Wall clock time and date at job start Tue Mar 31 2020 10:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46500 * 120.00193 * 2 1 4 4 C 1.34779 * 119.99759 * 180.02562 * 2 1 3 5 5 O 1.21540 * 120.00226 * 354.35163 * 4 2 1 6 6 C 1.47968 * 119.99818 * 174.36064 * 4 2 1 7 7 C 1.39952 * 120.06393 * 173.55086 * 6 4 2 8 8 C 1.38427 * 118.01242 * 179.72655 * 7 6 4 9 9 C 1.39841 * 117.99920 * 0.47793 * 8 7 6 10 10 C 1.48039 * 120.07883 * 179.78041 * 9 8 7 11 11 C 1.39437 * 120.17205 * 359.73277 * 10 9 8 12 12 C 1.37933 * 119.93416 * 179.97438 * 11 10 9 13 13 C 1.38502 * 120.29399 * 359.97438 * 12 11 10 14 14 C 1.38075 * 120.35188 * 0.02562 * 13 12 11 15 15 C 1.38779 * 120.05965 * 0.02562 * 14 13 12 16 16 O 1.35616 * 120.14751 * 179.97438 * 15 14 13 17 17 C 1.34802 * 116.99475 * 354.79625 * 16 15 14 18 18 H 1.07997 * 120.00572 * 5.27614 * 17 16 15 19 19 C 1.38685 * 119.99496 * 185.27543 * 17 16 15 20 20 N 1.31531 * 120.00350 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99595 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47312 * 0.02562 * 21 19 17 23 23 H 1.48509 * 109.46710 * 120.00163 * 21 19 17 24 24 H 1.48496 * 109.47149 * 239.99686 * 21 19 17 25 25 N 1.33087 * 119.84693 * 359.51462 * 9 8 7 26 26 N 1.28359 * 122.12496 * 0.24481 * 25 9 8 27 27 H 1.08998 * 109.47098 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47275 * 299.99417 * 1 2 3 29 29 H 1.08996 * 109.47449 * 59.99988 * 1 2 3 30 30 H 1.08995 * 109.46975 * 265.33518 * 3 2 1 31 31 H 1.08995 * 109.46695 * 25.33464 * 3 2 1 32 32 H 1.08996 * 109.47261 * 145.33327 * 3 2 1 33 33 H 1.07996 * 120.99750 * 359.95497 * 7 6 4 34 34 H 1.07996 * 121.00163 * 180.26543 * 8 7 6 35 35 H 1.08004 * 120.03172 * 359.94782 * 11 10 9 36 36 H 1.08003 * 119.85502 * 179.97438 * 12 11 10 37 37 H 1.08001 * 119.81885 * 179.74524 * 13 12 11 38 38 H 1.07998 * 119.96864 * 179.97438 * 14 13 12 39 39 H 0.97001 * 120.00281 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1389 -1.1673 -0.0005 5 8 1.5356 -2.2173 0.1026 6 6 3.6132 -1.1703 -0.1264 7 6 4.3258 -2.3673 0.0079 8 6 5.7031 -2.3222 -0.1235 9 6 6.2986 -1.0816 -0.3723 10 6 7.7684 -0.9796 -0.5160 11 6 8.5648 -2.1181 -0.3985 12 6 9.9338 -2.0175 -0.5338 13 6 10.5225 -0.7896 -0.7867 14 6 9.7454 0.3455 -0.9054 15 6 8.3667 0.2613 -0.7708 16 8 7.6017 1.3751 -0.8865 17 6 8.2484 2.5498 -1.0250 18 1 9.3235 2.5659 -1.1255 19 6 7.5328 3.7377 -1.0384 20 7 6.2233 3.7182 -0.9165 21 14 8.4288 5.3656 -1.2310 22 1 9.8879 5.1164 -1.3504 23 1 7.9434 6.0562 -2.4528 24 1 8.1672 6.2181 -0.0436 25 7 5.5404 0.0064 -0.4848 26 7 4.2629 -0.0368 -0.3678 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 2.4516 1.5415 -1.0242 31 1 1.5748 2.0477 0.4397 32 1 3.1112 1.1607 0.5845 33 1 3.8162 -3.2989 0.2044 34 1 6.3001 -3.2176 -0.0332 35 1 8.1101 -3.0777 -0.2013 36 1 10.5494 -2.9001 -0.4421 37 1 11.5955 -0.7190 -0.8872 38 1 10.2109 1.2999 -1.1022 39 1 5.7229 4.5491 -0.9255 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243586094.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:06 Heat of formation + Delta-G solvation = 33.170345 kcal Electronic energy + Delta-G solvation = -25395.441666 eV Core-core repulsion = 21691.042933 eV Total energy + Delta-G solvation = -3704.398732 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.20347 -40.84370 -40.20845 -38.08349 -36.76512 -34.65034 -34.25967 -33.91612 -31.22990 -30.49070 -28.88949 -27.64609 -27.33224 -25.67266 -25.41273 -23.11159 -22.50993 -21.33015 -19.76919 -19.13478 -18.72280 -18.16785 -17.31269 -17.14759 -16.95925 -16.32398 -16.03754 -15.84344 -15.58587 -15.47339 -15.22820 -14.92375 -14.59701 -14.26485 -14.20909 -13.96730 -13.54484 -13.45914 -13.40609 -13.08559 -13.00297 -12.58553 -12.54792 -12.26106 -12.10217 -12.08205 -11.38103 -11.23585 -11.20721 -10.92298 -10.73594 -10.39223 -9.79936 -9.51079 -8.84417 -8.33925 -6.00517 -0.76240 -0.07107 0.60995 0.80665 1.38258 1.46184 1.54352 1.61632 1.85669 2.20329 2.62928 2.83366 2.97341 3.29399 3.32170 3.49066 3.55032 3.71443 3.90382 4.07708 4.25872 4.29007 4.31786 4.39430 4.51825 4.56270 4.64022 4.70181 4.78503 4.86218 4.95236 5.05023 5.09425 5.17555 5.20323 5.29422 5.44669 5.64514 5.70948 5.77034 6.06554 6.07602 6.22747 6.83476 7.04785 7.78744 7.87807 8.83006 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.010984 B = 0.005211 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.493141 B = 5372.423271 C = 7893.423073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.601 5.601 3 C 0.095 3.905 4 C 0.576 3.424 5 O -0.561 6.561 6 C -0.036 4.036 7 C -0.063 4.063 8 C -0.117 4.117 9 C 0.130 3.870 10 C -0.171 4.171 11 C -0.036 4.036 12 C -0.202 4.202 13 C -0.047 4.047 14 C -0.260 4.260 15 C 0.140 3.860 16 O -0.166 6.166 17 C -0.425 4.425 18 H 0.098 0.902 19 C -0.010 4.010 20 N -0.878 5.878 21 Si 1.009 2.991 22 H -0.254 1.254 23 H -0.272 1.272 24 H -0.271 1.271 25 N -0.245 5.245 26 N -0.212 5.212 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.050 0.950 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.184 0.816 34 H 0.200 0.800 35 H 0.164 0.836 36 H 0.160 0.840 37 H 0.148 0.852 38 H 0.120 0.880 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.263 -10.038 2.355 10.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.332 5.332 3 C -0.048 4.048 4 C 0.362 3.638 5 O -0.440 6.440 6 C -0.182 4.182 7 C -0.091 4.091 8 C -0.145 4.145 9 C -0.011 4.011 10 C -0.175 4.175 11 C -0.054 4.054 12 C -0.220 4.220 13 C -0.065 4.065 14 C -0.279 4.279 15 C 0.085 3.915 16 O -0.066 6.066 17 C -0.502 4.502 18 H 0.116 0.884 19 C -0.211 4.211 20 N -0.512 5.512 21 Si 0.829 3.171 22 H -0.178 1.178 23 H -0.197 1.197 24 H -0.196 1.196 25 N -0.089 5.089 26 N -0.058 5.058 27 H 0.099 0.901 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.068 0.932 31 H 0.110 0.890 32 H 0.088 0.912 33 H 0.201 0.799 34 H 0.217 0.783 35 H 0.181 0.819 36 H 0.178 0.822 37 H 0.165 0.835 38 H 0.138 0.862 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.201 -8.704 2.152 9.232 hybrid contribution 0.352 -0.017 -0.028 0.354 sum -1.849 -8.721 2.124 9.164 Atomic orbital electron populations 1.21972 0.76675 1.04339 1.03553 1.47771 1.08582 1.06303 1.70502 1.22013 0.96633 0.83542 1.02566 1.17698 0.85358 0.84064 0.76638 1.90703 1.69073 1.31637 1.52591 1.23028 0.96394 0.93790 1.04982 1.22465 0.94039 0.99145 0.93452 1.22694 0.94903 0.98960 0.97942 1.21959 0.95526 0.91474 0.92101 1.17871 0.89289 0.92966 1.17389 1.21268 0.93766 0.96150 0.94254 1.21120 0.94318 0.98324 1.08239 1.21384 1.00337 0.91626 0.93194 1.21291 0.92872 1.00905 1.12827 1.20073 0.91173 0.88267 0.92026 1.84201 1.33640 1.12445 1.76362 1.21919 0.93268 0.82185 1.52783 0.88427 1.26417 0.96547 1.02174 0.96002 1.70291 1.07048 1.28644 1.45175 0.84672 0.78457 0.75708 0.78241 1.17772 1.19722 1.19649 1.74053 0.98136 1.25971 1.10764 1.73860 1.02796 1.23155 1.06029 0.90106 0.89705 0.90159 0.93164 0.88972 0.91174 0.79905 0.78338 0.81867 0.82229 0.83468 0.86237 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.67 10.66 127.77 1.36 3.03 16 2 N -0.60 -18.50 3.27 -875.23 -2.87 -21.37 16 3 C 0.10 3.10 9.17 127.77 1.17 4.27 16 4 C 0.58 20.19 7.65 86.82 0.66 20.86 16 5 O -0.56 -20.33 15.74 -3.84 -0.06 -20.39 16 6 C -0.04 -1.33 6.64 41.99 0.28 -1.05 16 7 C -0.06 -1.90 9.71 22.73 0.22 -1.68 16 8 C -0.12 -3.43 9.53 22.70 0.22 -3.21 16 9 C 0.13 5.29 6.81 41.94 0.29 5.58 16 10 C -0.17 -6.90 5.89 -19.94 -0.12 -7.01 16 11 C -0.04 -1.01 9.42 22.49 0.21 -0.80 16 12 C -0.20 -5.22 10.03 22.26 0.22 -5.00 16 13 C -0.05 -1.43 10.03 22.29 0.22 -1.21 16 14 C -0.26 -10.66 9.16 22.36 0.20 -10.46 16 15 C 0.14 6.74 6.65 22.85 0.15 6.89 16 16 O -0.17 -9.56 7.62 -20.98 -0.16 -9.72 16 17 C -0.43 -24.06 9.49 67.93 0.64 -23.41 16 18 H 0.10 5.09 5.20 -2.91 -0.02 5.08 16 19 C -0.01 -0.53 5.49 84.84 0.47 -0.06 16 20 N -0.88 -52.01 13.67 21.62 0.30 -51.71 16 21 Si 1.01 42.11 29.55 68.60 2.03 44.14 16 22 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16 23 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 24 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 25 N -0.24 -12.04 9.35 -48.34 -0.45 -12.49 16 26 N -0.21 -9.42 7.38 -48.44 -0.36 -9.77 16 27 H 0.08 1.88 6.91 -2.39 -0.02 1.87 16 28 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.05 1.81 8.02 -2.39 -0.02 1.79 16 31 H 0.09 2.35 8.04 -2.39 -0.02 2.33 16 32 H 0.07 2.75 5.74 -2.39 -0.01 2.73 16 33 H 0.18 4.31 7.72 -2.91 -0.02 4.29 16 34 H 0.20 3.62 6.28 -2.91 -0.02 3.60 16 35 H 0.16 3.06 6.23 -2.91 -0.02 3.04 16 36 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 37 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 38 H 0.12 5.05 5.63 -2.91 -0.02 5.03 16 39 H 0.27 14.69 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -77.36 334.76 5.74 -71.62 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: 1.11 Total: 22.95 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: 6.21 Total: -13.26 kcal Atomic # 7 Polarization: -91.96 SS G_CDS: -3.38 Total: -95.34 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -0.22 Total: -30.11 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -77.36 5.74 -71.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243586094.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.793 kcal (2) G-P(sol) polarization free energy of solvation -77.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds