Wall clock time and date at job start Tue Mar 31 2020 10:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35983 * 117.00105 * 2 1 4 4 C 1.38654 * 120.88126 * 0.02562 * 3 2 1 5 5 N 1.32507 * 119.11460 * 180.02562 * 4 3 2 6 6 C 1.31742 * 121.03759 * 359.97438 * 5 4 3 7 7 N 1.31797 * 121.94186 * 0.02562 * 6 5 4 8 8 C 1.32820 * 120.76299 * 359.69720 * 7 6 5 9 9 N 1.39215 * 120.54666 * 180.28754 * 8 7 6 10 10 C 1.34779 * 120.00112 * 0.28845 * 9 8 7 11 11 O 1.21265 * 119.99997 * 359.97438 * 10 9 8 12 12 C 1.50699 * 119.99830 * 179.97438 * 10 9 8 13 13 H 1.09006 * 109.47358 * 299.99991 * 12 10 9 14 14 C 1.50700 * 109.47039 * 59.99744 * 12 10 9 15 15 H 1.07996 * 120.00155 * 33.93990 * 14 12 10 16 16 C 1.37881 * 119.99794 * 213.93979 * 14 12 10 17 17 N 1.31512 * 120.00183 * 6.38970 * 16 14 12 18 18 Si 1.86800 * 119.99656 * 186.39306 * 16 14 12 19 19 H 1.48501 * 109.47464 * 60.00192 * 18 16 14 20 20 H 1.48503 * 109.46941 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47380 * 299.99469 * 18 16 14 22 22 C 1.50696 * 109.46967 * 180.02562 * 12 10 9 23 23 C 1.38243 * 119.99873 * 293.84256 * 22 12 10 24 24 C 1.38228 * 119.99915 * 179.79124 * 23 22 12 25 25 C 1.38237 * 119.99876 * 0.44470 * 24 23 22 26 26 C 1.38230 * 120.00483 * 359.81001 * 25 24 23 27 27 C 1.38237 * 119.99821 * 359.97438 * 26 25 24 28 28 H 1.08996 * 109.46969 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46723 * 299.99659 * 1 2 3 30 30 H 1.08997 * 109.46752 * 60.00092 * 1 2 3 31 31 H 1.07995 * 120.43745 * 0.02562 * 4 3 2 32 32 H 1.07995 * 119.03314 * 179.97438 * 6 5 4 33 33 H 0.97002 * 119.99896 * 180.28071 * 9 8 7 34 34 H 0.96996 * 120.00019 * 179.97438 * 17 16 14 35 35 H 1.08002 * 119.99423 * 0.02562 * 23 22 12 36 36 H 1.08000 * 120.00027 * 180.27666 * 24 23 22 37 37 H 1.08004 * 119.99517 * 179.83808 * 25 24 23 38 38 H 1.07998 * 120.00306 * 180.02562 * 26 25 24 39 39 H 1.07996 * 120.00285 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.3092 2.3859 0.0005 5 7 1.9469 3.5475 0.0000 6 6 3.2633 3.5997 -0.0005 7 7 4.0044 2.5097 -0.0010 8 6 3.4425 1.3062 0.0050 9 7 4.2296 0.1580 0.0104 10 6 5.5734 0.2620 0.0155 11 8 6.0968 1.3559 0.0148 12 6 6.4253 -0.9810 0.0220 13 1 6.2034 -1.5690 0.9126 14 6 6.1282 -1.8001 -1.2076 15 1 5.8764 -1.3088 -2.1358 16 6 6.1778 -3.1767 -1.1475 17 7 6.3599 -3.7783 0.0077 18 14 5.9863 -4.1871 -2.7069 19 1 7.0649 -3.8307 -3.6633 20 1 6.0772 -5.6317 -2.3750 21 1 4.6650 -3.9023 -3.3222 22 6 7.8812 -0.5921 0.0274 23 6 8.4288 0.0514 -1.0667 24 6 9.7632 0.4121 -1.0600 25 6 10.5523 0.1210 0.0370 26 6 10.0061 -0.5271 1.1290 27 6 8.6706 -0.8838 1.1241 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2298 2.3543 0.0014 32 1 3.7496 4.5639 -0.0014 33 1 3.8109 -0.7170 0.0107 34 1 6.3945 -4.7467 0.0500 35 1 7.8130 0.2757 -1.9252 36 1 10.1900 0.9188 -1.9130 37 1 11.5956 0.4005 0.0412 38 1 10.6225 -0.7541 1.9862 39 1 8.2436 -1.3898 1.9774 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361480607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:55 Heat of formation + Delta-G solvation = -3.603719 kcal Electronic energy + Delta-G solvation = -25493.232568 eV Core-core repulsion = 21787.239192 eV Total energy + Delta-G solvation = -3705.993375 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.46913 -40.84357 -39.50004 -39.32469 -36.26625 -35.58258 -33.76226 -32.89730 -31.55527 -31.51161 -29.17499 -28.54419 -26.22502 -24.96849 -24.72496 -23.23630 -22.58409 -21.25460 -19.70071 -18.99885 -18.79021 -18.46139 -17.46913 -17.40114 -17.15191 -16.47752 -16.32209 -15.97609 -15.71500 -15.49556 -15.10795 -14.94882 -14.71147 -14.60348 -14.08530 -14.01810 -13.48269 -13.33681 -13.00872 -12.90134 -12.81268 -12.65338 -12.33970 -12.25905 -12.07359 -11.99697 -11.70473 -11.32968 -10.89544 -10.86540 -10.67681 -9.92858 -9.57270 -9.30210 -9.19097 -8.25816 -6.37210 -0.09710 0.01546 0.73444 0.76681 1.41526 1.44248 1.50428 1.83516 1.93672 2.08253 2.39647 2.83496 3.02595 3.14213 3.22865 3.26748 3.65348 3.73007 4.20399 4.28809 4.34171 4.38643 4.43101 4.43831 4.49270 4.53703 4.78702 4.84901 4.93774 5.06653 5.11638 5.30792 5.36789 5.41828 5.60205 5.73447 5.76978 5.80048 5.89033 6.13831 6.18713 6.36279 6.45812 6.68328 7.11193 7.28987 7.38355 8.82371 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.011572 B = 0.005174 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.980674 B = 5410.087069 C = 7187.251342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.324 6.324 3 C -0.010 4.010 4 C 0.092 3.908 5 N -0.519 5.519 6 C 0.277 3.723 7 N -0.519 5.519 8 C 0.365 3.635 9 N -0.639 5.639 10 C 0.518 3.482 11 O -0.518 6.518 12 C 0.057 3.943 13 H 0.075 0.925 14 C -0.524 4.524 15 H 0.051 0.949 16 C 0.040 3.960 17 N -0.902 5.902 18 Si 0.952 3.048 19 H -0.278 1.278 20 H -0.279 1.279 21 H -0.265 1.265 22 C -0.043 4.043 23 C -0.108 4.108 24 C -0.134 4.134 25 C -0.140 4.140 26 C -0.128 4.128 27 C -0.141 4.141 28 H 0.121 0.879 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.211 0.789 32 H 0.221 0.779 33 H 0.431 0.569 34 H 0.270 0.730 35 H 0.093 0.907 36 H 0.136 0.864 37 H 0.148 0.852 38 H 0.141 0.859 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.672 6.283 0.951 10.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.235 6.235 3 C -0.064 4.064 4 C -0.073 4.073 5 N -0.237 5.237 6 C -0.011 4.011 7 N -0.241 5.241 8 C 0.124 3.876 9 N -0.286 5.286 10 C 0.307 3.693 11 O -0.390 6.390 12 C 0.036 3.964 13 H 0.093 0.907 14 C -0.562 4.562 15 H 0.069 0.931 16 C -0.162 4.162 17 N -0.538 5.538 18 Si 0.777 3.223 19 H -0.204 1.204 20 H -0.204 1.204 21 H -0.190 1.190 22 C -0.044 4.044 23 C -0.127 4.127 24 C -0.152 4.152 25 C -0.158 4.158 26 C -0.146 4.146 27 C -0.159 4.159 28 H 0.139 0.861 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.228 0.772 32 H 0.238 0.762 33 H 0.270 0.730 34 H 0.079 0.921 35 H 0.112 0.888 36 H 0.153 0.847 37 H 0.166 0.834 38 H 0.159 0.841 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -7.684 7.435 1.047 10.744 hybrid contribution -0.864 -1.934 -0.744 2.245 sum -8.548 5.501 0.302 10.169 Atomic orbital electron populations 1.23516 0.75180 1.06339 1.03030 1.86107 1.24459 1.24117 1.88865 1.20198 0.91190 0.88910 1.06099 1.23714 1.02336 0.85184 0.96038 1.68320 1.11186 1.28563 1.15639 1.25255 0.86288 0.96998 0.92519 1.68517 1.40910 0.97458 1.17191 1.18741 0.86291 0.87916 0.94702 1.43677 1.06658 1.07714 1.70570 1.21943 0.81881 0.92167 0.73268 1.90656 1.72576 1.29675 1.46123 1.18013 0.88011 0.89620 1.00756 0.90747 1.20675 1.49880 0.90977 0.94640 0.93057 1.25544 0.93396 0.98527 0.98776 1.69949 1.48138 1.10337 1.25406 0.85698 0.79007 0.77662 0.79917 1.20383 1.20419 1.18992 1.20067 0.96513 0.94367 0.93445 1.20842 0.95594 0.98676 0.97565 1.21324 0.93449 1.00867 0.99569 1.21295 1.00585 1.00352 0.93551 1.21310 0.94494 0.99277 0.99516 1.21148 0.95293 1.01534 0.97934 0.86108 0.90571 0.90760 0.77232 0.76242 0.72967 0.92054 0.88831 0.84656 0.83407 0.84077 0.87320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.84 113.37 1.12 1.30 16 2 O -0.32 -8.34 9.86 -93.36 -0.92 -9.26 16 3 C -0.01 -0.30 6.75 22.78 0.15 -0.14 16 4 C 0.09 2.18 10.30 84.69 0.87 3.05 16 5 N -0.52 -14.15 10.43 -199.93 -2.08 -16.24 16 6 C 0.28 8.50 12.28 180.90 2.22 10.72 16 7 N -0.52 -20.23 8.04 -196.95 -1.58 -21.81 16 8 C 0.37 13.86 7.48 133.06 1.00 14.85 16 9 N -0.64 -26.69 5.29 -307.59 -1.63 -28.32 16 10 C 0.52 24.73 7.00 87.66 0.61 25.34 16 11 O -0.52 -26.58 13.72 -2.98 -0.04 -26.62 16 12 C 0.06 2.84 2.44 -13.03 -0.03 2.81 16 13 H 0.07 3.93 7.00 -2.38 -0.02 3.92 16 14 C -0.52 -26.98 7.46 25.60 0.19 -26.79 16 15 H 0.05 2.70 7.82 -2.91 -0.02 2.67 16 16 C 0.04 2.06 5.45 84.66 0.46 2.52 16 17 N -0.90 -47.79 12.78 21.45 0.27 -47.51 16 18 Si 0.95 40.95 29.54 68.60 2.03 42.98 16 19 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 20 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 21 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 22 C -0.04 -2.07 4.30 -19.86 -0.09 -2.15 16 23 C -0.11 -4.97 8.31 22.27 0.19 -4.79 16 24 C -0.13 -5.10 10.05 22.27 0.22 -4.88 16 25 C -0.14 -4.78 10.05 22.27 0.22 -4.55 16 26 C -0.13 -4.67 10.05 22.27 0.22 -4.45 16 27 C -0.14 -6.19 9.67 22.27 0.22 -5.97 16 28 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.08 0.75 7.71 -2.39 -0.02 0.74 16 30 H 0.07 0.77 7.71 -2.39 -0.02 0.75 16 31 H 0.21 2.96 6.46 -2.91 -0.02 2.94 16 32 H 0.22 5.25 8.06 -2.91 -0.02 5.23 16 33 H 0.43 17.16 8.03 -92.71 -0.74 16.41 16 34 H 0.27 13.63 8.31 -92.71 -0.77 12.86 16 35 H 0.09 4.49 7.89 -2.91 -0.02 4.46 16 36 H 0.14 4.26 8.06 -2.91 -0.02 4.23 16 37 H 0.15 3.80 8.06 -2.91 -0.02 3.77 16 38 H 0.14 4.11 8.06 -2.91 -0.02 4.09 16 39 H 0.11 4.70 7.95 -2.91 -0.02 4.68 16 Total: -1.00 -68.55 341.68 3.97 -64.58 By element: Atomic # 1 Polarization: 35.01 SS G_CDS: 0.35 Total: 35.36 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: 7.58 Total: 6.85 kcal Atomic # 7 Polarization: -108.86 SS G_CDS: -5.02 Total: -113.88 kcal Atomic # 8 Polarization: -34.93 SS G_CDS: -0.96 Total: -35.89 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.98 kcal Total: -68.55 3.97 -64.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361480607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.976 kcal (2) G-P(sol) polarization free energy of solvation -68.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds