Wall clock time and date at job start Tue Mar 31 2020 10:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46502 * 120.00173 * 2 1 4 4 C 1.50698 * 109.46992 * 269.99754 * 3 2 1 5 5 N 1.31790 * 119.12424 * 269.72337 * 4 3 2 6 6 C 1.32340 * 120.81752 * 179.75944 * 5 4 3 7 7 C 1.38591 * 119.10473 * 0.50994 * 6 5 4 8 8 C 1.38598 * 118.39830 * 359.74592 * 7 6 5 9 9 N 1.31798 * 119.12166 * 89.99652 * 4 3 2 10 10 C 1.34772 * 120.00091 * 179.97438 * 2 1 3 11 11 O 1.21596 * 120.00235 * 184.32379 * 10 2 1 12 12 C 1.47539 * 120.00132 * 4.32672 * 10 2 1 13 13 C 1.39667 * 120.19569 * 312.04578 * 12 10 2 14 14 C 1.37824 * 119.92096 * 180.02562 * 13 12 10 15 15 C 1.38579 * 120.32155 * 359.97240 * 14 13 12 16 16 C 1.38022 * 120.39888 * 0.02562 * 15 14 13 17 17 C 1.38830 * 120.07471 * 0.02562 * 16 15 14 18 18 O 1.35522 * 120.15746 * 179.97438 * 17 16 15 19 19 C 1.34811 * 117.00412 * 353.90655 * 18 17 16 20 20 H 1.08003 * 119.99992 * 5.27214 * 19 18 17 21 21 C 1.38699 * 120.00242 * 185.26667 * 19 18 17 22 22 N 1.31519 * 119.99896 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 120.00055 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47306 * 89.99500 * 23 21 19 25 25 H 1.48492 * 109.47346 * 209.99862 * 23 21 19 26 26 H 1.48500 * 109.46694 * 329.99691 * 23 21 19 27 27 H 1.08997 * 109.47208 * 272.35348 * 1 2 3 28 28 H 1.09000 * 109.46827 * 32.35374 * 1 2 3 29 29 H 1.09005 * 109.47197 * 152.35276 * 1 2 3 30 30 H 1.09001 * 109.47220 * 29.99762 * 3 2 1 31 31 H 1.08998 * 109.47418 * 149.99760 * 3 2 1 32 32 H 1.07999 * 120.44189 * 180.23902 * 6 5 4 33 33 H 1.07996 * 120.80132 * 179.77585 * 7 6 5 34 34 H 1.08003 * 120.44245 * 180.02562 * 8 7 6 35 35 H 1.07999 * 120.04017 * 359.97438 * 13 12 10 36 36 H 1.07994 * 119.83789 * 179.97438 * 14 13 12 37 37 H 1.08001 * 119.79754 * 179.74771 * 15 14 13 38 38 H 1.08007 * 119.95937 * 179.97438 * 16 15 14 39 39 H 0.97004 * 119.99558 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 7 3.5553 1.3177 -2.0236 6 6 3.8075 1.6762 -3.2723 7 6 2.8949 2.4763 -3.9414 8 6 1.7453 2.8662 -3.2725 9 7 1.5585 2.4645 -2.0256 10 6 2.1388 -1.1672 0.0005 11 8 3.3522 -1.1686 0.0799 12 6 1.4043 -2.4431 -0.0953 13 6 0.2969 -2.6793 0.7223 14 6 -0.3848 -3.8735 0.6284 15 6 0.0228 -4.8426 -0.2744 16 6 1.1153 -4.6231 -1.0888 17 6 1.8146 -3.4266 -1.0073 18 8 2.8879 -3.2096 -1.8058 19 6 3.3028 -4.2415 -2.5676 20 1 2.7348 -5.1599 -2.5884 21 6 4.4588 -4.1238 -3.3249 22 7 4.8637 -5.1308 -4.0677 23 14 5.4414 -2.5355 -3.2886 24 1 6.4549 -2.6050 -2.2054 25 1 6.1239 -2.3458 -4.5937 26 1 4.5264 -1.3931 -3.0378 27 1 -0.3633 0.0422 1.0268 28 1 -0.3633 0.8681 -0.5500 29 1 -0.3634 -0.9104 -0.4769 30 1 1.6084 2.0284 0.5138 31 1 3.1499 1.1384 0.5139 32 1 4.7144 1.3532 -3.7618 33 1 3.0748 2.7880 -4.9597 34 1 1.0117 3.4893 -3.7626 35 1 -0.0244 -1.9274 1.4278 36 1 -1.2406 -4.0548 1.2616 37 1 -0.5151 -5.7770 -0.3381 38 1 1.4270 -5.3835 -1.7897 39 1 5.6724 -5.0485 -4.5970 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001471461066.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:54 Heat of formation + Delta-G solvation = 9.897198 kcal Electronic energy + Delta-G solvation = -26058.511268 eV Core-core repulsion = 22353.103336 eV Total energy + Delta-G solvation = -3705.407932 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.12597 -41.44174 -40.04158 -38.20170 -36.71209 -34.73192 -34.55556 -33.72814 -32.08556 -30.85893 -29.10602 -27.52916 -27.20542 -25.53635 -24.72919 -23.58516 -22.94283 -20.91572 -19.91497 -19.04855 -18.57403 -18.19735 -17.88676 -17.40670 -16.76260 -16.61191 -16.20115 -15.90241 -15.69830 -15.58459 -15.42331 -15.23658 -14.56897 -14.43334 -14.36926 -14.18073 -14.05452 -13.71715 -13.43175 -13.20076 -12.95833 -12.76904 -12.55225 -12.34616 -12.12007 -11.95629 -11.85964 -11.55127 -11.01593 -10.92176 -10.53751 -10.25108 -9.85075 -9.78380 -9.17386 -8.61061 -6.30556 -0.20658 0.11089 0.15874 0.62000 1.15557 1.27352 1.49090 1.69582 2.06302 2.22797 2.69425 2.83034 2.91397 2.94995 3.11313 3.16779 3.66901 3.68573 4.03542 4.05341 4.12605 4.19777 4.28311 4.29992 4.35740 4.49760 4.56510 4.60090 4.72406 4.79684 4.83108 4.93842 5.06315 5.28151 5.37815 5.46335 5.48558 5.60537 5.66909 5.81678 5.99925 6.14134 6.31788 6.75197 7.07978 7.21275 7.53104 8.49613 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.009947 B = 0.007223 C = 0.004664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2814.156890 B = 3875.415951 C = 6002.587026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.607 5.607 3 C 0.186 3.814 4 C 0.279 3.721 5 N -0.539 5.539 6 C 0.115 3.885 7 C -0.212 4.212 8 C 0.141 3.859 9 N -0.514 5.514 10 C 0.564 3.436 11 O -0.562 6.562 12 C -0.223 4.223 13 C -0.034 4.034 14 C -0.182 4.182 15 C -0.048 4.048 16 C -0.245 4.245 17 C 0.154 3.846 18 O -0.230 6.230 19 C -0.398 4.398 20 H 0.092 0.908 21 C 0.024 3.976 22 N -0.911 5.911 23 Si 0.958 3.042 24 H -0.286 1.286 25 H -0.259 1.259 26 H -0.267 1.267 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.142 0.858 31 H 0.086 0.914 32 H 0.167 0.833 33 H 0.188 0.812 34 H 0.214 0.786 35 H 0.165 0.835 36 H 0.169 0.831 37 H 0.152 0.848 38 H 0.114 0.886 39 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.887 16.149 5.274 21.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.341 5.341 3 C 0.062 3.938 4 C 0.010 3.990 5 N -0.254 5.254 6 C -0.049 4.049 7 C -0.233 4.233 8 C -0.025 4.025 9 N -0.228 5.228 10 C 0.354 3.646 11 O -0.439 6.439 12 C -0.228 4.228 13 C -0.052 4.052 14 C -0.200 4.200 15 C -0.066 4.066 16 C -0.265 4.265 17 C 0.102 3.898 18 O -0.135 6.135 19 C -0.474 4.474 20 H 0.109 0.891 21 C -0.176 4.176 22 N -0.552 5.552 23 Si 0.782 3.218 24 H -0.212 1.212 25 H -0.183 1.183 26 H -0.192 1.192 27 H 0.115 0.885 28 H 0.102 0.898 29 H 0.089 0.911 30 H 0.159 0.841 31 H 0.104 0.896 32 H 0.184 0.816 33 H 0.205 0.795 34 H 0.231 0.769 35 H 0.183 0.817 36 H 0.187 0.813 37 H 0.169 0.831 38 H 0.132 0.868 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.105 15.983 6.069 21.541 hybrid contribution 1.447 0.011 -1.568 2.134 sum -11.658 15.994 4.501 20.297 Atomic orbital electron populations 1.22267 0.76552 1.03986 1.04095 1.47716 1.08600 1.03849 1.73940 1.20140 0.99497 0.86076 0.88100 1.23857 0.86009 0.90523 0.98643 1.68330 1.22795 1.21761 1.12514 1.23644 0.99934 0.91528 0.89821 1.23323 0.96073 0.99575 1.04334 1.24020 0.95718 0.93680 0.89104 1.68269 1.30437 1.12171 1.11947 1.18540 0.86542 0.84499 0.75006 1.90770 1.15860 1.87687 1.49615 1.19153 1.03657 0.95043 1.04908 1.21402 0.90155 0.98425 0.95258 1.21246 1.03271 0.93421 1.02041 1.21428 0.92951 0.99901 0.92298 1.21300 1.00998 0.97863 1.06302 1.19646 0.86987 0.93840 0.89308 1.83615 1.41801 1.38391 1.49731 1.20804 1.09940 0.93861 1.22810 0.89088 1.25033 0.96711 1.00866 0.94956 1.69682 1.25055 1.31914 1.28521 0.85400 0.78792 0.80283 0.77321 1.21233 1.18300 1.19177 0.88520 0.89780 0.91133 0.84058 0.89597 0.81626 0.79513 0.76926 0.81749 0.81325 0.83058 0.86800 0.90480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.54 9.06 127.77 1.16 2.69 16 2 N -0.61 -19.37 2.86 -854.93 -2.44 -21.81 16 3 C 0.19 5.54 5.88 85.63 0.50 6.04 16 4 C 0.28 9.18 7.22 138.75 1.00 10.18 16 5 N -0.54 -20.93 10.33 -187.85 -1.94 -22.87 16 6 C 0.12 3.60 11.30 84.70 0.96 4.55 16 7 C -0.21 -4.51 10.17 22.44 0.23 -4.28 16 8 C 0.14 2.85 11.30 84.70 0.96 3.80 16 9 N -0.51 -13.61 10.33 -187.85 -1.94 -15.55 16 10 C 0.56 24.22 6.98 86.70 0.60 24.82 16 11 O -0.56 -29.91 16.04 5.78 0.09 -29.82 16 12 C -0.22 -9.19 4.94 -19.99 -0.10 -9.29 16 13 C -0.03 -0.98 7.59 22.52 0.17 -0.81 16 14 C -0.18 -4.59 10.03 22.25 0.22 -4.36 16 15 C -0.05 -1.49 10.03 22.30 0.22 -1.26 16 16 C -0.25 -10.69 9.16 22.36 0.20 -10.49 16 17 C 0.15 7.68 6.63 22.90 0.15 7.83 16 18 O -0.23 -13.73 7.60 -10.25 -0.08 -13.81 16 19 C -0.40 -24.81 9.95 67.93 0.68 -24.14 16 20 H 0.09 5.74 5.44 -2.91 -0.02 5.72 16 21 C 0.02 1.50 5.49 84.85 0.47 1.96 16 22 N -0.91 -56.45 13.96 21.62 0.30 -56.15 16 23 Si 0.96 51.79 28.62 68.60 1.96 53.75 16 24 H -0.29 -15.90 7.11 99.48 0.71 -15.19 16 25 H -0.26 -12.49 7.11 99.48 0.71 -11.78 16 26 H -0.27 -15.23 7.11 99.48 0.71 -14.53 16 27 H 0.10 1.31 7.48 -2.39 -0.02 1.29 16 28 H 0.08 1.59 8.09 -2.39 -0.02 1.57 16 29 H 0.07 1.68 5.69 -2.38 -0.01 1.66 16 30 H 0.14 2.87 8.07 -2.39 -0.02 2.85 16 31 H 0.09 2.93 7.36 -2.39 -0.02 2.91 16 32 H 0.17 4.74 8.06 -2.91 -0.02 4.71 16 33 H 0.19 2.31 8.06 -2.91 -0.02 2.29 16 34 H 0.21 2.15 8.06 -2.91 -0.02 2.13 16 35 H 0.17 3.25 6.43 -2.91 -0.02 3.23 16 36 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 37 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 38 H 0.11 5.42 5.64 -2.91 -0.02 5.41 16 39 H 0.29 16.26 8.31 -92.71 -0.77 15.49 16 Total: -1.00 -89.55 339.64 4.48 -85.07 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 1.09 Total: 13.93 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: 7.43 Total: 7.26 kcal Atomic # 7 Polarization: -110.36 SS G_CDS: -6.02 Total: -116.38 kcal Atomic # 8 Polarization: -43.64 SS G_CDS: 0.01 Total: -43.63 kcal Atomic # 14 Polarization: 51.79 SS G_CDS: 1.96 Total: 53.75 kcal Total: -89.55 4.48 -85.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001471461066.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.967 kcal (2) G-P(sol) polarization free energy of solvation -89.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds