Wall clock time and date at job start Tue Mar 31 2020 10:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46500 * 120.00193 * 2 1 4 4 C 1.34779 * 119.99759 * 180.02562 * 2 1 3 5 5 O 1.21540 * 120.00226 * 354.35163 * 4 2 1 6 6 C 1.47968 * 119.99818 * 174.36064 * 4 2 1 7 7 C 1.39952 * 120.06393 * 173.55086 * 6 4 2 8 8 C 1.38427 * 118.01242 * 179.72655 * 7 6 4 9 9 C 1.39841 * 117.99920 * 0.47793 * 8 7 6 10 10 C 1.48039 * 120.07883 * 179.78041 * 9 8 7 11 11 C 1.39437 * 120.17205 * 359.73277 * 10 9 8 12 12 C 1.37933 * 119.93416 * 179.97438 * 11 10 9 13 13 C 1.38502 * 120.29399 * 359.97438 * 12 11 10 14 14 C 1.38075 * 120.35188 * 0.02562 * 13 12 11 15 15 C 1.38779 * 120.05965 * 0.02562 * 14 13 12 16 16 O 1.35616 * 120.14751 * 179.97438 * 15 14 13 17 17 C 1.34802 * 116.99475 * 354.79625 * 16 15 14 18 18 H 1.07997 * 120.00572 * 5.27614 * 17 16 15 19 19 C 1.38685 * 119.99496 * 185.27543 * 17 16 15 20 20 N 1.31531 * 120.00350 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99595 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47312 * 0.02562 * 21 19 17 23 23 H 1.48509 * 109.46710 * 120.00163 * 21 19 17 24 24 H 1.48496 * 109.47149 * 239.99686 * 21 19 17 25 25 N 1.33087 * 119.84693 * 359.51462 * 9 8 7 26 26 N 1.28359 * 122.12496 * 0.24481 * 25 9 8 27 27 H 1.08998 * 109.47098 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47275 * 299.99417 * 1 2 3 29 29 H 1.08996 * 109.47449 * 59.99988 * 1 2 3 30 30 H 1.08995 * 109.46975 * 265.33518 * 3 2 1 31 31 H 1.08995 * 109.46695 * 25.33464 * 3 2 1 32 32 H 1.08996 * 109.47261 * 145.33327 * 3 2 1 33 33 H 1.07996 * 120.99750 * 359.95497 * 7 6 4 34 34 H 1.07996 * 121.00163 * 180.26543 * 8 7 6 35 35 H 1.08004 * 120.03172 * 359.94782 * 11 10 9 36 36 H 1.08003 * 119.85502 * 179.97438 * 12 11 10 37 37 H 1.08001 * 119.81885 * 179.74524 * 13 12 11 38 38 H 1.07998 * 119.96864 * 179.97438 * 14 13 12 39 39 H 0.97001 * 120.00281 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1389 -1.1673 -0.0005 5 8 1.5356 -2.2173 0.1026 6 6 3.6132 -1.1703 -0.1264 7 6 4.3258 -2.3673 0.0079 8 6 5.7031 -2.3222 -0.1235 9 6 6.2986 -1.0816 -0.3723 10 6 7.7684 -0.9796 -0.5160 11 6 8.5648 -2.1181 -0.3985 12 6 9.9338 -2.0175 -0.5338 13 6 10.5225 -0.7896 -0.7867 14 6 9.7454 0.3455 -0.9054 15 6 8.3667 0.2613 -0.7708 16 8 7.6017 1.3751 -0.8865 17 6 8.2484 2.5498 -1.0250 18 1 9.3235 2.5659 -1.1255 19 6 7.5328 3.7377 -1.0384 20 7 6.2233 3.7182 -0.9165 21 14 8.4288 5.3656 -1.2310 22 1 9.8879 5.1164 -1.3504 23 1 7.9434 6.0562 -2.4528 24 1 8.1672 6.2181 -0.0436 25 7 5.5404 0.0064 -0.4848 26 7 4.2629 -0.0368 -0.3678 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 2.4516 1.5415 -1.0242 31 1 1.5748 2.0477 0.4397 32 1 3.1112 1.1607 0.5845 33 1 3.8162 -3.2989 0.2044 34 1 6.3001 -3.2176 -0.0332 35 1 8.1101 -3.0777 -0.2013 36 1 10.5494 -2.9001 -0.4421 37 1 11.5955 -0.7190 -0.8872 38 1 10.2109 1.2999 -1.1022 39 1 5.7229 4.5491 -0.9255 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243586094.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:07 Heat of formation + Delta-G solvation = 53.317595 kcal Electronic energy + Delta-G solvation = -25394.568015 eV Core-core repulsion = 21691.042933 eV Total energy + Delta-G solvation = -3703.525082 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.75427 -39.38177 -38.72496 -36.53359 -35.45601 -33.20608 -32.63519 -32.32990 -29.82244 -29.01240 -27.69166 -26.30192 -25.56389 -24.28193 -23.97200 -21.60736 -21.06124 -19.97996 -18.12157 -17.62557 -17.23985 -16.80323 -15.80550 -15.79968 -15.62655 -14.78066 -14.50966 -14.36216 -14.19221 -14.10591 -13.62751 -13.48390 -13.27710 -12.94167 -12.64871 -12.58931 -12.29114 -12.24350 -11.91142 -11.77669 -11.53775 -11.14693 -11.01716 -10.83932 -10.64376 -10.50386 -9.93808 -9.78995 -9.69772 -9.39688 -8.96222 -8.93961 -8.53882 -8.07326 -7.25783 -6.53244 -4.08160 0.65165 1.30232 2.05324 2.27037 3.03034 3.07142 3.08178 3.10150 3.13250 3.86284 4.08001 4.25427 4.56394 4.71438 4.87657 4.94958 5.01370 5.11210 5.20766 5.36615 5.44466 5.44880 5.52455 5.55631 5.69589 5.78147 5.92625 5.96927 6.05752 6.09295 6.33427 6.39569 6.48944 6.54013 6.66165 6.74004 6.95923 7.06186 7.21278 7.25326 7.40138 7.63884 7.85037 8.18375 8.86199 9.26637 9.56911 10.58593 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.010984 B = 0.005211 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.493141 B = 5372.423271 C = 7893.423073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.604 5.604 3 C 0.086 3.914 4 C 0.582 3.418 5 O -0.549 6.549 6 C -0.030 4.030 7 C -0.067 4.067 8 C -0.142 4.142 9 C 0.154 3.846 10 C -0.159 4.159 11 C -0.040 4.040 12 C -0.226 4.226 13 C -0.054 4.054 14 C -0.234 4.234 15 C 0.174 3.826 16 O -0.113 6.113 17 C -0.397 4.397 18 H 0.094 0.906 19 C 0.047 3.953 20 N -0.818 5.818 21 Si 0.938 3.062 22 H -0.266 1.266 23 H -0.275 1.275 24 H -0.275 1.275 25 N -0.192 5.192 26 N -0.185 5.185 27 H 0.084 0.916 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.098 0.902 33 H 0.151 0.849 34 H 0.149 0.851 35 H 0.116 0.884 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.132 0.868 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.371 -6.561 1.747 7.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.336 5.336 3 C -0.057 4.057 4 C 0.369 3.631 5 O -0.426 6.426 6 C -0.175 4.175 7 C -0.095 4.095 8 C -0.171 4.171 9 C 0.016 3.984 10 C -0.163 4.163 11 C -0.059 4.059 12 C -0.245 4.245 13 C -0.073 4.073 14 C -0.253 4.253 15 C 0.114 3.886 16 O -0.010 6.010 17 C -0.473 4.473 18 H 0.111 0.889 19 C -0.162 4.162 20 N -0.448 5.448 21 Si 0.762 3.238 22 H -0.190 1.190 23 H -0.200 1.200 24 H -0.200 1.200 25 N -0.038 5.038 26 N -0.034 5.034 27 H 0.103 0.897 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.116 0.884 33 H 0.168 0.832 34 H 0.166 0.834 35 H 0.134 0.866 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.149 0.851 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.334 -5.208 1.545 6.374 hybrid contribution 0.669 -0.615 0.095 0.914 sum -2.665 -5.823 1.640 6.610 Atomic orbital electron populations 1.21709 0.79217 1.03921 1.01384 1.47627 1.06983 1.07112 1.71891 1.22208 0.96919 0.82574 1.03987 1.17705 0.85626 0.83545 0.76262 1.90719 1.69050 1.31332 1.51542 1.22550 0.95533 0.93197 1.06220 1.22061 0.93877 0.98936 0.94645 1.22261 0.94701 0.99203 1.00919 1.21616 0.95344 0.90257 0.91224 1.17308 0.88541 0.92553 1.17882 1.20710 0.93460 0.95793 0.95927 1.20468 0.94179 0.97394 1.12434 1.20909 0.98651 0.92397 0.95311 1.21168 0.93414 0.99627 1.11124 1.19321 0.89727 0.87818 0.91747 1.84186 1.32718 1.11777 1.72276 1.21578 0.92852 0.81277 1.51602 0.88855 1.25347 0.95765 0.98834 0.96284 1.70133 1.05370 1.28149 1.41161 0.85701 0.79269 0.80406 0.78396 1.19032 1.20027 1.20019 1.74119 0.97094 1.23493 1.09111 1.73840 1.03172 1.21747 1.04594 0.89709 0.92149 0.92064 0.91318 0.92160 0.88369 0.83157 0.83368 0.86580 0.87123 0.87152 0.85076 0.91871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.95 10.66 59.85 0.64 1.59 16 2 N -0.60 -9.37 3.27 -190.61 -0.62 -10.00 16 3 C 0.09 1.34 9.17 59.85 0.55 1.89 16 4 C 0.58 10.29 7.65 -12.27 -0.09 10.20 16 5 O -0.55 -10.30 15.74 5.33 0.08 -10.21 16 6 C -0.03 -0.56 6.64 -82.80 -0.55 -1.11 16 7 C -0.07 -1.08 9.71 -38.87 -0.38 -1.46 16 8 C -0.14 -2.29 9.53 -38.91 -0.37 -2.66 16 9 C 0.15 3.14 6.81 -82.70 -0.56 2.58 16 10 C -0.16 -3.24 5.89 -104.74 -0.62 -3.86 16 11 C -0.04 -0.65 9.42 -39.25 -0.37 -1.02 16 12 C -0.23 -3.55 10.03 -39.60 -0.40 -3.94 16 13 C -0.05 -0.91 10.03 -39.54 -0.40 -1.30 16 14 C -0.23 -4.75 9.16 -39.44 -0.36 -5.11 16 15 C 0.17 4.01 6.65 -38.69 -0.26 3.75 16 16 O -0.11 -3.01 7.62 0.54 0.00 -3.01 16 17 C -0.40 -10.37 9.49 30.90 0.29 -10.08 16 18 H 0.09 2.25 5.20 -52.49 -0.27 1.97 16 19 C 0.05 1.20 5.49 -17.52 -0.10 1.10 16 20 N -0.82 -22.20 13.67 55.48 0.76 -21.45 16 21 Si 0.94 19.24 29.55 -169.99 -5.02 14.22 16 22 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 23 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 24 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 25 N -0.19 -4.45 9.35 33.37 0.31 -4.14 16 26 N -0.19 -3.90 7.38 33.34 0.25 -3.65 16 27 H 0.08 1.05 6.91 -51.93 -0.36 0.69 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 1.15 8.02 -51.93 -0.42 0.74 16 31 H 0.06 0.77 8.04 -51.93 -0.42 0.35 16 32 H 0.10 1.79 5.74 -51.93 -0.30 1.49 16 33 H 0.15 2.06 7.72 -52.49 -0.41 1.66 16 34 H 0.15 1.81 6.28 -52.49 -0.33 1.48 16 35 H 0.12 1.51 6.23 -52.48 -0.33 1.18 16 36 H 0.11 1.41 8.06 -52.48 -0.42 0.98 16 37 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 38 H 0.13 2.62 5.63 -52.49 -0.30 2.33 16 39 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 334.76 15.07 5.04 5.04 Total: -1.00 -30.95 334.76 -6.12 -37.07 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -3.95 Total: 5.58 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -2.97 Total: -9.44 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 0.69 Total: -39.24 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.09 Total: -13.22 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.02 Total: 14.22 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.95 -6.12 -37.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243586094.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.383 kcal (2) G-P(sol) polarization free energy of solvation -30.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds