Wall clock time and date at job start Tue Mar 31 2020 10:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.46933 * 2 1 4 4 C 1.35694 * 117.00108 * 180.02562 * 3 2 1 5 5 C 1.39227 * 120.08079 * 180.02562 * 4 3 2 6 6 C 1.39877 * 117.75902 * 179.97438 * 5 4 3 7 7 C 1.48112 * 121.12154 * 179.97438 * 6 5 4 8 8 O 1.21528 * 120.00073 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00277 * 180.27477 * 7 6 5 10 10 C 1.39851 * 120.00393 * 174.59242 * 9 7 6 11 11 C 1.39311 * 119.95072 * 146.35341 * 10 9 7 12 12 C 1.38476 * 120.42680 * 179.97438 * 11 10 9 13 13 C 1.37692 * 120.32421 * 0.02562 * 12 11 10 14 14 C 1.40744 * 119.89146 * 359.97438 * 13 12 11 15 15 C 1.41402 * 120.20918 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00251 * 151.79580 * 15 14 13 17 17 C 1.39937 * 120.00105 * 331.78480 * 15 14 13 18 18 N 1.30831 * 119.99977 * 348.99943 * 17 15 14 19 19 Si 1.86799 * 119.99893 * 168.99478 * 17 15 14 20 20 H 1.48497 * 109.47072 * 90.00286 * 19 17 15 21 21 H 1.48504 * 109.46942 * 210.00280 * 19 17 15 22 22 H 1.48497 * 109.47236 * 330.00163 * 19 17 15 23 23 C 1.38269 * 119.94929 * 326.07439 * 10 9 7 24 24 C 1.39905 * 117.75647 * 0.27380 * 6 5 4 25 25 N 1.31771 * 119.78029 * 359.43475 * 24 6 5 26 26 N 1.28268 * 122.41595 * 0.59432 * 25 24 6 27 27 H 1.08997 * 109.47719 * 60.00098 * 1 2 3 28 28 H 1.09006 * 109.46743 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47340 * 299.99326 * 1 2 3 30 30 H 1.09002 * 109.46844 * 240.00690 * 2 1 3 31 31 H 1.08996 * 109.47299 * 120.00227 * 2 1 3 32 32 H 1.08002 * 121.12083 * 359.95123 * 5 4 3 33 33 H 0.96998 * 119.99875 * 354.59734 * 9 7 6 34 34 H 1.07995 * 119.78616 * 359.97438 * 11 10 9 35 35 H 1.08001 * 119.83946 * 180.02562 * 12 11 10 36 36 H 1.08006 * 120.05526 * 179.97438 * 13 12 11 37 37 H 0.97002 * 119.99900 * 179.97438 * 18 17 15 38 38 H 1.08000 * 120.16200 * 0.02562 * 23 10 9 39 39 H 1.08002 * 120.11310 * 179.72424 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3516 1.5252 -0.0005 5 6 3.8855 2.8110 0.0000 6 6 5.2784 2.9380 -0.0001 7 6 5.9257 4.2702 -0.0001 8 8 5.2445 5.2767 0.0003 9 7 7.2700 4.3664 -0.0058 10 6 7.8810 5.6192 -0.1200 11 6 9.0872 5.8667 0.5317 12 6 9.7010 7.1033 0.4250 13 6 9.1251 8.1028 -0.3268 14 6 7.9067 7.8675 -0.9909 15 6 7.3095 8.8889 -1.7651 16 1 6.6796 8.6323 -2.6041 17 6 7.5344 10.2323 -1.4442 18 7 8.1126 10.5468 -0.3135 19 14 7.0093 11.5764 -2.6303 20 1 5.6180 11.9934 -2.3213 21 1 7.9181 12.7426 -2.4907 22 1 7.0744 11.0619 -4.0218 23 6 7.2900 6.6083 -0.8842 24 6 6.0397 1.7642 -0.0065 25 7 5.4364 0.5928 -0.0010 26 7 4.1589 0.4773 -0.0010 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.2456 3.6811 0.0000 33 1 7.8137 3.5667 0.0693 34 1 9.5464 5.0891 1.1240 35 1 10.6362 7.2848 0.9339 36 1 9.6074 9.0659 -0.4067 37 1 8.2688 11.4780 -0.0913 38 1 6.3571 6.4162 -1.3932 39 1 7.1184 1.8180 -0.0113 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194457180.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:18:05 Heat of formation + Delta-G solvation = -11.259275 kcal Electronic energy + Delta-G solvation = -24177.925441 eV Core-core repulsion = 20471.600096 eV Total energy + Delta-G solvation = -3706.325345 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.64955 -41.26001 -39.72341 -39.00149 -36.36865 -35.06594 -34.49943 -33.55159 -31.77404 -31.73700 -30.14806 -27.32390 -26.87359 -25.64218 -24.26596 -23.21325 -22.72538 -21.68416 -20.10337 -19.47269 -19.25764 -18.03634 -17.68679 -17.53517 -17.08802 -16.90457 -16.52039 -16.30724 -15.67844 -15.58467 -15.41800 -14.94871 -14.65598 -14.61206 -13.99697 -13.81849 -13.63180 -13.52280 -13.14124 -12.84637 -12.69593 -12.65482 -12.54964 -12.22904 -12.10179 -11.99968 -11.62317 -11.56892 -11.51440 -11.16407 -10.90748 -10.70010 -10.35257 -9.37252 -8.78162 -8.58719 -6.38457 -1.00537 -0.30863 0.85256 0.98789 1.36871 1.46296 1.47261 1.51380 1.66748 1.95361 2.21734 2.37724 2.75571 2.82043 3.01378 3.30201 3.42888 3.70206 3.73049 4.03638 4.03767 4.30598 4.39457 4.45803 4.50116 4.62451 4.64969 4.86131 4.91767 4.93858 5.09355 5.10845 5.17238 5.20139 5.32363 5.69310 5.80892 5.86716 6.07413 6.09799 6.32001 6.41997 6.67877 6.92350 6.98372 7.06861 7.31601 8.36812 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.019009 B = 0.002781 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.604830 B =10066.133829 C =11296.901198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 O -0.305 6.305 4 C 0.267 3.733 5 C -0.077 4.077 6 C -0.090 4.090 7 C 0.554 3.446 8 O -0.543 6.543 9 N -0.638 5.638 10 C 0.153 3.847 11 C -0.239 4.239 12 C -0.093 4.093 13 C -0.190 4.190 14 C 0.085 3.915 15 C -0.500 4.500 16 H 0.066 0.934 17 C 0.032 3.968 18 N -0.831 5.831 19 Si 0.983 3.017 20 H -0.267 1.267 21 H -0.261 1.261 22 H -0.260 1.260 23 C -0.231 4.231 24 C 0.053 3.947 25 N -0.214 5.214 26 N -0.296 5.296 27 H 0.065 0.935 28 H 0.105 0.895 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.167 0.833 33 H 0.425 0.575 34 H 0.139 0.861 35 H 0.125 0.875 36 H 0.106 0.894 37 H 0.287 0.713 38 H 0.088 0.912 39 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.614 -18.289 1.443 19.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.021 4.021 3 O -0.209 6.209 4 C 0.081 3.919 5 C -0.108 4.108 6 C -0.104 4.104 7 C 0.341 3.659 8 O -0.419 6.419 9 N -0.284 5.284 10 C 0.060 3.940 11 C -0.259 4.259 12 C -0.112 4.112 13 C -0.210 4.210 14 C 0.083 3.917 15 C -0.530 4.530 16 H 0.084 0.916 17 C -0.181 4.181 18 N -0.457 5.457 19 Si 0.804 3.196 20 H -0.192 1.192 21 H -0.185 1.185 22 H -0.183 1.183 23 C -0.252 4.252 24 C -0.114 4.114 25 N -0.055 5.055 26 N -0.154 5.154 27 H 0.084 0.916 28 H 0.123 0.877 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.185 0.815 33 H 0.265 0.735 34 H 0.156 0.844 35 H 0.143 0.857 36 H 0.124 0.876 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -7.208 -18.897 1.580 20.287 hybrid contribution -0.235 1.990 -0.374 2.038 sum -7.443 -16.907 1.206 18.513 Atomic orbital electron populations 1.21860 0.90638 1.04622 1.03481 1.23070 0.96733 0.79051 1.03243 1.86288 1.14515 1.33174 1.86962 1.21261 0.86692 0.90909 0.93020 1.21789 0.94841 0.97658 0.96532 1.20842 0.93967 0.94408 1.01150 1.18236 0.82652 0.88079 0.76970 1.90886 1.64011 1.38340 1.48677 1.43047 1.05611 1.08810 1.70954 1.17409 0.94153 0.84944 0.97507 1.20526 0.98282 0.98856 1.08283 1.20877 0.99324 0.92882 0.98122 1.21413 0.96388 0.99343 1.03805 1.17842 0.91045 0.91762 0.91081 1.19751 1.27982 0.91675 1.13570 0.91555 1.26708 0.93079 1.01854 0.96488 1.69845 1.33673 1.21058 1.21169 0.85195 0.78890 0.76730 0.78809 1.19187 1.18538 1.18349 1.20962 1.01305 0.96031 1.06940 1.24839 1.03905 0.87025 0.95665 1.72778 1.01107 1.23497 1.08158 1.72848 0.99686 1.27457 1.15411 0.91593 0.87673 0.91524 0.90892 0.90799 0.81538 0.73475 0.84351 0.85700 0.87615 0.90221 0.89384 0.76691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 10.28 71.98 0.74 -0.83 16 2 C 0.05 0.83 6.05 71.98 0.44 1.27 16 3 O -0.30 -6.67 10.13 -90.13 -0.91 -7.59 16 4 C 0.27 6.45 7.57 84.86 0.64 7.09 16 5 C -0.08 -1.98 9.72 22.90 0.22 -1.76 16 6 C -0.09 -2.27 5.92 -19.86 -0.12 -2.39 16 7 C 0.55 18.45 7.53 86.87 0.65 19.10 16 8 O -0.54 -23.87 14.20 -3.80 -0.05 -23.92 16 9 N -0.64 -19.63 5.29 -306.01 -1.62 -21.25 16 10 C 0.15 6.35 6.26 38.13 0.24 6.59 16 11 C -0.24 -9.22 9.97 22.58 0.23 -9.00 16 12 C -0.09 -4.03 10.02 22.20 0.22 -3.81 16 13 C -0.19 -9.88 8.66 22.75 0.20 -9.68 16 14 C 0.09 4.77 5.55 -21.31 -0.12 4.65 16 15 C -0.50 -28.33 9.06 23.46 0.21 -28.12 16 16 H 0.07 3.71 7.87 -2.91 -0.02 3.69 16 17 C 0.03 1.69 5.25 85.25 0.45 2.14 16 18 N -0.83 -44.56 10.81 21.82 0.24 -44.32 16 19 Si 0.98 39.84 29.57 68.60 2.03 41.87 16 20 H -0.27 -10.60 7.11 99.48 0.71 -9.90 16 21 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 22 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 23 C -0.23 -11.86 8.39 22.86 0.19 -11.66 16 24 C 0.05 1.06 10.84 85.11 0.92 1.98 16 25 N -0.21 -4.96 11.48 -56.50 -0.65 -5.60 16 26 N -0.30 -7.23 10.38 -170.31 -1.77 -9.00 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.71 16 28 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.07 1.10 8.11 -2.39 -0.02 1.09 16 31 H 0.07 1.10 8.11 -2.39 -0.02 1.08 16 32 H 0.17 4.35 7.79 -2.91 -0.02 4.32 16 33 H 0.43 8.49 6.99 -92.71 -0.65 7.84 16 34 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 35 H 0.13 4.56 8.06 -2.91 -0.02 4.53 16 36 H 0.11 5.77 6.18 -2.91 -0.02 5.75 16 37 H 0.29 13.89 8.30 -92.71 -0.77 13.12 16 38 H 0.09 4.75 6.44 -2.91 -0.02 4.73 16 39 H 0.22 2.43 6.54 -2.91 -0.02 2.41 16 Total: -1.00 -71.09 341.12 2.84 -68.25 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: 0.46 Total: 26.00 kcal Atomic # 6 Polarization: -29.55 SS G_CDS: 5.12 Total: -24.44 kcal Atomic # 7 Polarization: -76.38 SS G_CDS: -3.80 Total: -80.18 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -0.97 Total: -31.51 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 2.03 Total: 41.87 kcal Total: -71.09 2.84 -68.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194457180.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.993 kcal (2) G-P(sol) polarization free energy of solvation -71.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds