Wall clock time and date at job start Tue Mar 31 2020 10:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47478 * 2 1 4 4 C 1.50697 * 109.46994 * 239.99850 * 2 1 3 5 5 O 1.21287 * 119.99855 * 240.00130 * 4 2 1 6 6 N 1.34774 * 120.00446 * 60.00273 * 4 2 1 7 7 C 1.39915 * 120.00627 * 174.78975 * 6 4 2 8 8 C 1.38967 * 120.03501 * 326.32577 * 7 6 4 9 9 C 1.38153 * 120.06927 * 180.02562 * 8 7 6 10 10 C 1.38175 * 120.13921 * 359.69894 * 9 8 7 11 11 C 1.38911 * 120.06459 * 0.55750 * 10 9 8 12 12 O 1.35758 * 120.02645 * 179.74625 * 11 10 9 13 13 C 1.34835 * 116.99405 * 173.81802 * 12 11 10 14 14 H 1.07999 * 120.00545 * 354.59660 * 13 12 11 15 15 C 1.38652 * 119.99653 * 174.59275 * 13 12 11 16 16 N 1.31555 * 120.00131 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00089 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46822 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47137 * 119.99470 * 17 15 13 20 20 H 1.48497 * 109.46875 * 239.99992 * 17 15 13 21 21 C 1.38716 * 120.03956 * 146.34550 * 7 6 4 22 22 C 1.50698 * 109.46892 * 119.99750 * 2 1 3 23 23 C 1.38394 * 120.00179 * 34.72711 * 22 2 1 24 24 N 1.32120 * 119.99866 * 179.78131 * 23 22 2 25 25 C 1.32154 * 120.00054 * 0.48951 * 24 23 22 26 26 C 1.38349 * 120.00229 * 359.73623 * 25 24 23 27 27 N 1.32117 * 120.00218 * 214.99600 * 22 2 1 28 28 H 1.09000 * 109.47478 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46981 * 300.00541 * 1 2 3 30 30 H 1.09009 * 109.46930 * 59.99928 * 1 2 3 31 31 H 0.97008 * 119.99425 * 354.78574 * 6 4 2 32 32 H 1.08004 * 119.96320 * 0.02562 * 8 7 6 33 33 H 1.07999 * 119.93378 * 179.97438 * 9 8 7 34 34 H 1.07998 * 119.96430 * 180.29790 * 10 9 8 35 35 H 0.97002 * 120.00169 * 179.97438 * 16 15 13 36 36 H 1.07993 * 120.06831 * 0.02562 * 21 7 6 37 37 H 1.08004 * 120.00074 * 0.02562 * 23 22 2 38 38 H 1.07997 * 120.00104 * 179.71890 * 25 24 23 39 39 H 1.07993 * 120.00037 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.7296 -1.6966 -1.1191 6 7 1.7068 -0.2500 -2.4546 7 6 2.2603 -0.8424 -3.5949 8 6 3.5542 -1.3481 -3.5576 9 6 4.1016 -1.9327 -4.6833 10 6 3.3629 -2.0220 -5.8476 11 6 2.0710 -1.5136 -5.8928 12 8 1.3478 -1.5972 -7.0387 13 6 0.0600 -1.2021 -6.9798 14 1 -0.3764 -0.9225 -6.0323 15 6 -0.7041 -1.1547 -8.1358 16 7 -0.1724 -1.4947 -9.2901 17 14 -2.4881 -0.6067 -8.0545 18 1 -2.8420 -0.2802 -6.6497 19 1 -2.6757 0.5961 -8.9050 20 1 -3.3647 -1.7008 -8.5438 21 6 1.5185 -0.9251 -4.7641 22 6 2.0323 -0.7104 1.2305 23 6 1.3342 -1.7920 1.7385 24 7 1.7770 -2.4174 2.8148 25 6 2.8811 -2.0041 3.4119 26 6 3.5765 -0.9200 2.9068 27 7 3.1361 -0.2973 1.8274 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8901 31 1 1.0886 0.4920 -2.5450 32 1 4.1323 -1.2841 -2.6475 33 1 5.1075 -2.3246 -4.6519 34 1 3.7920 -2.4839 -6.7245 35 1 -0.7071 -1.4619 -10.0988 36 1 0.5130 -0.5322 -4.7959 37 1 0.4297 -2.1273 1.2529 38 1 3.2406 -2.5126 4.2943 39 1 4.4785 -0.5820 3.3950 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361658300.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:06:03 Heat of formation + Delta-G solvation = 16.815697 kcal Electronic energy + Delta-G solvation = -24619.283801 eV Core-core repulsion = 20914.175877 eV Total energy + Delta-G solvation = -3705.107923 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.53756 -40.19615 -38.71729 -36.56895 -35.09500 -34.41649 -34.01969 -32.26319 -30.55353 -29.28349 -28.48697 -25.86664 -25.33874 -24.73205 -23.73118 -21.86303 -21.60944 -19.96734 -18.13196 -17.98315 -17.79367 -17.30058 -16.87604 -16.17898 -15.43501 -15.28849 -14.99177 -14.94128 -14.44923 -14.37622 -14.14417 -13.82117 -13.60244 -13.15164 -13.00673 -12.75468 -12.37981 -12.28415 -11.95182 -11.79911 -11.71206 -11.59449 -11.43067 -11.14115 -11.06722 -10.75711 -10.45651 -10.00929 -9.67348 -9.55001 -9.39559 -9.31965 -8.83622 -7.77959 -7.19418 -6.47694 -4.07527 0.50055 0.90099 1.89915 2.33592 2.74336 3.02696 3.09721 3.10434 3.15713 3.53203 3.65790 3.93119 4.01465 4.17530 4.34139 4.53232 4.61812 4.67975 4.72338 5.00105 5.06964 5.08346 5.24172 5.24841 5.28105 5.43302 5.67312 5.71773 5.95476 6.02769 6.07069 6.19785 6.24372 6.59449 6.91384 6.94396 7.01787 7.08841 7.27753 7.38655 7.52116 7.61227 7.76582 7.96329 8.20132 8.97710 9.68005 10.70417 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.020017 B = 0.003002 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.467207 B = 9325.503656 C =10311.630326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.059 4.059 3 H 0.122 0.878 4 C 0.521 3.479 5 O -0.513 6.513 6 N -0.665 5.665 7 C 0.179 3.821 8 C -0.205 4.205 9 C -0.063 4.063 10 C -0.199 4.199 11 C 0.168 3.832 12 O -0.176 6.176 13 C -0.392 4.392 14 H 0.091 0.909 15 C 0.039 3.961 16 N -0.862 5.862 17 Si 0.940 3.060 18 H -0.267 1.267 19 H -0.276 1.276 20 H -0.276 1.276 21 C -0.254 4.254 22 C 0.107 3.893 23 C 0.068 3.932 24 N -0.436 5.436 25 C 0.044 3.956 26 C 0.053 3.947 27 N -0.431 5.431 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.407 0.593 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.270 0.730 36 H 0.131 0.869 37 H 0.169 0.831 38 H 0.170 0.830 39 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.874 4.854 21.611 22.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.082 4.082 3 H 0.140 0.860 4 C 0.306 3.694 5 O -0.387 6.387 6 N -0.309 5.309 7 C 0.087 3.913 8 C -0.225 4.225 9 C -0.082 4.082 10 C -0.219 4.219 11 C 0.114 3.886 12 O -0.079 6.079 13 C -0.468 4.468 14 H 0.108 0.892 15 C -0.165 4.165 16 N -0.496 5.496 17 Si 0.765 3.235 18 H -0.192 1.192 19 H -0.201 1.201 20 H -0.201 1.201 21 C -0.276 4.276 22 C -0.034 4.034 23 C -0.091 4.091 24 N -0.150 5.150 25 C -0.116 4.116 26 C -0.107 4.107 27 N -0.145 5.145 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.243 0.757 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.080 0.920 36 H 0.148 0.852 37 H 0.186 0.814 38 H 0.187 0.813 39 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 2.358 4.055 21.277 21.787 hybrid contribution -1.120 0.679 0.029 1.310 sum 1.238 4.734 21.306 21.860 Atomic orbital electron populations 1.21934 0.91040 1.03824 1.04006 1.20170 0.97898 1.01142 0.88982 0.86004 1.20233 0.80743 0.84427 0.83962 1.90756 1.36677 1.24941 1.86326 1.43412 1.47092 1.35892 1.04527 1.17384 0.92025 0.96744 0.85190 1.20528 0.94447 1.08337 0.99232 1.20529 0.98449 0.97395 0.91831 1.20263 0.93879 1.08568 0.99159 1.19079 0.91078 0.91932 0.86536 1.84027 1.23339 1.73182 1.27378 1.21315 0.83356 1.46562 0.95583 0.89190 1.25284 1.00202 0.96836 0.94182 1.70044 1.36880 1.44226 0.98497 0.85660 0.80582 0.78508 0.78718 1.19171 1.20149 1.20138 1.20807 1.01639 1.11747 0.93401 1.21448 0.91826 0.94525 0.95587 1.23572 1.00507 0.92209 0.92854 1.68477 1.12237 1.26900 1.07400 1.23785 0.92111 0.95463 1.00207 1.23742 1.00293 0.93794 0.92859 1.68169 1.10658 1.28708 1.07010 0.91064 0.90651 0.90383 0.75711 0.86489 0.86632 0.86341 0.92040 0.85166 0.81423 0.81323 0.81257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 8.51 37.16 0.32 -0.74 16 2 C -0.06 -0.59 3.07 -92.93 -0.29 -0.88 16 3 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 4 C 0.52 7.41 6.88 -10.99 -0.08 7.34 16 5 O -0.51 -9.41 13.74 5.55 0.08 -9.34 16 6 N -0.66 -9.53 5.26 -9.88 -0.05 -9.58 16 7 C 0.18 3.37 6.27 -83.72 -0.52 2.84 16 8 C -0.20 -3.95 8.65 -39.34 -0.34 -4.29 16 9 C -0.06 -1.20 10.03 -39.64 -0.40 -1.60 16 10 C -0.20 -4.26 9.99 -39.36 -0.39 -4.65 16 11 C 0.17 4.03 6.64 -39.14 -0.26 3.77 16 12 O -0.18 -4.94 9.76 0.01 0.00 -4.94 16 13 C -0.39 -10.69 9.44 30.89 0.29 -10.39 16 14 H 0.09 2.25 5.30 -52.49 -0.28 1.97 16 15 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 16 N -0.86 -24.93 13.67 55.48 0.76 -24.17 16 17 Si 0.94 19.97 29.55 -169.99 -5.02 14.94 16 18 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 19 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 20 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 21 C -0.25 -5.38 9.04 -39.21 -0.35 -5.74 16 22 C 0.11 1.25 5.03 -82.41 -0.41 0.83 16 23 C 0.07 0.78 10.33 -17.37 -0.18 0.60 16 24 N -0.44 -5.04 10.50 -13.06 -0.14 -5.18 16 25 C 0.04 0.40 11.22 -17.37 -0.19 0.20 16 26 C 0.05 0.49 11.23 -17.37 -0.19 0.29 16 27 N -0.43 -5.13 10.42 -9.29 -0.10 -5.22 16 28 H 0.07 0.52 6.51 -51.93 -0.34 0.18 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.46 7.46 -51.92 -0.39 0.07 16 31 H 0.41 4.41 8.10 -40.82 -0.33 4.08 16 32 H 0.12 2.25 6.43 -52.48 -0.34 1.91 16 33 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 34 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 35 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 36 H 0.13 2.67 5.71 -52.49 -0.30 2.37 16 37 H 0.17 1.60 6.32 -52.48 -0.33 1.26 16 38 H 0.17 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.17 0.95 8.06 -52.49 -0.42 0.52 16 LS Contribution 338.72 15.07 5.10 5.10 Total: -1.00 -35.40 338.72 -6.45 -41.85 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -3.97 Total: 8.00 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: -3.10 Total: -11.47 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: 0.47 Total: -44.15 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: 0.08 Total: -14.28 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.40 -6.45 -41.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361658300.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.661 kcal (2) G-P(sol) polarization free energy of solvation -35.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds