Wall clock time and date at job start Tue Mar 31 2020 10:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21247 * 120.00262 * 2 1 4 4 C 1.47166 * 119.99891 * 180.02562 * 2 1 3 5 5 C 1.39846 * 120.17269 * 179.97438 * 4 2 1 6 6 C 1.37887 * 119.82819 * 180.02562 * 5 4 2 7 7 C 1.38411 * 120.17111 * 0.02767 * 6 5 4 8 8 C 1.50700 * 119.82459 * 179.97438 * 7 6 5 9 9 C 1.50708 * 109.46757 * 90.00056 * 8 7 6 10 10 O 1.21296 * 119.99942 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99829 * 179.97438 * 9 8 7 12 12 C 1.40585 * 119.99909 * 179.97438 * 11 9 8 13 13 C 1.40645 * 126.08375 * 0.02562 * 12 11 9 14 14 N 1.30914 * 108.39140 * 179.71485 * 13 12 11 15 15 N 1.40076 * 108.40071 * 0.44717 * 14 13 12 16 16 C 1.37323 * 126.06590 * 179.81421 * 15 14 13 17 17 H 1.08002 * 119.99553 * 179.68479 * 16 15 14 18 18 C 1.38981 * 119.99998 * 359.96616 * 16 15 14 19 19 N 1.31294 * 120.00080 * 359.72332 * 18 16 15 20 20 Si 1.86801 * 119.99841 * 179.72367 * 18 16 15 21 21 H 1.48504 * 109.47266 * 60.00169 * 20 18 16 22 22 H 1.48504 * 109.46970 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47383 * 299.99575 * 20 18 16 24 24 C 1.35687 * 126.08190 * 180.02562 * 12 11 9 25 25 C 1.38397 * 120.34558 * 0.23180 * 7 6 5 26 26 C 1.37890 * 120.17399 * 359.48459 * 25 7 6 27 27 H 1.09005 * 109.46696 * 239.99944 * 1 2 3 28 28 H 1.08998 * 109.47289 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47351 * 120.00002 * 1 2 3 30 30 H 1.08005 * 120.08962 * 0.02562 * 5 4 2 31 31 H 1.07998 * 119.91719 * 179.97438 * 6 5 4 32 32 H 1.09000 * 109.47090 * 330.00466 * 8 7 6 33 33 H 1.08999 * 109.47237 * 209.99839 * 8 7 6 34 34 H 0.97006 * 119.99896 * 0.02562 * 11 9 8 35 35 H 1.07999 * 125.80591 * 359.97438 * 13 12 11 36 36 H 0.97009 * 120.00129 * 180.02562 * 19 18 16 37 37 H 1.07999 * 126.24701 * 0.03361 * 24 12 11 38 38 H 1.08001 * 119.91290 * 179.72360 * 25 7 6 39 39 H 1.08004 * 120.08540 * 180.23803 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2428 -1.2745 -0.0006 5 6 3.6413 -1.2787 -0.0011 6 6 4.3235 -2.4770 -0.0022 7 6 3.6278 -3.6736 -0.0033 8 6 4.3813 -4.9787 -0.0050 9 6 4.6330 -5.4153 1.4153 10 8 4.2395 -4.7334 2.3381 11 7 5.2952 -6.5633 1.6601 12 6 5.5304 -6.9704 2.9850 13 6 5.1335 -6.2824 4.1458 14 7 5.5242 -6.9713 5.1881 15 7 6.1924 -8.1165 4.7362 16 6 6.7541 -9.0893 5.5260 17 1 7.2438 -9.9378 5.0713 18 6 6.6874 -8.9850 6.9102 19 7 6.0920 -7.9535 7.4629 20 14 7.4448 -10.3123 7.9845 21 1 8.8995 -10.4077 7.7017 22 1 7.2407 -9.9679 9.4146 23 1 6.7969 -11.6159 7.6915 24 6 6.1807 -8.0968 3.3715 25 6 2.2439 -3.6777 -0.0082 26 6 1.5472 -2.4878 -0.0012 27 1 -0.3633 -0.5139 0.8900 28 1 -0.3634 1.0276 0.0005 29 1 -0.3634 -0.5138 -0.8900 30 1 4.1856 -0.3459 -0.0007 31 1 5.4035 -2.4820 -0.0030 32 1 5.3336 -4.8477 -0.5190 33 1 3.7921 -5.7378 -0.5195 34 1 5.6101 -7.1084 0.9220 35 1 4.5941 -5.3472 4.1726 36 1 6.0457 -7.8805 8.4291 37 1 6.6111 -8.8415 2.7184 38 1 1.7081 -4.6154 -0.0135 39 1 0.4672 -2.4927 -0.0012 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649692760.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:15:41 Heat of formation + Delta-G solvation = 9.744931 kcal Electronic energy + Delta-G solvation = -23951.663151 eV Core-core repulsion = 20246.248617 eV Total energy + Delta-G solvation = -3705.414535 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.71299 -41.06262 -40.24775 -39.02098 -35.88393 -34.92745 -34.09603 -32.31518 -32.15545 -31.04406 -29.80693 -28.35978 -26.65361 -24.07808 -23.51483 -22.82500 -21.79833 -21.14498 -20.70631 -19.30217 -18.10975 -17.73220 -17.35549 -16.99699 -16.91615 -16.14580 -16.06606 -15.99903 -15.66621 -15.29555 -15.05953 -14.87811 -14.75951 -14.74211 -14.43130 -13.49939 -13.34491 -13.27527 -13.09027 -12.99941 -12.98318 -12.85629 -12.79983 -12.60260 -12.13955 -11.94009 -11.77500 -10.97557 -10.81870 -10.80448 -10.66563 -10.08415 -9.91709 -9.75083 -8.48848 -8.45684 -6.22778 -0.35517 0.46175 1.25844 1.37642 1.40412 1.56395 1.57999 1.90399 2.09267 2.37045 2.56632 2.82884 3.03725 3.10406 3.11838 3.66006 3.82266 4.02168 4.14809 4.16209 4.32165 4.43575 4.46501 4.58612 4.64467 4.65533 4.67059 4.70302 4.91199 5.01784 5.07971 5.10624 5.14655 5.31145 5.32189 5.45471 5.53551 5.57220 5.94807 5.97770 6.35105 6.51483 6.76258 6.83803 7.46120 7.52076 7.71716 8.53544 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.029170 B = 0.002303 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.663108 B =12155.199884 C =12654.097675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.394 3.606 3 O -0.509 6.509 4 C -0.196 4.196 5 C -0.081 4.081 6 C -0.131 4.131 7 C -0.038 4.038 8 C -0.090 4.090 9 C 0.497 3.503 10 O -0.576 6.576 11 N -0.617 5.617 12 C -0.041 4.041 13 C -0.062 4.062 14 N -0.313 5.313 15 N -0.170 5.170 16 C -0.354 4.354 17 H 0.141 0.859 18 C -0.008 4.008 19 N -0.827 5.827 20 Si 1.019 2.981 21 H -0.253 1.253 22 H -0.280 1.280 23 H -0.252 1.252 24 C -0.081 4.081 25 C -0.128 4.128 26 C -0.063 4.063 27 H 0.112 0.888 28 H 0.084 0.916 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.143 0.857 34 H 0.422 0.578 35 H 0.165 0.835 36 H 0.275 0.725 37 H 0.189 0.811 38 H 0.149 0.851 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.561 3.610 -19.666 21.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.276 3.724 3 O -0.389 6.389 4 C -0.197 4.197 5 C -0.100 4.100 6 C -0.149 4.149 7 C -0.039 4.039 8 C -0.129 4.129 9 C 0.286 3.714 10 O -0.455 6.455 11 N -0.263 5.263 12 C -0.147 4.147 13 C -0.237 4.237 14 N -0.146 5.146 15 N 0.060 4.940 16 C -0.485 4.485 17 H 0.159 0.841 18 C -0.219 4.219 19 N -0.455 5.455 20 Si 0.838 3.162 21 H -0.177 1.177 22 H -0.205 1.205 23 H -0.176 1.176 24 C -0.232 4.232 25 C -0.145 4.145 26 C -0.081 4.081 27 H 0.130 0.870 28 H 0.103 0.897 29 H 0.140 0.860 30 H 0.140 0.860 31 H 0.152 0.848 32 H 0.152 0.848 33 H 0.160 0.840 34 H 0.260 0.740 35 H 0.181 0.819 36 H 0.085 0.915 37 H 0.206 0.794 38 H 0.167 0.833 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -7.568 4.680 -17.567 19.692 hybrid contribution 0.603 -0.300 -0.253 0.719 sum -6.965 4.380 -17.820 19.628 Atomic orbital electron populations 1.22287 0.90223 1.05892 1.06655 1.23170 0.93632 0.86744 0.68848 1.90511 1.73496 1.35695 1.39185 1.20718 0.94529 0.95769 1.08707 1.21463 0.94121 0.98521 0.95866 1.21172 1.00801 0.91835 1.01093 1.19844 0.94471 0.94210 0.95352 1.20767 1.04425 0.95977 0.91766 1.21249 0.77642 0.80054 0.92466 1.90631 1.52289 1.54892 1.47723 1.42494 1.55611 1.23442 1.04752 1.17336 1.13472 0.98596 0.85327 1.24147 1.07204 1.02240 0.90151 1.78153 1.17261 0.97296 1.21846 1.44835 1.31542 1.13956 1.03622 1.20567 1.36722 1.02135 0.89109 0.84135 1.26887 0.96110 1.00043 0.98909 1.70404 1.34499 1.28412 1.12196 0.84659 0.79095 0.76700 0.75785 1.17727 1.20473 1.17620 1.22042 1.12864 1.02602 0.85651 1.21361 0.93451 0.99548 1.00185 1.21729 1.01632 0.90289 0.94474 0.86978 0.89741 0.85988 0.86039 0.84842 0.84756 0.83964 0.74034 0.81859 0.91502 0.79394 0.83302 0.81614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.18 8.93 71.24 0.64 -1.54 16 2 C 0.39 8.42 7.23 28.03 0.20 8.63 16 3 O -0.51 -15.03 17.08 -2.93 -0.05 -15.08 16 4 C -0.20 -4.32 5.87 -20.15 -0.12 -4.44 16 5 C -0.08 -2.02 9.60 22.58 0.22 -1.81 16 6 C -0.13 -3.04 9.68 22.23 0.22 -2.83 16 7 C -0.04 -0.81 4.38 -19.79 -0.09 -0.89 16 8 C -0.09 -1.54 5.82 29.10 0.17 -1.37 16 9 C 0.50 15.06 7.79 87.66 0.68 15.74 16 10 O -0.58 -23.90 13.19 -3.08 -0.04 -23.94 16 11 N -0.62 -19.02 5.47 -303.93 -1.66 -20.69 16 12 C -0.04 -1.82 6.90 37.73 0.26 -1.56 16 13 C -0.06 -3.38 10.85 85.42 0.93 -2.45 16 14 N -0.31 -19.01 10.40 -56.47 -0.59 -19.59 16 15 N -0.17 -9.42 3.74 -190.01 -0.71 -10.13 16 16 C -0.35 -18.70 10.25 84.01 0.86 -17.84 16 17 H 0.14 6.36 7.83 -2.91 -0.02 6.34 16 18 C -0.01 -0.43 5.50 84.95 0.47 0.04 16 19 N -0.83 -48.20 11.81 21.66 0.26 -47.94 16 20 Si 1.02 38.57 29.55 68.60 2.03 40.59 16 21 H -0.25 -8.94 7.11 99.48 0.71 -8.23 16 22 H -0.28 -10.57 7.11 99.48 0.71 -9.86 16 23 H -0.25 -8.86 7.11 99.48 0.71 -8.15 16 24 C -0.08 -3.67 11.49 83.38 0.96 -2.71 16 25 C -0.13 -2.39 9.67 22.23 0.22 -2.17 16 26 C -0.06 -1.09 9.47 22.58 0.21 -0.88 16 27 H 0.11 0.92 8.09 -2.38 -0.02 0.90 16 28 H 0.08 0.97 8.12 -2.39 -0.02 0.95 16 29 H 0.12 0.69 8.09 -2.39 -0.02 0.67 16 30 H 0.12 3.10 7.65 -2.91 -0.02 3.07 16 31 H 0.13 2.76 8.06 -2.91 -0.02 2.73 16 32 H 0.13 1.52 8.08 -2.39 -0.02 1.50 16 33 H 0.14 1.39 8.08 -2.39 -0.02 1.37 16 34 H 0.42 8.62 8.83 -92.70 -0.82 7.80 16 35 H 0.16 9.07 5.92 -2.91 -0.02 9.06 16 36 H 0.28 14.82 8.31 -92.70 -0.77 14.05 16 37 H 0.19 6.54 8.06 -2.91 -0.02 6.51 16 38 H 0.15 2.11 8.06 -2.91 -0.02 2.08 16 39 H 0.17 1.55 7.05 -2.91 -0.02 1.53 16 Total: -1.00 -85.87 346.21 5.34 -80.54 By element: Atomic # 1 Polarization: 32.04 SS G_CDS: 0.28 Total: 32.32 kcal Atomic # 6 Polarization: -21.90 SS G_CDS: 5.82 Total: -16.08 kcal Atomic # 7 Polarization: -95.65 SS G_CDS: -2.70 Total: -98.35 kcal Atomic # 8 Polarization: -38.93 SS G_CDS: -0.09 Total: -39.02 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 2.03 Total: 40.59 kcal Total: -85.87 5.34 -80.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649692760.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.282 kcal (2) G-P(sol) polarization free energy of solvation -85.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds