Wall clock time and date at job start Tue Mar 31 2020 10:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21247 * 120.00262 * 2 1 4 4 C 1.47166 * 119.99891 * 180.02562 * 2 1 3 5 5 C 1.39846 * 120.17269 * 179.97438 * 4 2 1 6 6 C 1.37887 * 119.82819 * 180.02562 * 5 4 2 7 7 C 1.38411 * 120.17111 * 0.02767 * 6 5 4 8 8 C 1.50700 * 119.82459 * 179.97438 * 7 6 5 9 9 C 1.50708 * 109.46757 * 90.00056 * 8 7 6 10 10 O 1.21296 * 119.99942 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99829 * 179.97438 * 9 8 7 12 12 C 1.40585 * 119.99909 * 179.97438 * 11 9 8 13 13 C 1.40645 * 126.08375 * 0.02562 * 12 11 9 14 14 N 1.30914 * 108.39140 * 179.71485 * 13 12 11 15 15 N 1.40076 * 108.40071 * 0.44717 * 14 13 12 16 16 C 1.37323 * 126.06590 * 179.81421 * 15 14 13 17 17 H 1.08002 * 119.99553 * 179.68479 * 16 15 14 18 18 C 1.38981 * 119.99998 * 359.96616 * 16 15 14 19 19 N 1.31294 * 120.00080 * 359.72332 * 18 16 15 20 20 Si 1.86801 * 119.99841 * 179.72367 * 18 16 15 21 21 H 1.48504 * 109.47266 * 60.00169 * 20 18 16 22 22 H 1.48504 * 109.46970 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47383 * 299.99575 * 20 18 16 24 24 C 1.35687 * 126.08190 * 180.02562 * 12 11 9 25 25 C 1.38397 * 120.34558 * 0.23180 * 7 6 5 26 26 C 1.37890 * 120.17399 * 359.48459 * 25 7 6 27 27 H 1.09005 * 109.46696 * 239.99944 * 1 2 3 28 28 H 1.08998 * 109.47289 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47351 * 120.00002 * 1 2 3 30 30 H 1.08005 * 120.08962 * 0.02562 * 5 4 2 31 31 H 1.07998 * 119.91719 * 179.97438 * 6 5 4 32 32 H 1.09000 * 109.47090 * 330.00466 * 8 7 6 33 33 H 1.08999 * 109.47237 * 209.99839 * 8 7 6 34 34 H 0.97006 * 119.99896 * 0.02562 * 11 9 8 35 35 H 1.07999 * 125.80591 * 359.97438 * 13 12 11 36 36 H 0.97009 * 120.00129 * 180.02562 * 19 18 16 37 37 H 1.07999 * 126.24701 * 0.03361 * 24 12 11 38 38 H 1.08001 * 119.91290 * 179.72360 * 25 7 6 39 39 H 1.08004 * 120.08540 * 180.23803 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2428 -1.2745 -0.0006 5 6 3.6413 -1.2787 -0.0011 6 6 4.3235 -2.4770 -0.0022 7 6 3.6278 -3.6736 -0.0033 8 6 4.3813 -4.9787 -0.0050 9 6 4.6330 -5.4153 1.4153 10 8 4.2395 -4.7334 2.3381 11 7 5.2952 -6.5633 1.6601 12 6 5.5304 -6.9704 2.9850 13 6 5.1335 -6.2824 4.1458 14 7 5.5242 -6.9713 5.1881 15 7 6.1924 -8.1165 4.7362 16 6 6.7541 -9.0893 5.5260 17 1 7.2438 -9.9378 5.0713 18 6 6.6874 -8.9850 6.9102 19 7 6.0920 -7.9535 7.4629 20 14 7.4448 -10.3123 7.9845 21 1 8.8995 -10.4077 7.7017 22 1 7.2407 -9.9679 9.4146 23 1 6.7969 -11.6159 7.6915 24 6 6.1807 -8.0968 3.3715 25 6 2.2439 -3.6777 -0.0082 26 6 1.5472 -2.4878 -0.0012 27 1 -0.3633 -0.5139 0.8900 28 1 -0.3634 1.0276 0.0005 29 1 -0.3634 -0.5138 -0.8900 30 1 4.1856 -0.3459 -0.0007 31 1 5.4035 -2.4820 -0.0030 32 1 5.3336 -4.8477 -0.5190 33 1 3.7921 -5.7378 -0.5195 34 1 5.6101 -7.1084 0.9220 35 1 4.5941 -5.3472 4.1726 36 1 6.0457 -7.8805 8.4291 37 1 6.6111 -8.8415 2.7184 38 1 1.7081 -4.6154 -0.0135 39 1 0.4672 -2.4927 -0.0012 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649692760.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:15:42 Heat of formation + Delta-G solvation = 34.038875 kcal Electronic energy + Delta-G solvation = -23950.609687 eV Core-core repulsion = 20246.248617 eV Total energy + Delta-G solvation = -3704.361070 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.32700 -39.83015 -38.91033 -37.94653 -34.23020 -33.28831 -33.05533 -31.43528 -30.38808 -30.12347 -28.39189 -27.10513 -24.82642 -23.09506 -22.67405 -21.05983 -20.36021 -19.83333 -19.41152 -17.55093 -17.19189 -16.42530 -16.03517 -15.69025 -15.44478 -15.17613 -14.99363 -14.88233 -14.32439 -14.10653 -13.91506 -13.65076 -13.48270 -13.21411 -12.91664 -12.61453 -12.51614 -12.22262 -12.05853 -11.80939 -11.65409 -11.42528 -11.24834 -11.13629 -10.97056 -10.56729 -10.16047 -9.95453 -9.30261 -9.16881 -9.08359 -8.86051 -8.78393 -8.06626 -6.70970 -6.56067 -4.23538 0.50453 1.29649 2.22627 2.81654 3.03291 3.03951 3.08233 3.47991 3.66806 3.77326 3.86496 3.94319 4.40443 4.52491 4.59422 4.76560 4.80943 4.83790 5.00698 5.02471 5.11661 5.18945 5.24834 5.28981 5.37200 5.45790 5.63139 5.76725 5.88369 6.12743 6.23044 6.26602 6.41758 6.45072 6.75643 6.89589 6.94984 7.11560 7.23747 7.32391 7.85192 8.16778 8.27883 8.62780 8.84839 9.37312 9.66596 10.39850 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.029170 B = 0.002303 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.663108 B =12155.199884 C =12654.097675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.396 3.604 3 O -0.463 6.463 4 C -0.181 4.181 5 C -0.059 4.059 6 C -0.118 4.118 7 C -0.022 4.022 8 C -0.106 4.106 9 C 0.499 3.501 10 O -0.527 6.527 11 N -0.625 5.625 12 C -0.060 4.060 13 C -0.033 4.033 14 N -0.261 5.261 15 N -0.143 5.143 16 C -0.324 4.324 17 H 0.116 0.884 18 C 0.046 3.954 19 N -0.770 5.770 20 Si 0.935 3.065 21 H -0.267 1.267 22 H -0.277 1.277 23 H -0.267 1.267 24 C -0.085 4.085 25 C -0.119 4.119 26 C -0.070 4.070 27 H 0.095 0.905 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.131 0.869 31 H 0.128 0.872 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.397 0.603 35 H 0.175 0.825 36 H 0.275 0.725 37 H 0.145 0.855 38 H 0.128 0.872 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.091 5.909 -17.336 19.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.275 3.725 3 O -0.340 6.340 4 C -0.182 4.182 5 C -0.077 4.077 6 C -0.136 4.136 7 C -0.023 4.023 8 C -0.146 4.146 9 C 0.284 3.716 10 O -0.404 6.404 11 N -0.268 5.268 12 C -0.166 4.166 13 C -0.209 4.209 14 N -0.092 5.092 15 N 0.090 4.910 16 C -0.456 4.456 17 H 0.133 0.867 18 C -0.171 4.171 19 N -0.397 5.397 20 Si 0.758 3.242 21 H -0.192 1.192 22 H -0.201 1.201 23 H -0.192 1.192 24 C -0.236 4.236 25 C -0.137 4.137 26 C -0.088 4.088 27 H 0.113 0.887 28 H 0.102 0.898 29 H 0.111 0.889 30 H 0.149 0.851 31 H 0.146 0.854 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.230 0.770 35 H 0.192 0.808 36 H 0.086 0.914 37 H 0.163 0.837 38 H 0.146 0.854 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.098 7.002 -15.154 18.140 hybrid contribution 0.517 -1.107 -0.813 1.467 sum -6.580 5.896 -15.967 18.248 Atomic orbital electron populations 1.22252 0.93847 1.05025 1.04606 1.22525 0.91658 0.87650 0.70640 1.90526 1.72254 1.34409 1.36781 1.20448 0.94655 0.94624 1.08442 1.21342 0.93149 0.98521 0.94673 1.20999 1.00260 0.91571 1.00747 1.19597 0.93693 0.93953 0.95044 1.20742 1.02165 0.95808 0.95910 1.20139 0.79657 0.81344 0.90459 1.90636 1.50724 1.53620 1.45404 1.42511 1.55249 1.22571 1.06462 1.17265 1.15900 0.99904 0.83499 1.24109 1.06088 1.02042 0.88648 1.78265 1.15519 0.95629 1.19794 1.44547 1.30528 1.13921 1.02033 1.19816 1.36136 1.01408 0.88239 0.86684 1.25641 0.96228 0.97728 0.97530 1.70210 1.31960 1.25535 1.11955 0.85899 0.79633 0.79978 0.78653 1.19161 1.20134 1.19165 1.21259 1.13996 1.01879 0.86444 1.20975 0.93518 0.98324 1.00875 1.21346 0.99867 0.91359 0.96270 0.88695 0.89829 0.88861 0.85075 0.85429 0.87921 0.87900 0.77036 0.80791 0.91402 0.83742 0.85396 0.85133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.35 8.93 36.01 0.32 -1.03 16 2 C 0.40 4.31 7.23 -30.68 -0.22 4.09 16 3 O -0.46 -6.58 17.08 5.59 0.10 -6.49 16 4 C -0.18 -2.04 5.87 -105.07 -0.62 -2.66 16 5 C -0.06 -0.71 9.60 -39.11 -0.38 -1.08 16 6 C -0.12 -1.39 9.68 -39.65 -0.38 -1.77 16 7 C -0.02 -0.26 4.38 -104.50 -0.46 -0.72 16 8 C -0.11 -1.10 5.82 -29.03 -0.17 -1.27 16 9 C 0.50 8.05 7.79 -10.98 -0.09 7.96 16 10 O -0.53 -10.94 13.19 5.54 0.07 -10.87 16 11 N -0.63 -10.43 5.47 -10.00 -0.05 -10.49 16 12 C -0.06 -1.36 6.90 -83.84 -0.58 -1.94 16 13 C -0.03 -0.88 10.85 -17.03 -0.18 -1.06 16 14 N -0.26 -7.61 10.40 30.80 0.32 -7.29 16 15 N -0.14 -3.91 3.74 -11.41 -0.04 -3.95 16 16 C -0.32 -8.54 10.25 -14.82 -0.15 -8.69 16 17 H 0.12 2.69 7.83 -52.49 -0.41 2.28 16 18 C 0.05 1.19 5.50 -17.51 -0.10 1.09 16 19 N -0.77 -21.59 11.81 55.49 0.66 -20.93 16 20 Si 0.93 18.87 29.55 -169.99 -5.02 13.84 16 21 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 22 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 23 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16 24 C -0.08 -1.97 11.49 -16.39 -0.19 -2.16 16 25 C -0.12 -1.27 9.67 -39.65 -0.38 -1.65 16 26 C -0.07 -0.69 9.47 -39.10 -0.37 -1.06 16 27 H 0.09 0.53 8.09 -51.93 -0.42 0.11 16 28 H 0.08 0.55 8.12 -51.93 -0.42 0.13 16 29 H 0.09 0.43 8.09 -51.93 -0.42 0.01 16 30 H 0.13 1.53 7.65 -52.48 -0.40 1.12 16 31 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 32 H 0.10 0.81 8.08 -51.93 -0.42 0.39 16 33 H 0.10 0.78 8.08 -51.93 -0.42 0.36 16 34 H 0.40 4.87 8.83 -40.82 -0.36 4.51 16 35 H 0.18 4.58 5.92 -52.49 -0.31 4.27 16 36 H 0.28 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.15 2.77 8.06 -52.49 -0.42 2.35 16 38 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.13 0.87 7.05 -52.48 -0.37 0.50 16 LS Contribution 346.21 15.07 5.22 5.22 Total: -1.00 -36.23 346.21 -7.06 -43.29 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -4.36 Total: 9.62 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: -3.94 Total: -11.95 kcal Atomic # 7 Polarization: -43.54 SS G_CDS: 0.88 Total: -42.66 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: 0.17 Total: -17.35 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.02 Total: 13.84 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -36.23 -7.06 -43.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649692760.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.326 kcal (2) G-P(sol) polarization free energy of solvation -36.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds