Wall clock time and date at job start Tue Mar 31 2020 10:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47478 * 2 1 4 4 C 1.50697 * 109.46994 * 239.99850 * 2 1 3 5 5 O 1.21287 * 119.99855 * 240.00130 * 4 2 1 6 6 N 1.34774 * 120.00446 * 60.00273 * 4 2 1 7 7 C 1.39915 * 120.00627 * 174.78975 * 6 4 2 8 8 C 1.38967 * 120.03501 * 326.32577 * 7 6 4 9 9 C 1.38153 * 120.06927 * 180.02562 * 8 7 6 10 10 C 1.38175 * 120.13921 * 359.69894 * 9 8 7 11 11 C 1.38911 * 120.06459 * 0.55750 * 10 9 8 12 12 O 1.35758 * 120.02645 * 179.74625 * 11 10 9 13 13 C 1.34835 * 116.99405 * 173.81802 * 12 11 10 14 14 H 1.07999 * 120.00545 * 354.59660 * 13 12 11 15 15 C 1.38652 * 119.99653 * 174.59275 * 13 12 11 16 16 N 1.31555 * 120.00131 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00089 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46822 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47137 * 119.99470 * 17 15 13 20 20 H 1.48497 * 109.46875 * 239.99992 * 17 15 13 21 21 C 1.38716 * 120.03956 * 146.34550 * 7 6 4 22 22 C 1.50698 * 109.46892 * 119.99750 * 2 1 3 23 23 C 1.38394 * 120.00179 * 34.72711 * 22 2 1 24 24 N 1.32120 * 119.99866 * 179.78131 * 23 22 2 25 25 C 1.32154 * 120.00054 * 0.48951 * 24 23 22 26 26 C 1.38349 * 120.00229 * 359.73623 * 25 24 23 27 27 N 1.32117 * 120.00218 * 214.99600 * 22 2 1 28 28 H 1.09000 * 109.47478 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46981 * 300.00541 * 1 2 3 30 30 H 1.09009 * 109.46930 * 59.99928 * 1 2 3 31 31 H 0.97008 * 119.99425 * 354.78574 * 6 4 2 32 32 H 1.08004 * 119.96320 * 0.02562 * 8 7 6 33 33 H 1.07999 * 119.93378 * 179.97438 * 9 8 7 34 34 H 1.07998 * 119.96430 * 180.29790 * 10 9 8 35 35 H 0.97002 * 120.00169 * 179.97438 * 16 15 13 36 36 H 1.07993 * 120.06831 * 0.02562 * 21 7 6 37 37 H 1.08004 * 120.00074 * 0.02562 * 23 22 2 38 38 H 1.07997 * 120.00104 * 179.71890 * 25 24 23 39 39 H 1.07993 * 120.00037 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.7296 -1.6966 -1.1191 6 7 1.7068 -0.2500 -2.4546 7 6 2.2603 -0.8424 -3.5949 8 6 3.5542 -1.3481 -3.5576 9 6 4.1016 -1.9327 -4.6833 10 6 3.3629 -2.0220 -5.8476 11 6 2.0710 -1.5136 -5.8928 12 8 1.3478 -1.5972 -7.0387 13 6 0.0600 -1.2021 -6.9798 14 1 -0.3764 -0.9225 -6.0323 15 6 -0.7041 -1.1547 -8.1358 16 7 -0.1724 -1.4947 -9.2901 17 14 -2.4881 -0.6067 -8.0545 18 1 -2.8420 -0.2802 -6.6497 19 1 -2.6757 0.5961 -8.9050 20 1 -3.3647 -1.7008 -8.5438 21 6 1.5185 -0.9251 -4.7641 22 6 2.0323 -0.7104 1.2305 23 6 1.3342 -1.7920 1.7385 24 7 1.7770 -2.4174 2.8148 25 6 2.8811 -2.0041 3.4119 26 6 3.5765 -0.9200 2.9068 27 7 3.1361 -0.2973 1.8274 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8901 31 1 1.0886 0.4920 -2.5450 32 1 4.1323 -1.2841 -2.6475 33 1 5.1075 -2.3246 -4.6519 34 1 3.7920 -2.4839 -6.7245 35 1 -0.7071 -1.4619 -10.0988 36 1 0.5130 -0.5322 -4.7959 37 1 0.4297 -2.1273 1.2529 38 1 3.2406 -2.5126 4.2943 39 1 4.4785 -0.5820 3.3950 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361658300.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:06:03 Heat of formation + Delta-G solvation = -8.649604 kcal Electronic energy + Delta-G solvation = -24620.388059 eV Core-core repulsion = 20914.175877 eV Total energy + Delta-G solvation = -3706.212181 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.37318 -41.45727 -40.35655 -38.21284 -35.98722 -35.70947 -34.88544 -34.21252 -31.48290 -30.79709 -30.01223 -27.32909 -26.56958 -25.48546 -24.79346 -23.52855 -22.88326 -21.27540 -19.80621 -19.43056 -18.68207 -18.21757 -18.02535 -17.35911 -16.85312 -16.63464 -16.31967 -16.06285 -15.84142 -15.65719 -15.47627 -15.08335 -15.00727 -14.56389 -14.25113 -13.83241 -13.56835 -13.46586 -13.31343 -12.88492 -12.74029 -12.69753 -12.66744 -12.46864 -12.39533 -12.24207 -12.06346 -11.51380 -11.27633 -10.94728 -10.71738 -10.24560 -10.07917 -9.37985 -8.90311 -8.45591 -6.14503 -0.24150 0.12930 0.36418 0.67077 1.37914 1.44882 1.52993 1.56200 1.92365 2.19097 2.73816 2.83070 2.92398 3.16447 3.32498 3.44231 3.48560 3.55680 3.76502 4.01330 4.05875 4.11598 4.30244 4.33636 4.41194 4.43527 4.57271 4.62138 4.71125 4.76554 4.83809 4.99924 5.11838 5.19611 5.34744 5.39470 5.44384 5.64084 5.65482 6.02126 6.13552 6.27755 6.39368 6.77656 6.98765 7.03356 7.77961 8.77661 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.020017 B = 0.003002 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.467207 B = 9325.503656 C =10311.630326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.046 4.046 3 H 0.141 0.859 4 C 0.522 3.478 5 O -0.555 6.555 6 N -0.655 5.655 7 C 0.188 3.812 8 C -0.201 4.201 9 C -0.053 4.053 10 C -0.214 4.214 11 C 0.135 3.865 12 O -0.226 6.226 13 C -0.412 4.412 14 H 0.105 0.895 15 C -0.023 4.023 16 N -0.921 5.921 17 Si 1.019 2.981 18 H -0.245 1.245 19 H -0.269 1.269 20 H -0.273 1.273 21 C -0.255 4.255 22 C 0.089 3.911 23 C 0.054 3.946 24 N -0.462 5.462 25 C 0.045 3.955 26 C 0.051 3.949 27 N -0.456 5.456 28 H 0.066 0.934 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.426 0.574 32 H 0.124 0.876 33 H 0.151 0.849 34 H 0.119 0.881 35 H 0.272 0.728 36 H 0.134 0.866 37 H 0.177 0.823 38 H 0.205 0.795 39 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.435 6.053 24.727 25.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.069 4.069 3 H 0.158 0.842 4 C 0.311 3.689 5 O -0.432 6.432 6 N -0.301 5.301 7 C 0.094 3.906 8 C -0.222 4.222 9 C -0.072 4.072 10 C -0.233 4.233 11 C 0.084 3.916 12 O -0.132 6.132 13 C -0.488 4.488 14 H 0.122 0.878 15 C -0.220 4.220 16 N -0.559 5.559 17 Si 0.838 3.162 18 H -0.168 1.168 19 H -0.194 1.194 20 H -0.198 1.198 21 C -0.277 4.277 22 C -0.051 4.051 23 C -0.105 4.105 24 N -0.177 5.177 25 C -0.114 4.114 26 C -0.109 4.109 27 N -0.171 5.171 28 H 0.085 0.915 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.265 0.735 32 H 0.142 0.858 33 H 0.168 0.832 34 H 0.137 0.863 35 H 0.081 0.919 36 H 0.152 0.848 37 H 0.194 0.806 38 H 0.221 0.779 39 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 1.915 5.289 24.442 25.081 hybrid contribution -0.713 0.260 -0.643 0.995 sum 1.202 5.549 23.799 24.467 Atomic orbital electron populations 1.22002 0.88662 1.04178 1.05782 1.20173 0.99660 1.00978 0.86043 0.84185 1.21014 0.79510 0.83782 0.84629 1.90734 1.38574 1.26952 1.86900 1.43383 1.47187 1.36079 1.03464 1.17404 0.91699 0.95694 0.85829 1.20802 0.94651 1.07371 0.99369 1.20886 0.99612 0.96115 0.90554 1.20473 0.93535 1.09024 1.00318 1.19591 0.92051 0.93353 0.86636 1.83996 1.24152 1.75500 1.29567 1.21859 0.83727 1.46606 0.96569 0.87763 1.26607 1.05370 0.96615 0.93441 1.70194 1.39206 1.46925 0.99542 0.84526 0.73784 0.78025 0.79867 1.16841 1.19432 1.19795 1.20846 1.01924 1.11486 0.93436 1.21621 0.92205 0.95058 0.96246 1.23766 1.01120 0.92410 0.93202 1.68494 1.13557 1.27662 1.07944 1.24407 0.91070 0.95237 1.00700 1.24362 1.01081 0.93398 0.92083 1.68186 1.10998 1.29722 1.08184 0.91460 0.88637 0.88873 0.73518 0.85794 0.83171 0.86322 0.91857 0.84810 0.80628 0.77878 0.77901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.51 71.98 0.61 -1.07 16 2 C -0.05 -0.82 3.07 -12.29 -0.04 -0.85 16 3 H 0.14 1.98 8.14 -2.39 -0.02 1.96 16 4 C 0.52 13.87 6.88 87.66 0.60 14.47 16 5 O -0.55 -19.65 13.74 -3.05 -0.04 -19.69 16 6 N -0.65 -17.42 5.26 -303.56 -1.60 -19.01 16 7 C 0.19 6.82 6.27 38.14 0.24 7.06 16 8 C -0.20 -7.45 8.65 22.42 0.19 -7.25 16 9 C -0.05 -1.95 10.03 22.23 0.22 -1.73 16 10 C -0.21 -9.29 9.99 22.42 0.22 -9.07 16 11 C 0.14 6.66 6.64 22.56 0.15 6.81 16 12 O -0.23 -13.31 9.76 -22.88 -0.22 -13.54 16 13 C -0.41 -23.13 9.44 67.92 0.64 -22.49 16 14 H 0.11 5.27 5.30 -2.91 -0.02 5.26 16 15 C -0.02 -1.26 5.49 84.83 0.47 -0.79 16 16 N -0.92 -55.56 13.67 21.61 0.30 -55.26 16 17 Si 1.02 41.14 29.55 68.60 2.03 43.17 16 18 H -0.25 -8.88 7.11 99.48 0.71 -8.17 16 19 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 20 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 21 C -0.26 -10.79 9.04 22.51 0.20 -10.59 16 22 C 0.09 1.91 5.03 42.55 0.21 2.12 16 23 C 0.05 1.15 10.33 84.69 0.87 2.03 16 24 N -0.46 -9.98 10.50 -195.22 -2.05 -12.03 16 25 C 0.05 0.71 11.22 84.67 0.95 1.66 16 26 C 0.05 0.81 11.23 84.67 0.95 1.76 16 27 N -0.46 -9.92 10.42 -183.29 -1.91 -11.83 16 28 H 0.07 0.83 6.51 -2.39 -0.02 0.82 16 29 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.09 0.77 7.46 -2.38 -0.02 0.75 16 31 H 0.43 8.10 8.10 -92.70 -0.75 7.35 16 32 H 0.12 4.51 6.43 -2.91 -0.02 4.49 16 33 H 0.15 4.41 8.06 -2.91 -0.02 4.39 16 34 H 0.12 5.03 8.06 -2.91 -0.02 5.01 16 35 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 36 H 0.13 5.45 5.71 -2.91 -0.02 5.44 16 37 H 0.18 3.18 6.32 -2.91 -0.02 3.16 16 38 H 0.20 1.50 8.06 -2.91 -0.02 1.48 16 39 H 0.20 1.57 8.06 -2.91 -0.02 1.55 16 Total: -1.00 -80.82 338.72 3.37 -77.45 By element: Atomic # 1 Polarization: 28.31 SS G_CDS: 0.36 Total: 28.67 kcal Atomic # 6 Polarization: -24.44 SS G_CDS: 6.51 Total: -17.93 kcal Atomic # 7 Polarization: -92.88 SS G_CDS: -5.26 Total: -98.14 kcal Atomic # 8 Polarization: -32.96 SS G_CDS: -0.27 Total: -33.22 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Total: -80.82 3.37 -77.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361658300.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.798 kcal (2) G-P(sol) polarization free energy of solvation -80.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds