Wall clock time and date at job start Tue Mar 31 2020 10:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86792 * 120.00257 * 2 1 4 4 H 1.48497 * 109.47138 * 270.00179 * 3 2 1 5 5 H 1.48507 * 109.46983 * 30.00342 * 3 2 1 6 6 H 1.48507 * 109.47143 * 150.00224 * 3 2 1 7 7 C 1.37887 * 119.99742 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99789 * 186.11320 * 7 2 1 9 9 C 1.50698 * 119.99607 * 6.38500 * 7 2 1 10 10 C 1.52994 * 115.55091 * 274.88498 * 9 7 2 11 11 O 1.45193 * 109.47629 * 294.88972 * 10 9 7 12 12 C 1.34232 * 117.00307 * 179.97438 * 11 10 9 13 13 O 1.20824 * 120.00151 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99981 * 180.02562 * 12 11 10 15 15 C 1.53000 * 109.46923 * 180.02562 * 14 12 11 16 16 C 1.50696 * 109.47158 * 179.97438 * 15 14 12 17 17 C 1.38833 * 119.73970 * 269.72383 * 16 15 14 18 18 C 1.37747 * 120.67086 * 179.75631 * 17 16 15 19 19 C 1.39131 * 119.77500 * 0.51493 * 18 17 16 20 20 N 1.37685 * 133.50712 * 179.76548 * 19 18 17 21 21 H 0.97002 * 125.06409 * 0.02562 * 20 19 18 22 22 C 1.36833 * 109.87292 * 179.97438 * 20 19 18 23 23 C 1.34232 * 109.93310 * 359.97438 * 22 20 19 24 24 C 1.40667 * 119.33281 * 359.74939 * 19 18 17 25 25 C 1.36630 * 119.73699 * 90.00306 * 16 15 14 26 26 C 1.53001 * 117.49598 * 129.22403 * 9 7 2 27 27 C 1.52997 * 117.50100 * 60.56368 * 9 7 2 28 28 H 0.97004 * 120.00151 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47303 * 54.89674 * 10 9 7 30 30 H 1.09010 * 109.47224 * 174.88947 * 10 9 7 31 31 H 1.09001 * 109.47119 * 300.00420 * 14 12 11 32 32 H 1.09000 * 109.46873 * 60.00569 * 14 12 11 33 33 H 1.08992 * 109.47224 * 300.00268 * 15 14 12 34 34 H 1.09006 * 109.47165 * 60.00025 * 15 14 12 35 35 H 1.07998 * 119.66526 * 0.02686 * 17 16 15 36 36 H 1.07995 * 120.11802 * 180.24192 * 18 17 16 37 37 H 1.08006 * 125.03410 * 180.02562 * 22 20 19 38 38 H 1.07993 * 126.50687 * 180.02562 * 23 22 20 39 39 H 1.08000 * 120.11132 * 359.97438 * 25 16 15 40 40 H 1.09003 * 117.50064 * 359.97438 * 26 9 7 41 41 H 1.08997 * 117.50444 * 145.01778 * 26 9 7 42 42 H 1.08997 * 117.50286 * 214.97535 * 27 9 7 43 43 H 1.09000 * 117.49777 * 359.97438 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0463 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0799 -1.1969 0.0991 9 6 1.2579 -2.4951 -0.1463 10 6 0.6970 -3.0828 1.1502 11 8 1.7928 -3.4499 2.0291 12 6 1.4685 -3.9840 3.2171 13 8 0.3074 -4.1399 3.5127 14 6 2.5527 -4.3890 4.1824 15 6 1.9180 -4.9655 5.4496 16 6 3.0021 -5.3711 6.4145 17 6 3.5169 -6.6597 6.3700 18 6 4.5115 -7.0494 7.2396 19 6 4.9994 -6.1476 8.1801 20 7 5.9594 -6.2303 9.1636 21 1 6.4898 -7.0184 9.3598 22 6 6.0547 -5.0347 9.8223 23 6 5.1831 -4.1556 9.3033 24 6 4.4707 -4.8449 8.2247 25 6 3.4665 -4.4695 7.3301 26 6 1.7501 -3.4765 -1.2119 27 6 0.4459 -2.7041 -1.4260 28 1 -0.4850 0.8401 0.0004 29 1 0.0685 -2.3412 1.6433 30 1 0.1031 -3.9677 0.9209 31 1 3.1883 -5.1437 3.7191 32 1 3.1533 -3.5170 4.4408 33 1 1.2822 -4.2112 5.9129 34 1 1.3175 -5.8376 5.1908 35 1 3.1367 -7.3623 5.6433 36 1 4.9083 -8.0528 7.1945 37 1 6.7315 -4.8286 10.6384 38 1 5.0349 -3.1341 9.6208 39 1 3.0584 -3.4701 7.3616 40 1 2.6136 -3.1810 -1.8078 41 1 1.6739 -4.5408 -0.9896 42 1 -0.4877 -3.2606 -1.3445 43 1 0.4514 -1.9005 -2.1624 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776094607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:24:34 Heat of formation + Delta-G solvation = -16.033297 kcal Electronic energy + Delta-G solvation = -24344.151482 eV Core-core repulsion = 20741.159463 eV Total energy + Delta-G solvation = -3602.992019 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.37496 -39.74090 -37.73209 -36.73502 -35.19442 -33.26771 -32.00707 -31.94129 -29.19842 -28.90039 -26.85919 -25.34871 -24.33429 -22.74971 -21.31666 -21.14366 -20.57528 -19.81778 -19.22243 -18.23410 -17.02552 -16.48192 -16.28728 -15.90554 -15.31736 -14.95312 -14.63593 -14.62311 -14.37400 -13.96751 -13.73981 -13.51946 -13.27615 -12.88505 -12.73989 -12.68403 -12.00539 -11.94976 -11.58098 -11.48041 -11.26895 -11.13372 -10.97721 -10.81287 -10.79345 -10.52395 -10.27088 -9.95937 -9.90129 -9.79170 -9.50632 -8.80397 -8.45572 -8.28354 -8.17965 -7.88033 -6.05150 -4.10259 0.98938 1.45647 2.52823 2.84982 2.90846 3.30193 3.37328 3.40348 3.41746 3.79442 4.40988 4.51851 4.63578 4.84137 4.93671 5.09812 5.13533 5.21156 5.24366 5.28221 5.35098 5.45385 5.53939 5.70344 5.76764 5.79236 5.89224 6.01589 6.03084 6.19960 6.26843 6.28228 6.36396 6.51933 6.56603 6.58975 6.66711 6.69326 6.75761 7.00704 7.04696 7.28727 7.32368 7.38946 7.50867 7.88380 8.39044 8.52126 8.91538 9.55488 11.04357 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.017355 B = 0.002558 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.978678 B =10942.676329 C =11875.641429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.068 3.932 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.489 4.489 8 H 0.063 0.937 9 C 0.038 3.962 10 C 0.116 3.884 11 O -0.339 6.339 12 C 0.452 3.548 13 O -0.526 6.526 14 C -0.109 4.109 15 C -0.064 4.064 16 C -0.104 4.104 17 C -0.089 4.089 18 C -0.131 4.131 19 C 0.090 3.910 20 N -0.599 5.599 21 H 0.413 0.587 22 C 0.045 3.955 23 C -0.203 4.203 24 C -0.109 4.109 25 C -0.065 4.065 26 C -0.205 4.205 27 C -0.147 4.147 28 H 0.261 0.739 29 H 0.076 0.924 30 H 0.038 0.962 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.127 0.873 36 H 0.119 0.881 37 H 0.168 0.832 38 H 0.146 0.854 39 H 0.124 0.876 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.501 -13.050 17.486 24.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.135 4.135 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.527 4.527 8 H 0.082 0.918 9 C 0.037 3.963 10 C 0.042 3.958 11 O -0.254 6.254 12 C 0.296 3.704 13 O -0.417 6.417 14 C -0.146 4.146 15 C -0.101 4.101 16 C -0.105 4.105 17 C -0.108 4.108 18 C -0.152 4.152 19 C -0.017 4.017 20 N -0.203 5.203 21 H 0.250 0.750 22 C -0.081 4.081 23 C -0.228 4.228 24 C -0.113 4.113 25 C -0.083 4.083 26 C -0.242 4.242 27 C -0.184 4.184 28 H 0.071 0.929 29 H 0.094 0.906 30 H 0.056 0.944 31 H 0.119 0.881 32 H 0.122 0.878 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.145 0.855 36 H 0.137 0.863 37 H 0.186 0.814 38 H 0.164 0.836 39 H 0.142 0.858 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.064 -13.019 17.575 24.076 hybrid contribution 0.537 0.598 0.109 0.811 sum 10.600 -12.422 17.684 24.070 Atomic orbital electron populations 1.70001 1.05914 1.26691 1.49236 1.25021 0.94860 0.99091 0.94526 0.86583 0.80009 0.83248 0.78147 1.20600 1.21240 1.19695 1.20401 0.93103 0.88359 1.50853 0.91848 1.18779 0.98792 0.94177 0.84532 1.22869 0.85922 0.96926 0.90045 1.86521 1.41522 1.70984 1.26349 1.23611 0.89895 0.74473 0.82455 1.90607 1.21708 1.52324 1.77015 1.21336 0.96525 1.03478 0.93305 1.20337 0.95176 1.02153 0.92459 1.19329 0.99208 0.93951 0.98035 1.20763 0.95916 0.95886 0.98282 1.19983 1.00064 0.98373 0.96777 1.18286 0.93606 0.96316 0.93458 1.41781 1.34728 1.13376 1.30374 0.75031 1.21792 1.01873 0.85122 0.99328 1.21743 1.01028 1.00056 0.99977 1.19209 0.99568 0.93430 0.99099 1.20225 0.95090 0.99332 0.93678 1.23002 0.98370 0.95709 1.07165 1.22546 0.92481 1.01276 1.02109 0.92915 0.90614 0.94410 0.88068 0.87797 0.90084 0.90196 0.85532 0.86348 0.81442 0.83638 0.85774 0.90092 0.91550 0.91649 0.89461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.09 12.93 55.43 0.72 -24.38 16 2 C 0.07 1.88 5.39 -17.82 -0.10 1.78 16 3 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 7 C -0.49 -13.48 8.77 -34.44 -0.30 -13.78 16 8 H 0.06 1.75 7.82 -52.49 -0.41 1.34 16 9 C 0.04 0.95 1.61 -155.67 -0.25 0.70 16 10 C 0.12 2.79 5.28 37.15 0.20 2.99 16 11 O -0.34 -7.52 10.16 -39.26 -0.40 -7.92 16 12 C 0.45 8.63 7.96 36.01 0.29 8.91 16 13 O -0.53 -11.22 15.73 -18.75 -0.29 -11.51 16 14 C -0.11 -1.50 5.79 -27.88 -0.16 -1.66 16 15 C -0.06 -0.79 4.62 -27.89 -0.13 -0.92 16 16 C -0.10 -1.20 5.10 -104.99 -0.54 -1.73 16 17 C -0.09 -0.92 9.66 -39.54 -0.38 -1.30 16 18 C -0.13 -1.28 10.08 -39.43 -0.40 -1.67 16 19 C 0.09 0.94 7.28 -83.99 -0.61 0.33 16 20 N -0.60 -4.57 6.07 -10.65 -0.06 -4.64 16 21 H 0.41 1.85 8.96 -40.82 -0.37 1.48 16 22 C 0.04 0.33 11.81 -16.73 -0.20 0.13 16 23 C -0.20 -1.93 11.08 -37.67 -0.42 -2.35 16 24 C -0.11 -1.25 6.37 -105.14 -0.67 -1.92 16 25 C -0.06 -0.76 9.67 -39.64 -0.38 -1.14 16 26 C -0.21 -4.51 9.96 -26.69 -0.27 -4.78 16 27 C -0.15 -3.44 9.43 -26.69 -0.25 -3.69 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.08 2.02 8.13 -51.93 -0.42 1.60 16 30 H 0.04 0.86 8.09 -51.92 -0.42 0.44 16 31 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.08 1.06 8.03 -51.93 -0.42 0.64 16 34 H 0.08 0.99 8.04 -51.93 -0.42 0.57 16 35 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.17 0.61 8.06 -52.48 -0.42 0.19 16 38 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 40 H 0.08 1.74 8.14 -51.93 -0.42 1.31 16 41 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 43 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 LS Contribution 372.13 15.07 5.61 5.61 Total: -1.00 -32.60 372.13 -10.26 -42.87 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -6.24 Total: 3.91 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: -4.57 Total: -20.12 kcal Atomic # 7 Polarization: -29.67 SS G_CDS: 0.65 Total: -29.01 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.69 Total: -19.43 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.60 -10.26 -42.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776094607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.832 kcal (2) G-P(sol) polarization free energy of solvation -32.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds