1.33 16 28 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 30 H 0.16 6.61 7.74 -2.91 -0.02 6.59 16 31 H 0.28 15.13 8.31 -92.70 -0.77 14.36 16 32 H 0.10 3.43 7.17 -2.39 -0.02 3.41 16 33 H 0.09 3.26 7.98 -2.39 -0.02 3.24 16 34 H 0.12 3.86 8.06 -2.91 -0.02 3.83 16 35 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 36 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 37 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 38 H 0.13 3.86 7.63 -2.91 -0.02 3.84 16 39 H 0.21 4.81 7.70 -2.91 -0.02 4.79 16 Total: -1.00 -67.72 339.86 6.38 -61.34 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 0.95 Total: 18.05 kcal Atomic # 6 Polarization: 19.34 SS G_CDS: 7.70 Total: 27.04 kcal Atomic # 7 Polarization: -119.96 SS G_CDS: -3.75 Total: -123.71 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -0.24 Total: -30.24 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.72 Total: 47.51 kcal Total: -67.72 6.38 -61.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166994063.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.005 kcal (2) G-P(sol) polarization free energy of solvation -67.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds