Wall clock time and date at job start Tue Mar 31 2020 11:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00143 * 2 1 4 4 H 1.48505 * 109.47216 * 239.99811 * 3 2 1 5 5 H 1.48502 * 109.47258 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47448 * 119.99738 * 3 2 1 7 7 C 1.37880 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00016 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00183 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47421 * 180.02562 * 9 7 2 11 11 C 1.38645 * 120.00353 * 89.99646 * 10 9 7 12 12 N 1.32434 * 119.15068 * 0.02562 * 11 10 9 13 13 C 1.32296 * 120.79258 * 179.97438 * 12 11 10 14 14 C 1.39012 * 119.13472 * 0.02562 * 13 12 11 15 15 O 1.36029 * 120.77383 * 180.02562 * 14 13 12 16 16 C 1.42899 * 117.00411 * 359.94754 * 15 14 13 17 17 F 1.39898 * 109.47091 * 300.00525 * 16 15 14 18 18 F 1.39898 * 109.46815 * 60.00276 * 16 15 14 19 19 C 1.39017 * 118.45284 * 359.97262 * 14 13 12 20 20 N 1.32299 * 119.13289 * 0.02562 * 19 14 13 21 21 C 1.46502 * 119.99660 * 270.00286 * 10 9 7 22 22 C 1.54269 * 110.03047 * 237.16289 * 21 10 9 23 23 C 1.54885 * 104.19633 * 217.10795 * 22 21 10 24 24 C 1.54890 * 102.75121 * 37.93999 * 23 22 21 25 25 C 1.53872 * 110.03362 * 119.99794 * 21 10 9 26 26 H 0.97000 * 119.99923 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47083 * 59.99830 * 9 7 2 28 28 H 1.09003 * 109.47265 * 300.00085 * 9 7 2 29 29 H 1.08003 * 120.43619 * 179.97438 * 13 12 11 30 30 H 1.08998 * 109.47163 * 180.02562 * 16 15 14 31 31 H 1.08002 * 120.43797 * 180.02562 * 19 14 13 32 32 H 1.08997 * 110.01596 * 358.60183 * 21 10 9 33 33 H 1.09004 * 110.48344 * 335.78723 * 22 21 10 34 34 H 1.09000 * 110.48318 * 98.42815 * 22 21 10 35 35 H 1.09005 * 110.75119 * 279.62626 * 23 22 21 36 36 H 1.08997 * 110.91766 * 156.33562 * 23 22 21 37 37 H 1.08995 * 110.48675 * 203.38077 * 24 23 22 38 38 H 1.08997 * 110.48122 * 80.73835 * 24 23 22 39 39 H 1.09002 * 110.03220 * 238.56738 * 25 21 10 40 40 H 1.09003 * 110.02946 * 359.97438 * 25 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0018 11 6 2.6526 -4.1391 1.2030 12 7 2.2102 -3.6228 2.3395 13 6 2.6173 -4.1002 3.5041 14 6 3.5209 -5.1564 3.5241 15 8 3.9612 -5.6735 4.7027 16 6 3.4543 -5.0817 5.9005 17 9 3.7985 -3.7261 5.9328 18 9 2.0616 -5.2101 5.9308 19 6 3.9632 -5.6726 2.3115 20 7 3.5134 -5.1453 1.1845 21 6 2.6800 -4.1700 -1.2664 22 6 2.3683 -5.6795 -1.3307 23 6 3.5962 -6.2905 -2.0504 24 6 4.7742 -5.4634 -1.4785 25 6 4.2096 -4.0326 -1.3604 26 1 -0.4850 0.8401 -0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6240 -2.5568 0.8903 29 1 2.2530 -3.6745 4.4275 30 1 3.8849 -5.5863 6.7655 31 1 4.6649 -6.4934 2.2895 32 1 2.2067 -3.6544 -2.1020 33 1 2.2704 -6.0919 -0.3265 34 1 1.4606 -5.8573 -1.9074 35 1 3.5178 -6.1563 -3.1293 36 1 3.7081 -7.3457 -1.8012 37 1 5.6222 -5.4835 -2.1630 38 1 5.0649 -5.8410 -0.4982 39 1 4.4788 -3.4510 -2.2421 40 1 4.5971 -3.5509 -0.4626 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166533607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:21 Heat of formation + Delta-G solvation = -79.590006 kcal Electronic energy + Delta-G solvation = -27055.235864 eV Core-core repulsion = 22927.551040 eV Total energy + Delta-G solvation = -4127.684823 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.134 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.34560 -47.35644 -40.75386 -38.64994 -37.50278 -34.72952 -33.12753 -32.48790 -29.99732 -28.25319 -27.99883 -26.62518 -25.44919 -24.31184 -23.12211 -21.58010 -20.32572 -19.75573 -18.93099 -18.58273 -17.91489 -16.80052 -16.40915 -16.36905 -15.70805 -15.21156 -15.00989 -14.72625 -14.55429 -14.17961 -13.74961 -13.66636 -13.47078 -13.43800 -13.23866 -12.89272 -12.76588 -12.33845 -12.15868 -11.69212 -11.45587 -11.17221 -10.97677 -10.80614 -10.69721 -10.65884 -10.54190 -10.38353 -10.14914 -10.08576 -9.96704 -9.75241 -8.98317 -8.50889 -8.37924 -6.92894 -6.02053 -4.08237 1.53721 1.61878 2.60627 3.31875 3.35923 3.38209 3.43629 3.56874 4.23774 4.31993 4.44294 4.62224 4.63467 4.72232 5.00680 5.08469 5.11107 5.28262 5.31098 5.42782 5.79920 5.83669 5.91443 5.99824 6.02741 6.08643 6.15300 6.28487 6.33896 6.44224 6.70317 6.75300 6.81196 6.88311 7.06507 7.33410 7.50140 7.77600 7.92912 8.22735 8.30482 8.83502 9.01193 9.56079 11.03670 Molecular weight = 313.13amu Principal moments of inertia in cm(-1) A = 0.009646 B = 0.005876 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2902.201616 B = 4764.142930 C = 6886.516308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.063 3.937 3 Si 0.896 3.104 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.255 3.745 10 N -0.553 5.553 11 C 0.558 3.442 12 N -0.515 5.515 13 C 0.143 3.857 14 C -0.106 4.106 15 O -0.316 6.316 16 C 0.408 3.592 17 F -0.201 7.201 18 F -0.202 7.202 19 C 0.183 3.817 20 N -0.538 5.538 21 C 0.162 3.838 22 C -0.130 4.130 23 C -0.114 4.114 24 C -0.112 4.112 25 C -0.121 4.121 26 H 0.263 0.737 27 H 0.033 0.967 28 H 0.050 0.950 29 H 0.161 0.839 30 H 0.177 0.823 31 H 0.166 0.834 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.049 0.951 38 H 0.076 0.924 39 H 0.058 0.942 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.077 -14.097 6.236 17.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.139 4.139 3 Si 0.723 3.277 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.073 0.927 9 C 0.136 3.864 10 N -0.264 5.264 11 C 0.203 3.797 12 N -0.237 5.237 13 C -0.029 4.029 14 C -0.158 4.158 15 O -0.232 6.232 16 C 0.317 3.683 17 F -0.183 7.183 18 F -0.184 7.184 19 C 0.013 3.987 20 N -0.262 5.262 21 C 0.057 3.943 22 C -0.169 4.169 23 C -0.152 4.152 24 C -0.149 4.149 25 C -0.159 4.159 26 H 0.073 0.927 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.178 0.822 30 H 0.194 0.806 31 H 0.183 0.817 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.095 0.905 39 H 0.077 0.923 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.558 -13.559 5.134 16.350 hybrid contribution 0.524 1.072 1.076 1.607 sum 8.082 -12.487 6.210 16.119 Atomic orbital electron populations 1.69915 1.05912 1.27069 1.50478 1.24889 0.94827 0.99008 0.95143 0.86601 0.79547 0.82919 0.78595 1.20298 1.21180 1.20306 1.21374 0.93219 0.90512 1.50968 0.92660 1.19421 0.86813 0.81537 0.98678 1.47186 1.45230 1.34398 0.99630 1.19435 0.87013 0.86208 0.87029 1.68093 1.28427 1.30249 0.96889 1.23348 0.91533 0.90728 0.97262 1.20194 1.06170 1.02680 0.86710 1.86525 1.66702 1.57964 1.11966 1.23331 0.76228 0.77951 0.90755 1.93112 1.91680 1.36812 1.96647 1.93100 1.33119 1.95482 1.96667 1.22263 0.95464 0.96819 0.84122 1.68335 1.15829 1.13955 1.28112 1.21582 0.94273 0.93118 0.85291 1.22758 0.97224 0.95447 1.01470 1.22325 0.95371 0.98705 0.98793 1.22255 0.96556 0.95208 1.00910 1.22388 0.95161 0.96866 1.01523 0.92687 0.94887 0.93216 0.82230 0.80646 0.81695 0.89125 0.90207 0.92547 0.92345 0.92249 0.93229 0.90542 0.92337 0.91617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.52 -14.59 9.39 -34.44 -0.32 -14.91 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.25 6.57 5.15 -5.20 -0.03 6.54 16 10 N -0.55 -12.07 2.49 -168.48 -0.42 -12.49 16 11 C 0.56 11.74 7.06 -322.62 -2.28 9.46 16 12 N -0.51 -11.40 9.11 -13.79 -0.13 -11.53 16 13 C 0.14 2.63 9.53 -17.06 -0.16 2.47 16 14 C -0.11 -1.65 6.51 -39.01 -0.25 -1.91 16 15 O -0.32 -3.94 10.46 -19.83 -0.21 -4.14 16 16 C 0.41 4.05 5.98 101.05 0.60 4.65 16 17 F -0.20 -2.50 15.64 2.25 0.04 -2.46 16 18 F -0.20 -2.41 15.63 2.25 0.04 -2.38 16 19 C 0.18 2.76 11.26 -17.06 -0.19 2.57 16 20 N -0.54 -9.48 4.98 -13.79 -0.07 -9.55 16 21 C 0.16 2.96 3.36 -66.81 -0.22 2.74 16 22 C -0.13 -2.03 6.03 -25.07 -0.15 -2.18 16 23 C -0.11 -1.47 6.91 -24.74 -0.17 -1.65 16 24 C -0.11 -1.54 6.34 -25.07 -0.16 -1.70 16 25 C -0.12 -2.03 5.77 -25.61 -0.15 -2.18 16 26 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 27 H 0.03 0.88 7.92 -51.93 -0.41 0.46 16 28 H 0.05 1.41 7.33 -51.93 -0.38 1.03 16 29 H 0.16 2.74 5.27 -52.48 -0.28 2.47 16 30 H 0.18 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.17 1.86 8.06 -52.49 -0.42 1.44 16 32 H 0.09 1.68 7.82 -51.93 -0.41 1.28 16 33 H 0.08 1.36 5.93 -51.93 -0.31 1.05 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 1.09 6.96 -51.93 -0.36 0.72 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.07 1.28 7.13 -51.93 -0.37 0.91 16 LS Contribution 332.59 15.07 5.01 5.01 Total: -1.00 -31.58 332.59 -8.63 -40.21 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -5.02 Total: 0.35 kcal Atomic # 6 Polarization: 9.19 SS G_CDS: -3.58 Total: 5.60 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: 0.12 Total: -59.09 kcal Atomic # 8 Polarization: -3.94 SS G_CDS: -0.21 Total: -4.14 kcal Atomic # 9 Polarization: -4.91 SS G_CDS: 0.07 Total: -4.84 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.58 -8.63 -40.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166533607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.381 kcal (2) G-P(sol) polarization free energy of solvation -31.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds