Wall clock time and date at job start Tue Mar 31 2020 10:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.46933 * 2 1 4 4 C 1.35694 * 117.00108 * 180.02562 * 3 2 1 5 5 C 1.39227 * 120.08079 * 180.02562 * 4 3 2 6 6 C 1.39877 * 117.75902 * 179.97438 * 5 4 3 7 7 C 1.48112 * 121.12154 * 179.97438 * 6 5 4 8 8 O 1.21528 * 120.00073 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00277 * 180.27477 * 7 6 5 10 10 C 1.39851 * 120.00393 * 174.59242 * 9 7 6 11 11 C 1.39311 * 119.95072 * 146.35341 * 10 9 7 12 12 C 1.38476 * 120.42680 * 179.97438 * 11 10 9 13 13 C 1.37692 * 120.32421 * 0.02562 * 12 11 10 14 14 C 1.40744 * 119.89146 * 359.97438 * 13 12 11 15 15 C 1.41402 * 120.20918 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00251 * 151.79580 * 15 14 13 17 17 C 1.39937 * 120.00105 * 331.78480 * 15 14 13 18 18 N 1.30831 * 119.99977 * 348.99943 * 17 15 14 19 19 Si 1.86799 * 119.99893 * 168.99478 * 17 15 14 20 20 H 1.48497 * 109.47072 * 90.00286 * 19 17 15 21 21 H 1.48504 * 109.46942 * 210.00280 * 19 17 15 22 22 H 1.48497 * 109.47236 * 330.00163 * 19 17 15 23 23 C 1.38269 * 119.94929 * 326.07439 * 10 9 7 24 24 C 1.39905 * 117.75647 * 0.27380 * 6 5 4 25 25 N 1.31771 * 119.78029 * 359.43475 * 24 6 5 26 26 N 1.28268 * 122.41595 * 0.59432 * 25 24 6 27 27 H 1.08997 * 109.47719 * 60.00098 * 1 2 3 28 28 H 1.09006 * 109.46743 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47340 * 299.99326 * 1 2 3 30 30 H 1.09002 * 109.46844 * 240.00690 * 2 1 3 31 31 H 1.08996 * 109.47299 * 120.00227 * 2 1 3 32 32 H 1.08002 * 121.12083 * 359.95123 * 5 4 3 33 33 H 0.96998 * 119.99875 * 354.59734 * 9 7 6 34 34 H 1.07995 * 119.78616 * 359.97438 * 11 10 9 35 35 H 1.08001 * 119.83946 * 180.02562 * 12 11 10 36 36 H 1.08006 * 120.05526 * 179.97438 * 13 12 11 37 37 H 0.97002 * 119.99900 * 179.97438 * 18 17 15 38 38 H 1.08000 * 120.16200 * 0.02562 * 23 10 9 39 39 H 1.08002 * 120.11310 * 179.72424 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3516 1.5252 -0.0005 5 6 3.8855 2.8110 0.0000 6 6 5.2784 2.9380 -0.0001 7 6 5.9257 4.2702 -0.0001 8 8 5.2445 5.2767 0.0003 9 7 7.2700 4.3664 -0.0058 10 6 7.8810 5.6192 -0.1200 11 6 9.0872 5.8667 0.5317 12 6 9.7010 7.1033 0.4250 13 6 9.1251 8.1028 -0.3268 14 6 7.9067 7.8675 -0.9909 15 6 7.3095 8.8889 -1.7651 16 1 6.6796 8.6323 -2.6041 17 6 7.5344 10.2323 -1.4442 18 7 8.1126 10.5468 -0.3135 19 14 7.0093 11.5764 -2.6303 20 1 5.6180 11.9934 -2.3213 21 1 7.9181 12.7426 -2.4907 22 1 7.0744 11.0619 -4.0218 23 6 7.2900 6.6083 -0.8842 24 6 6.0397 1.7642 -0.0065 25 7 5.4364 0.5928 -0.0010 26 7 4.1589 0.4773 -0.0010 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.2456 3.6811 0.0000 33 1 7.8137 3.5667 0.0693 34 1 9.5464 5.0891 1.1240 35 1 10.6362 7.2848 0.9339 36 1 9.6074 9.0659 -0.4067 37 1 8.2688 11.4780 -0.0913 38 1 6.3571 6.4162 -1.3932 39 1 7.1184 1.8180 -0.0113 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194457180.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:18:06 Heat of formation + Delta-G solvation = 9.994527 kcal Electronic energy + Delta-G solvation = -24177.003807 eV Core-core repulsion = 20471.600096 eV Total energy + Delta-G solvation = -3705.403711 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.60974 -39.85672 -38.77937 -37.28320 -34.70637 -33.61763 -33.18242 -32.61959 -30.96081 -29.89072 -28.48368 -25.81737 -25.32889 -24.65801 -23.39031 -21.80748 -20.99102 -20.18279 -18.93796 -18.14400 -17.85280 -16.95465 -16.83058 -16.13877 -15.55630 -15.31980 -15.08676 -14.70089 -14.61257 -14.40335 -14.17985 -13.63965 -13.19013 -13.08221 -13.02722 -12.90896 -12.23606 -12.02692 -11.81892 -11.67501 -11.39091 -11.32836 -11.14461 -10.80111 -10.56876 -10.47559 -10.42341 -10.05385 -9.86659 -9.63757 -9.43513 -9.25991 -9.01251 -7.49724 -7.01991 -6.71774 -4.40126 0.09090 0.64946 2.38665 2.49375 2.77662 3.03374 3.07913 3.12045 3.18137 3.22671 3.54186 3.80003 3.94831 3.98454 4.37224 4.46825 4.61146 4.62661 4.63332 4.75866 4.99817 5.21164 5.28983 5.45272 5.54530 5.62089 5.65076 5.70148 6.15666 6.29488 6.54161 6.70980 6.86039 6.94532 7.00714 7.20740 7.41578 7.61198 7.85993 7.99060 8.02270 8.13779 8.29815 8.41848 8.61670 8.88338 8.91099 10.21916 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.019009 B = 0.002781 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.604830 B =10066.133829 C =11296.901198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.297 6.297 4 C 0.266 3.734 5 C -0.075 4.075 6 C -0.087 4.087 7 C 0.549 3.451 8 O -0.493 6.493 9 N -0.652 5.652 10 C 0.144 3.856 11 C -0.255 4.255 12 C -0.093 4.093 13 C -0.164 4.164 14 C 0.118 3.882 15 C -0.456 4.456 16 H 0.077 0.923 17 C 0.073 3.927 18 N -0.799 5.799 19 Si 0.912 3.088 20 H -0.270 1.270 21 H -0.276 1.276 22 H -0.261 1.261 23 C -0.206 4.206 24 C 0.036 3.964 25 N -0.204 5.204 26 N -0.293 5.293 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.171 0.829 33 H 0.400 0.600 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.123 0.877 37 H 0.280 0.720 38 H 0.107 0.893 39 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.179 -16.250 0.854 17.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.014 4.014 3 O -0.201 6.201 4 C 0.081 3.919 5 C -0.106 4.106 6 C -0.101 4.101 7 C 0.333 3.667 8 O -0.366 6.366 9 N -0.297 5.297 10 C 0.053 3.947 11 C -0.276 4.276 12 C -0.112 4.112 13 C -0.184 4.184 14 C 0.115 3.885 15 C -0.486 4.486 16 H 0.095 0.905 17 C -0.144 4.144 18 N -0.425 5.425 19 Si 0.736 3.264 20 H -0.195 1.195 21 H -0.201 1.201 22 H -0.185 1.185 23 C -0.228 4.228 24 C -0.132 4.132 25 N -0.045 5.045 26 N -0.151 5.151 27 H 0.086 0.914 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.188 0.812 33 H 0.235 0.765 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.141 0.859 37 H 0.091 0.909 38 H 0.125 0.875 39 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -7.791 -16.783 0.980 18.529 hybrid contribution -0.036 1.571 -0.275 1.595 sum -7.827 -15.212 0.705 17.122 Atomic orbital electron populations 1.21829 0.92500 1.03137 1.03620 1.22789 0.95279 0.80356 1.03008 1.86272 1.15254 1.31320 1.87250 1.21291 0.86110 0.91425 0.93067 1.21715 0.94658 0.97271 0.96963 1.21224 0.93879 0.95781 0.99218 1.17814 0.82865 0.87369 0.78662 1.90894 1.62936 1.36180 1.46592 1.43260 1.05433 1.09462 1.71496 1.17385 0.94127 0.83920 0.99228 1.20054 0.99287 0.98491 1.09769 1.20496 0.98386 0.93083 0.99275 1.21449 0.96167 0.98831 1.01928 1.17502 0.90086 0.90816 0.90089 1.19546 1.26278 0.90089 1.12698 0.90489 1.25895 0.93342 1.00164 0.94971 1.69793 1.32706 1.20169 1.19858 0.86255 0.79161 0.79631 0.81332 1.19481 1.20131 1.18532 1.20981 1.01411 0.95107 1.05282 1.24407 1.02506 0.88564 0.97757 1.72765 1.01161 1.23090 1.07527 1.72879 0.99361 1.27251 1.15567 0.91424 0.90000 0.91436 0.91097 0.91108 0.81161 0.76510 0.89037 0.88811 0.85944 0.90923 0.87519 0.80342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 10.28 37.16 0.38 -0.55 16 2 C 0.06 0.51 6.05 37.16 0.22 0.74 16 3 O -0.30 -3.37 10.13 -18.79 -0.19 -3.56 16 4 C 0.27 3.36 7.57 -16.99 -0.13 3.23 16 5 C -0.08 -0.99 9.72 -38.60 -0.38 -1.36 16 6 C -0.09 -1.17 5.92 -104.61 -0.62 -1.79 16 7 C 0.55 9.35 7.53 -12.21 -0.09 9.26 16 8 O -0.49 -10.56 14.20 5.34 0.08 -10.49 16 9 N -0.65 -10.77 5.29 -10.69 -0.06 -10.83 16 10 C 0.14 3.10 6.26 -83.79 -0.52 2.57 16 11 C -0.25 -5.31 9.97 -39.10 -0.39 -5.70 16 12 C -0.09 -2.09 10.02 -39.69 -0.40 -2.49 16 13 C -0.16 -4.18 8.66 -38.83 -0.34 -4.51 16 14 C 0.12 3.16 5.55 -106.85 -0.59 2.56 16 15 C -0.46 -12.23 9.06 -37.74 -0.34 -12.58 16 16 H 0.08 2.00 7.87 -52.49 -0.41 1.59 16 17 C 0.07 1.85 5.25 -17.34 -0.09 1.76 16 18 N -0.80 -20.74 10.81 55.55 0.60 -20.14 16 19 Si 0.91 18.89 29.57 -169.99 -5.03 13.86 16 20 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 21 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 22 H -0.26 -5.35 7.11 56.52 0.40 -4.94 16 23 C -0.21 -5.14 8.39 -38.68 -0.32 -5.46 16 24 C 0.04 0.40 10.84 -16.95 -0.18 0.22 16 25 N -0.20 -2.62 11.48 30.79 0.35 -2.26 16 26 N -0.29 -3.83 10.38 30.48 0.32 -3.52 16 27 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.58 8.11 -51.93 -0.42 0.16 16 31 H 0.07 0.58 8.11 -51.93 -0.42 0.16 16 32 H 0.17 2.17 7.79 -52.49 -0.41 1.76 16 33 H 0.40 4.81 6.99 -40.82 -0.29 4.52 16 34 H 0.09 1.62 8.06 -52.49 -0.42 1.19 16 35 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 36 H 0.12 3.21 6.18 -52.48 -0.32 2.89 16 37 H 0.28 6.60 8.30 -40.82 -0.34 6.27 16 38 H 0.11 2.72 6.44 -52.49 -0.34 2.38 16 39 H 0.18 1.43 6.54 -52.49 -0.34 1.08 16 LS Contribution 341.12 15.07 5.14 5.14 Total: -1.00 -31.04 341.12 -6.78 -37.83 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -4.20 Total: 8.07 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: -3.79 Total: -14.11 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: 1.21 Total: -36.74 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -0.11 Total: -14.04 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.03 Total: 13.86 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.04 -6.78 -37.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194457180.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.821 kcal (2) G-P(sol) polarization free energy of solvation -31.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds