Wall clock time and date at job start Tue Mar 31 2020 10:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46502 * 120.00173 * 2 1 4 4 C 1.50698 * 109.46992 * 269.99754 * 3 2 1 5 5 N 1.31790 * 119.12424 * 269.72337 * 4 3 2 6 6 C 1.32340 * 120.81752 * 179.75944 * 5 4 3 7 7 C 1.38591 * 119.10473 * 0.50994 * 6 5 4 8 8 C 1.38598 * 118.39830 * 359.74592 * 7 6 5 9 9 N 1.31798 * 119.12166 * 89.99652 * 4 3 2 10 10 C 1.34772 * 120.00091 * 179.97438 * 2 1 3 11 11 O 1.21596 * 120.00235 * 184.32379 * 10 2 1 12 12 C 1.47539 * 120.00132 * 4.32672 * 10 2 1 13 13 C 1.39667 * 120.19569 * 312.04578 * 12 10 2 14 14 C 1.37824 * 119.92096 * 180.02562 * 13 12 10 15 15 C 1.38579 * 120.32155 * 359.97240 * 14 13 12 16 16 C 1.38022 * 120.39888 * 0.02562 * 15 14 13 17 17 C 1.38830 * 120.07471 * 0.02562 * 16 15 14 18 18 O 1.35522 * 120.15746 * 179.97438 * 17 16 15 19 19 C 1.34811 * 117.00412 * 353.90655 * 18 17 16 20 20 H 1.08003 * 119.99992 * 5.27214 * 19 18 17 21 21 C 1.38699 * 120.00242 * 185.26667 * 19 18 17 22 22 N 1.31519 * 119.99896 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 120.00055 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47306 * 89.99500 * 23 21 19 25 25 H 1.48492 * 109.47346 * 209.99862 * 23 21 19 26 26 H 1.48500 * 109.46694 * 329.99691 * 23 21 19 27 27 H 1.08997 * 109.47208 * 272.35348 * 1 2 3 28 28 H 1.09000 * 109.46827 * 32.35374 * 1 2 3 29 29 H 1.09005 * 109.47197 * 152.35276 * 1 2 3 30 30 H 1.09001 * 109.47220 * 29.99762 * 3 2 1 31 31 H 1.08998 * 109.47418 * 149.99760 * 3 2 1 32 32 H 1.07999 * 120.44189 * 180.23902 * 6 5 4 33 33 H 1.07996 * 120.80132 * 179.77585 * 7 6 5 34 34 H 1.08003 * 120.44245 * 180.02562 * 8 7 6 35 35 H 1.07999 * 120.04017 * 359.97438 * 13 12 10 36 36 H 1.07994 * 119.83789 * 179.97438 * 14 13 12 37 37 H 1.08001 * 119.79754 * 179.74771 * 15 14 13 38 38 H 1.08007 * 119.95937 * 179.97438 * 16 15 14 39 39 H 0.97004 * 119.99558 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 7 3.5553 1.3177 -2.0236 6 6 3.8075 1.6762 -3.2723 7 6 2.8949 2.4763 -3.9414 8 6 1.7453 2.8662 -3.2725 9 7 1.5585 2.4645 -2.0256 10 6 2.1388 -1.1672 0.0005 11 8 3.3522 -1.1686 0.0799 12 6 1.4043 -2.4431 -0.0953 13 6 0.2969 -2.6793 0.7223 14 6 -0.3848 -3.8735 0.6284 15 6 0.0228 -4.8426 -0.2744 16 6 1.1153 -4.6231 -1.0888 17 6 1.8146 -3.4266 -1.0073 18 8 2.8879 -3.2096 -1.8058 19 6 3.3028 -4.2415 -2.5676 20 1 2.7348 -5.1599 -2.5884 21 6 4.4588 -4.1238 -3.3249 22 7 4.8637 -5.1308 -4.0677 23 14 5.4414 -2.5355 -3.2886 24 1 6.4549 -2.6050 -2.2054 25 1 6.1239 -2.3458 -4.5937 26 1 4.5264 -1.3931 -3.0378 27 1 -0.3633 0.0422 1.0268 28 1 -0.3633 0.8681 -0.5500 29 1 -0.3634 -0.9104 -0.4769 30 1 1.6084 2.0284 0.5138 31 1 3.1499 1.1384 0.5139 32 1 4.7144 1.3532 -3.7618 33 1 3.0748 2.7880 -4.9597 34 1 1.0117 3.4893 -3.7626 35 1 -0.0244 -1.9274 1.4278 36 1 -1.2406 -4.0548 1.2616 37 1 -0.5151 -5.7770 -0.3381 38 1 1.4270 -5.3835 -1.7897 39 1 5.6724 -5.0485 -4.5970 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001471461066.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:55 Heat of formation + Delta-G solvation = 35.097552 kcal Electronic energy + Delta-G solvation = -26057.418499 eV Core-core repulsion = 22353.103336 eV Total energy + Delta-G solvation = -3704.315162 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.01192 -39.88234 -38.40170 -36.55014 -35.28512 -33.63780 -32.58361 -32.45006 -30.65577 -29.24600 -27.95643 -26.17387 -25.30233 -24.48725 -23.42346 -22.21784 -21.35771 -19.42514 -17.98349 -17.59932 -17.24826 -17.04594 -16.41326 -15.99405 -15.60255 -14.94493 -14.87590 -14.42547 -14.26295 -13.87361 -13.80931 -13.75000 -13.55011 -12.95956 -12.93400 -12.52553 -12.39652 -12.26780 -12.13267 -11.85158 -11.32595 -11.21191 -10.91275 -10.80880 -10.75636 -10.70604 -10.13604 -9.73280 -9.56669 -9.15299 -9.10909 -8.89149 -8.49491 -8.32436 -7.48949 -6.46581 -4.12849 0.85314 1.14410 1.68739 2.17501 3.12303 3.25353 3.38443 3.42809 3.58513 3.95282 3.99191 4.18633 4.31367 4.40661 4.59791 4.72028 4.97108 5.01601 5.07972 5.10340 5.28569 5.32057 5.39915 5.44385 5.58030 5.68021 5.72511 5.84054 5.91108 5.93602 6.07906 6.37185 6.38933 6.53005 6.71789 6.87232 6.99617 7.03148 7.15596 7.47858 7.63376 7.75149 7.95094 8.17029 8.73414 8.88566 9.49668 10.58980 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.009947 B = 0.007223 C = 0.004664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2814.156890 B = 3875.415951 C = 6002.587026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.617 5.617 3 C 0.188 3.812 4 C 0.300 3.700 5 N -0.484 5.484 6 C 0.150 3.850 7 C -0.231 4.231 8 C 0.142 3.858 9 N -0.514 5.514 10 C 0.573 3.427 11 O -0.505 6.505 12 C -0.217 4.217 13 C -0.045 4.045 14 C -0.217 4.217 15 C -0.055 4.055 16 C -0.224 4.224 17 C 0.198 3.802 18 O -0.187 6.187 19 C -0.393 4.393 20 H 0.108 0.892 21 C 0.070 3.930 22 N -0.872 5.872 23 Si 0.901 3.099 24 H -0.270 1.270 25 H -0.287 1.287 26 H -0.246 1.246 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.109 0.891 32 H 0.165 0.835 33 H 0.146 0.854 34 H 0.166 0.834 35 H 0.120 0.880 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.138 0.862 39 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.653 13.988 3.821 17.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.353 5.353 3 C 0.063 3.937 4 C 0.031 3.969 5 N -0.198 5.198 6 C -0.016 4.016 7 C -0.253 4.253 8 C -0.025 4.025 9 N -0.229 5.229 10 C 0.363 3.637 11 O -0.378 6.378 12 C -0.221 4.221 13 C -0.064 4.064 14 C -0.236 4.236 15 C -0.073 4.073 16 C -0.244 4.244 17 C 0.142 3.858 18 O -0.088 6.088 19 C -0.468 4.468 20 H 0.126 0.874 21 C -0.135 4.135 22 N -0.509 5.509 23 Si 0.726 3.274 24 H -0.196 1.196 25 H -0.213 1.213 26 H -0.169 1.169 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.118 0.882 31 H 0.127 0.873 32 H 0.182 0.818 33 H 0.164 0.836 34 H 0.183 0.817 35 H 0.138 0.862 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.155 0.845 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.793 13.791 4.604 16.992 hybrid contribution 0.531 0.594 -1.356 1.573 sum -8.262 14.386 3.249 16.904 Atomic orbital electron populations 1.21977 0.79369 1.03810 1.01357 1.47691 1.06919 1.04683 1.75970 1.19971 0.99770 0.85988 0.88012 1.23782 0.85703 0.89320 0.98101 1.68418 1.20955 1.19854 1.10532 1.23332 0.98375 0.89913 0.89985 1.22920 0.97421 1.01980 1.02975 1.23159 0.95050 0.94290 0.89981 1.68228 1.31293 1.12605 1.10725 1.18313 0.87046 0.83060 0.75330 1.90802 1.13478 1.86763 1.46777 1.18740 1.02562 0.95621 1.05195 1.20855 0.92272 0.96910 0.96330 1.20556 1.03442 0.95441 1.04126 1.20956 0.94799 0.97849 0.93738 1.21254 0.99105 0.98947 1.05047 1.18938 0.87122 0.91666 0.88100 1.83638 1.39042 1.38758 1.47405 1.20831 1.09868 0.93673 1.22425 0.87447 1.24476 0.95778 0.98692 0.94531 1.69640 1.23885 1.30730 1.26601 0.86195 0.80690 0.83615 0.76882 1.19569 1.21285 1.16945 0.92652 0.91286 0.90054 0.88176 0.87281 0.81798 0.83605 0.81651 0.86223 0.86896 0.86831 0.84462 0.90928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.98 9.06 59.84 0.54 1.53 16 2 N -0.62 -10.24 2.86 -184.20 -0.53 -10.76 16 3 C 0.19 2.83 5.88 -5.19 -0.03 2.80 16 4 C 0.30 4.96 7.22 -157.20 -1.14 3.82 16 5 N -0.48 -9.01 10.33 -10.73 -0.11 -9.12 16 6 C 0.15 2.29 11.30 -17.20 -0.19 2.09 16 7 C -0.23 -2.69 10.17 -39.32 -0.40 -3.09 16 8 C 0.14 1.65 11.30 -17.20 -0.19 1.45 16 9 N -0.51 -7.35 10.33 -10.73 -0.11 -7.46 16 10 C 0.57 12.13 6.98 -12.47 -0.09 12.05 16 11 O -0.51 -12.71 16.04 -4.96 -0.08 -12.79 16 12 C -0.22 -4.52 4.94 -104.81 -0.52 -5.04 16 13 C -0.05 -0.74 7.59 -39.20 -0.30 -1.04 16 14 C -0.22 -3.38 10.03 -39.61 -0.40 -3.78 16 15 C -0.05 -0.95 10.03 -39.53 -0.40 -1.34 16 16 C -0.22 -4.80 9.16 -39.44 -0.36 -5.16 16 17 C 0.20 4.75 6.63 -38.60 -0.26 4.50 16 18 O -0.19 -5.21 7.60 -9.45 -0.07 -5.28 16 19 C -0.39 -11.38 9.95 30.90 0.31 -11.07 16 20 H 0.11 3.10 5.44 -52.48 -0.29 2.82 16 21 C 0.07 2.03 5.49 -17.52 -0.10 1.94 16 22 N -0.87 -25.56 13.96 55.48 0.77 -24.79 16 23 Si 0.90 23.29 28.62 -169.99 -4.86 18.43 16 24 H -0.27 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.25 -6.57 7.11 56.52 0.40 -6.17 16 27 H 0.05 0.54 7.48 -51.93 -0.39 0.16 16 28 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 29 H 0.08 1.12 5.69 -51.93 -0.30 0.83 16 30 H 0.10 1.14 8.07 -51.93 -0.42 0.72 16 31 H 0.11 1.77 7.36 -51.93 -0.38 1.39 16 32 H 0.16 2.20 8.06 -52.49 -0.42 1.78 16 33 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 34 H 0.17 1.26 8.06 -52.48 -0.42 0.84 16 35 H 0.12 1.58 6.43 -52.49 -0.34 1.24 16 36 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 37 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 38 H 0.14 3.05 5.64 -52.48 -0.30 2.76 16 39 H 0.28 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 339.64 15.07 5.12 5.12 Total: -1.00 -35.90 339.64 -7.46 -43.36 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -4.07 Total: 3.63 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: -3.52 Total: -0.35 kcal Atomic # 7 Polarization: -52.15 SS G_CDS: 0.03 Total: -52.12 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -0.15 Total: -18.07 kcal Atomic # 14 Polarization: 23.29 SS G_CDS: -4.86 Total: 18.43 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.90 -7.46 -43.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001471461066.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.457 kcal (2) G-P(sol) polarization free energy of solvation -35.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds