Wall clock time and date at job start Tue Mar 31 2020 10:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21282 * 120.00192 * 2 1 4 4 N 1.34777 * 119.99856 * 180.02562 * 2 1 3 5 5 C 1.46507 * 119.99995 * 179.97438 * 4 2 1 6 6 C 1.50703 * 109.46968 * 180.02562 * 5 4 2 7 7 C 1.38315 * 119.88014 * 89.99988 * 6 5 4 8 8 C 1.38014 * 120.12455 * 179.72503 * 7 6 5 9 9 C 1.39344 * 119.87602 * 0.27074 * 8 7 6 10 10 C 1.48383 * 120.12397 * 179.97438 * 9 8 7 11 11 C 1.38669 * 120.01385 * 130.00022 * 10 9 8 12 12 C 1.40554 * 119.65701 * 179.97438 * 11 10 9 13 13 C 1.41332 * 120.15657 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99937 * 154.72092 * 13 12 11 15 15 C 1.39898 * 120.00528 * 334.72194 * 13 12 11 16 16 N 1.30863 * 119.99329 * 342.83987 * 15 13 12 17 17 Si 1.86791 * 120.00580 * 162.84495 * 15 13 12 18 18 H 1.48497 * 109.47326 * 89.99679 * 17 15 13 19 19 H 1.48497 * 109.47678 * 209.99978 * 17 15 13 20 20 H 1.48504 * 109.46875 * 329.99869 * 17 15 13 21 21 C 1.40849 * 119.68597 * 0.02562 * 12 11 10 22 22 C 1.37556 * 120.02246 * 0.02562 * 21 12 11 23 23 C 1.38769 * 120.34861 * 359.70525 * 22 21 12 24 24 F 1.35101 * 119.84013 * 180.29656 * 23 22 21 25 25 C 1.39345 * 119.75503 * 0.02562 * 9 8 7 26 26 C 1.38012 * 119.87801 * 0.02562 * 25 9 8 27 27 H 1.09000 * 109.46611 * 239.99792 * 1 2 3 28 28 H 1.09001 * 109.46530 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47212 * 119.99773 * 1 2 3 30 30 H 0.97003 * 120.00155 * 359.97438 * 4 2 1 31 31 H 1.08998 * 109.47129 * 59.99823 * 5 4 2 32 32 H 1.09000 * 109.46795 * 299.99394 * 5 4 2 33 33 H 1.07998 * 119.94044 * 359.97438 * 7 6 5 34 34 H 1.07999 * 120.06639 * 180.25220 * 8 7 6 35 35 H 1.08002 * 120.17487 * 0.02562 * 11 10 9 36 36 H 0.96999 * 119.99766 * 179.97438 * 16 15 13 37 37 H 1.07998 * 119.98844 * 180.02562 * 21 12 11 38 38 H 1.08002 * 119.82718 * 179.97438 * 22 21 12 39 39 H 1.07999 * 120.06156 * 179.97438 * 25 9 8 40 40 H 1.08000 * 119.94047 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1673 -0.0011 6 6 4.1482 -2.5881 -0.0022 7 6 4.3774 -3.2370 -1.2020 8 6 4.8428 -4.5363 -1.2090 9 6 5.0764 -5.1964 -0.0042 10 6 5.5762 -6.5935 -0.0053 11 6 6.6746 -6.9378 0.7679 12 6 7.1414 -8.2636 0.7616 13 6 8.2604 -8.6260 1.5452 14 1 8.3816 -9.6478 1.8735 15 6 9.2110 -7.6613 1.8957 16 7 9.2628 -6.5272 1.2448 17 14 10.4063 -7.9921 3.2924 18 1 11.6284 -8.6421 2.7547 19 1 10.7739 -6.7092 3.9438 20 1 9.7670 -8.8880 4.2893 21 6 6.4893 -9.2289 -0.0300 22 6 5.4015 -8.8728 -0.7928 23 6 4.9362 -7.5655 -0.7833 24 9 3.8632 -7.2283 -1.5318 25 6 4.8379 -4.5399 1.2015 26 6 4.3715 -3.2410 1.1967 27 1 -0.3632 -0.5139 0.8900 28 1 -0.3632 1.0277 0.0005 29 1 -0.3633 -0.5138 -0.8900 30 1 1.6959 -2.0073 -0.0005 31 1 4.0096 -0.6536 0.8888 32 1 4.0089 -0.6533 -0.8912 33 1 4.1957 -2.7246 -2.1352 34 1 5.0253 -5.0407 -2.1464 35 1 7.1684 -6.1913 1.3723 36 1 9.9217 -5.8581 1.4880 37 1 6.8436 -10.2491 -0.0381 38 1 4.9041 -9.6155 -1.3990 39 1 5.0168 -5.0469 2.1382 40 1 4.1867 -2.7311 2.1306 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240153607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:09:03 Heat of formation + Delta-G solvation = -56.976463 kcal Electronic energy + Delta-G solvation = -24272.978447 eV Core-core repulsion = 20544.750694 eV Total energy + Delta-G solvation = -3728.227753 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.122 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -47.59285 -39.85890 -38.94007 -37.34513 -35.02214 -33.75014 -32.24903 -30.68805 -30.37193 -29.48822 -28.58465 -25.47630 -25.08258 -22.51839 -21.86623 -21.01429 -20.74054 -20.02541 -17.60394 -17.20250 -16.44920 -16.24091 -15.80073 -15.56914 -15.27949 -14.90721 -14.72293 -14.55357 -14.15793 -13.73893 -13.55915 -13.21771 -12.98255 -12.92331 -12.89481 -12.45039 -12.30791 -12.16733 -12.04398 -11.95728 -11.43017 -11.18651 -11.12188 -10.89665 -10.84461 -10.38441 -10.14200 -10.05456 -9.65157 -9.31237 -9.22099 -8.64013 -8.63287 -7.57699 -7.37962 -6.94266 -4.53187 1.35574 1.72697 2.49028 2.50466 2.67350 2.98280 2.98793 3.05033 3.23728 3.79990 4.11533 4.38521 4.62144 4.77770 5.01425 5.04072 5.12656 5.21135 5.33082 5.36950 5.48370 5.52918 5.65344 5.69464 5.80034 5.92898 5.99796 6.18822 6.26260 6.33788 6.53716 6.67800 6.76676 6.77523 6.82476 7.00026 7.06549 7.22976 7.30593 7.37753 7.53296 7.64405 7.80630 8.00374 8.06599 8.35447 8.65238 8.68537 9.99699 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.016551 B = 0.003126 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.299750 B = 8954.017913 C =10242.779644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.507 3.493 3 O -0.552 6.552 4 N -0.725 5.725 5 C 0.166 3.834 6 C -0.131 4.131 7 C -0.101 4.101 8 C -0.106 4.106 9 C 0.001 3.999 10 C -0.076 4.076 11 C -0.120 4.120 12 C 0.100 3.900 13 C -0.455 4.455 14 H 0.082 0.918 15 C 0.074 3.926 16 N -0.788 5.788 17 Si 0.910 3.090 18 H -0.268 1.268 19 H -0.274 1.274 20 H -0.259 1.259 21 C -0.200 4.200 22 C -0.118 4.118 23 C -0.031 4.031 24 F -0.168 7.168 25 C -0.110 4.110 26 C -0.101 4.101 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.403 0.597 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.131 0.869 36 H 0.284 0.716 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.125 0.875 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.278 6.613 -0.360 12.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.294 3.706 3 O -0.430 6.430 4 N -0.377 5.377 5 C 0.043 3.957 6 C -0.131 4.131 7 C -0.120 4.120 8 C -0.124 4.124 9 C 0.001 3.999 10 C -0.077 4.077 11 C -0.139 4.139 12 C 0.098 3.902 13 C -0.484 4.484 14 H 0.100 0.900 15 C -0.144 4.144 16 N -0.412 5.412 17 Si 0.734 3.266 18 H -0.193 1.193 19 H -0.199 1.199 20 H -0.183 1.183 21 C -0.220 4.220 22 C -0.137 4.137 23 C -0.051 4.051 24 F -0.148 7.148 25 C -0.128 4.128 26 C -0.120 4.120 27 H 0.106 0.894 28 H 0.109 0.891 29 H 0.106 0.894 30 H 0.238 0.762 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.136 0.864 34 H 0.140 0.860 35 H 0.148 0.852 36 H 0.095 0.905 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.143 0.857 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.726 7.626 -0.402 12.366 hybrid contribution 0.335 -0.596 0.360 0.773 sum -9.391 7.030 -0.041 11.731 Atomic orbital electron populations 1.21919 0.91768 1.05386 1.04321 1.20841 0.90622 0.83475 0.75636 1.90721 1.70947 1.31487 1.49884 1.46242 1.07399 1.08854 1.75247 1.20148 0.79422 0.93431 1.02722 1.19675 1.04458 0.95229 0.93767 1.20884 0.99398 0.94689 0.97007 1.21237 0.98981 0.94235 0.97951 1.18998 0.94785 0.93266 0.92835 1.18515 0.98207 0.90170 1.00814 1.21344 0.94570 0.97876 1.00107 1.17594 0.91769 0.91033 0.89854 1.19567 1.04405 0.96591 1.27834 0.89977 1.25951 0.98092 0.94291 0.96112 1.69803 1.30981 1.06515 1.33936 0.86276 0.80113 0.79064 0.81185 1.19344 1.19932 1.18323 1.20911 0.99736 0.99507 1.01820 1.20469 0.98344 0.93630 1.01260 1.17209 0.91209 0.93904 1.02793 1.91286 1.54446 1.93290 1.75744 1.21261 0.99231 0.94453 0.97892 1.20895 0.99445 0.94638 0.97021 0.89399 0.89077 0.89392 0.76204 0.90870 0.90899 0.86384 0.85968 0.85181 0.90467 0.87838 0.87888 0.85700 0.86325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.17 10.32 36.01 0.37 -0.80 16 2 C 0.51 5.64 7.94 -10.98 -0.09 5.55 16 3 O -0.55 -8.62 17.09 5.56 0.09 -8.52 16 4 N -0.73 -7.45 5.55 -61.47 -0.34 -7.79 16 5 C 0.17 1.97 5.79 -5.19 -0.03 1.94 16 6 C -0.13 -1.75 5.25 -104.56 -0.55 -2.30 16 7 C -0.10 -1.46 9.68 -39.64 -0.38 -1.84 16 8 C -0.11 -1.85 8.86 -39.25 -0.35 -2.20 16 9 C 0.00 0.03 5.30 -104.90 -0.56 -0.53 16 10 C -0.08 -1.70 5.47 -104.91 -0.57 -2.27 16 11 C -0.12 -2.88 8.13 -38.55 -0.31 -3.19 16 12 C 0.10 2.47 5.57 -106.86 -0.59 1.88 16 13 C -0.46 -11.15 9.04 -37.78 -0.34 -11.49 16 14 H 0.08 1.92 7.90 -52.48 -0.41 1.50 16 15 C 0.07 1.74 5.14 -17.34 -0.09 1.65 16 16 N -0.79 -19.09 10.97 55.54 0.61 -18.48 16 17 Si 0.91 17.46 29.59 -169.99 -5.03 12.43 16 18 H -0.27 -5.12 7.11 56.52 0.40 -4.71 16 19 H -0.27 -5.19 7.11 56.52 0.40 -4.78 16 20 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 21 C -0.20 -4.56 9.78 -38.84 -0.38 -4.94 16 22 C -0.12 -2.56 9.99 -39.63 -0.40 -2.95 16 23 C -0.03 -0.70 7.19 -38.73 -0.28 -0.98 16 24 F -0.17 -3.58 15.88 2.25 0.04 -3.55 16 25 C -0.11 -1.89 9.50 -39.25 -0.37 -2.26 16 26 C -0.10 -1.44 9.69 -39.63 -0.38 -1.83 16 27 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.09 0.61 8.12 -51.93 -0.42 0.19 16 29 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.40 3.41 8.46 -40.82 -0.35 3.07 16 31 H 0.07 0.90 8.09 -51.93 -0.42 0.48 16 32 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 33 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 34 H 0.12 2.16 7.80 -52.49 -0.41 1.75 16 35 H 0.13 3.22 6.16 -52.49 -0.32 2.90 16 36 H 0.28 6.30 8.30 -40.82 -0.34 5.97 16 37 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 38 H 0.10 1.96 8.06 -52.49 -0.42 1.54 16 39 H 0.13 2.10 8.04 -52.49 -0.42 1.68 16 40 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 LS Contribution 352.50 15.07 5.31 5.31 Total: -1.00 -28.38 352.50 -9.47 -37.85 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -4.85 Total: 9.31 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: -5.31 Total: -26.56 kcal Atomic # 7 Polarization: -26.54 SS G_CDS: 0.27 Total: -26.27 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.09 Total: -8.52 kcal Atomic # 9 Polarization: -3.58 SS G_CDS: 0.04 Total: -3.55 kcal Atomic # 14 Polarization: 17.46 SS G_CDS: -5.03 Total: 12.43 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.38 -9.47 -37.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240153607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.125 kcal (2) G-P(sol) polarization free energy of solvation -28.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds