Wall clock time and date at job start Tue Mar 31 2020 10:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47057 * 2 1 4 4 H 1.09003 * 109.47416 * 178.44295 * 3 2 1 5 5 C 1.50703 * 109.47193 * 298.44465 * 3 2 1 6 6 H 1.07993 * 120.00424 * 120.00013 * 5 3 2 7 7 C 1.37875 * 119.99772 * 299.99803 * 5 3 2 8 8 N 1.31520 * 120.00224 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 120.00172 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.46933 * 89.99819 * 9 7 5 11 11 H 1.48499 * 109.47215 * 210.00021 * 9 7 5 12 12 H 1.48502 * 109.46862 * 329.99704 * 9 7 5 13 13 N 1.46894 * 109.47202 * 58.44188 * 3 2 1 14 14 C 1.47156 * 111.00393 * 179.52141 * 13 3 2 15 15 C 1.52906 * 108.50101 * 165.29636 * 14 13 3 16 16 C 1.50717 * 109.95454 * 50.42119 * 15 14 13 17 17 C 1.37882 * 121.65385 * 343.05028 * 16 15 14 18 18 C 1.38684 * 119.72437 * 180.47156 * 17 16 15 19 19 C 1.38064 * 120.37660 * 359.85898 * 18 17 16 20 20 C 1.38219 * 119.87096 * 359.96726 * 19 18 17 21 21 C 1.38083 * 119.82674 * 0.08922 * 20 19 18 22 22 C 1.50694 * 119.82674 * 180.02562 * 21 20 19 23 23 F 1.39905 * 109.46869 * 359.97438 * 22 21 20 24 24 F 1.39902 * 109.47115 * 119.99600 * 22 21 20 25 25 F 1.39901 * 109.47396 * 239.99706 * 22 21 20 26 26 C 1.46635 * 111.00010 * 56.52128 * 13 3 2 27 27 H 1.08997 * 109.46879 * 295.49608 * 1 2 3 28 28 H 1.08999 * 109.46923 * 175.50003 * 1 2 3 29 29 H 1.08994 * 109.47317 * 55.49722 * 1 2 3 30 30 H 1.08998 * 109.47924 * 120.00033 * 2 1 3 31 31 H 1.08999 * 109.47438 * 240.00678 * 2 1 3 32 32 H 0.97001 * 120.00014 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.63186 * 285.01363 * 14 13 3 34 34 H 1.08999 * 109.63034 * 45.60368 * 14 13 3 35 35 H 1.09003 * 109.38646 * 290.27751 * 15 14 13 36 36 H 1.09002 * 109.31658 * 170.52435 * 15 14 13 37 37 H 1.07997 * 119.81170 * 179.87669 * 18 17 16 38 38 H 1.08003 * 120.06127 * 179.97438 * 19 18 17 39 39 H 1.07998 * 120.08613 * 180.02562 * 20 19 18 40 40 H 1.09001 * 109.27072 * 296.21842 * 26 13 3 41 41 H 1.08996 * 109.27274 * 55.69452 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1296 1.4427 0.0279 5 6 1.5694 2.1418 -1.2493 6 1 0.9463 3.0206 -1.1742 7 6 1.9344 1.6594 -2.4883 8 7 2.6937 0.5895 -2.5799 9 14 1.3517 2.5265 -4.0370 10 1 2.3404 3.5642 -4.4250 11 1 1.2148 1.5375 -5.1362 12 1 0.0366 3.1669 -3.7806 13 7 1.5198 2.1458 1.1801 14 6 1.9999 3.5363 1.2196 15 6 1.1564 4.3123 2.2317 16 6 1.0998 3.5615 3.5373 17 6 1.4363 2.2269 3.6198 18 6 1.3604 1.5728 4.8403 19 6 0.9531 2.2510 5.9718 20 6 0.6194 3.5897 5.8892 21 6 0.6933 4.2423 4.6745 22 6 0.3300 5.7020 4.5846 23 9 -0.0466 6.1676 5.8490 24 9 1.4343 6.4301 4.1289 25 9 -0.7354 5.8634 3.6923 26 6 1.8895 1.4457 2.4144 27 1 -0.3633 0.4424 0.9276 28 1 -0.3633 -1.0245 -0.0806 29 1 -0.3633 0.5821 -0.8468 30 1 1.8934 -0.5138 0.8899 31 1 1.8934 -0.5137 -0.8900 32 1 2.9508 0.2504 -3.4516 33 1 3.0463 3.5539 1.5247 34 1 1.8954 3.9879 0.2332 35 1 0.1461 4.4361 1.8414 36 1 1.6031 5.2927 2.3970 37 1 1.6217 0.5269 4.9061 38 1 0.8954 1.7364 6.9196 39 1 0.3007 4.1237 6.7722 40 1 1.4190 0.4626 2.4251 41 1 2.9723 1.3261 2.4496 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255175607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:03:40 Heat of formation + Delta-G solvation = -124.633326 kcal Electronic energy + Delta-G solvation = -27171.318267 eV Core-core repulsion = 23021.760257 eV Total energy + Delta-G solvation = -4149.558010 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.135 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.17080 -47.70401 -47.56673 -40.07357 -37.31965 -34.11151 -33.00716 -31.58499 -30.50554 -29.27291 -26.78568 -25.84005 -24.19669 -23.66733 -22.48493 -21.63158 -19.80870 -18.85583 -18.44443 -18.31274 -17.92624 -16.25670 -16.00444 -15.51629 -14.98970 -14.84464 -14.46206 -14.38403 -14.26100 -14.14544 -13.84383 -13.75280 -13.63684 -13.51405 -13.19712 -12.90137 -12.56828 -12.43911 -12.38441 -11.82057 -11.66329 -11.55587 -11.27513 -10.96593 -10.89649 -10.65619 -10.52314 -10.13352 -10.03095 -9.73112 -9.43296 -9.08580 -8.84049 -8.54757 -8.43959 -7.27924 -6.04551 -4.08235 0.96222 1.31399 2.70110 3.28593 3.36090 3.39801 3.49280 3.75784 4.06169 4.36895 4.46677 4.72671 4.78251 4.82991 4.99656 5.21858 5.29800 5.35457 5.55394 5.61520 5.80251 5.84062 5.97433 6.03217 6.11694 6.18526 6.31330 6.43230 6.49189 6.54446 6.61558 6.66408 6.74844 6.82492 7.06676 7.23329 7.34901 7.60085 7.69057 7.79433 8.07746 8.27955 8.51232 8.96554 9.56013 11.01849 Molecular weight = 313.13amu Principal moments of inertia in cm(-1) A = 0.018472 B = 0.004314 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.484624 B = 6488.801156 C = 7509.044938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.113 4.113 3 C 0.216 3.784 4 H 0.000 1.000 5 C -0.498 4.498 6 H 0.063 0.937 7 C 0.062 3.938 8 N -0.892 5.892 9 Si 0.893 3.107 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.523 5.523 14 C 0.060 3.940 15 C -0.101 4.101 16 C -0.008 4.008 17 C -0.067 4.067 18 C -0.087 4.087 19 C -0.131 4.131 20 C -0.082 4.082 21 C -0.193 4.193 22 C 0.511 3.489 23 F -0.182 7.182 24 F -0.176 7.176 25 F -0.174 7.174 26 C 0.087 3.913 27 H 0.039 0.961 28 H 0.016 0.984 29 H 0.060 0.940 30 H 0.013 0.987 31 H 0.094 0.906 32 H 0.260 0.740 33 H 0.024 0.976 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.090 0.910 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.699 4.674 15.905 16.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.151 4.151 3 C 0.111 3.889 4 H 0.017 0.983 5 C -0.536 4.536 6 H 0.081 0.919 7 C -0.140 4.140 8 N -0.531 5.531 9 Si 0.721 3.279 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.198 1.198 13 N -0.247 5.247 14 C -0.068 4.068 15 C -0.138 4.138 16 C -0.009 4.009 17 C -0.067 4.067 18 C -0.106 4.106 19 C -0.149 4.149 20 C -0.100 4.100 21 C -0.194 4.194 22 C 0.456 3.544 23 F -0.164 7.164 24 F -0.158 7.158 25 F -0.156 7.156 26 C -0.041 4.041 27 H 0.058 0.942 28 H 0.035 0.965 29 H 0.079 0.921 30 H 0.031 0.969 31 H 0.112 0.888 32 H 0.070 0.930 33 H 0.043 0.957 34 H 0.116 0.884 35 H 0.111 0.889 36 H 0.097 0.903 37 H 0.147 0.853 38 H 0.148 0.852 39 H 0.150 0.850 40 H 0.108 0.892 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.140 4.597 15.695 16.653 hybrid contribution 0.522 0.589 -0.710 1.060 sum -2.619 5.186 14.985 16.072 Atomic orbital electron populations 1.21479 0.97182 0.97699 1.01568 1.21591 0.95243 0.98067 1.00220 1.19320 0.92646 0.90866 0.86088 0.98285 1.21021 1.31134 1.11979 0.89479 0.91851 1.24886 0.95137 0.95034 0.98932 1.69870 1.36390 1.22600 1.24231 0.86572 0.79211 0.79278 0.82838 1.20821 1.21311 1.19805 1.62452 1.59397 1.01271 1.01606 1.22015 0.94604 0.90574 0.99611 1.21016 1.02950 0.98054 0.91743 1.19466 0.93800 0.93632 0.93979 1.19883 0.98391 0.92872 0.95563 1.21322 0.97062 1.00227 0.91945 1.20967 1.01181 0.93907 0.98800 1.20845 0.97985 0.95154 0.96018 1.19911 1.11084 0.91689 0.96703 1.18311 0.74681 0.88047 0.73314 1.93134 1.91629 1.90415 1.41186 1.93170 1.53708 1.80038 1.88851 1.93221 1.57359 1.96357 1.68632 1.21028 0.97775 0.97350 0.87981 0.94163 0.96507 0.92073 0.96858 0.88809 0.92967 0.95737 0.88375 0.88933 0.90265 0.85280 0.85218 0.84982 0.89172 0.94160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.59 9.47 37.16 0.35 -2.23 16 2 C -0.11 -2.56 4.98 -26.73 -0.13 -2.69 16 3 C 0.22 5.09 1.73 -68.86 -0.12 4.97 16 4 H 0.00 -0.01 8.14 -51.93 -0.42 -0.43 16 5 C -0.50 -12.75 6.47 -34.44 -0.22 -12.97 16 6 H 0.06 1.64 6.84 -52.49 -0.36 1.28 16 7 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 8 N -0.89 -24.35 11.31 55.43 0.63 -23.73 16 9 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 13 N -0.52 -10.52 3.79 -229.59 -0.87 -11.40 16 14 C 0.06 1.13 5.39 -3.73 -0.02 1.11 16 15 C -0.10 -1.63 4.72 -27.92 -0.13 -1.76 16 16 C -0.01 -0.13 5.75 -104.60 -0.60 -0.73 16 17 C -0.07 -1.02 5.79 -104.63 -0.61 -1.62 16 18 C -0.09 -1.08 9.65 -39.48 -0.38 -1.46 16 19 C -0.13 -1.41 10.05 -39.65 -0.40 -1.81 16 20 C -0.08 -0.96 9.43 -39.65 -0.37 -1.33 16 21 C -0.19 -2.66 5.38 -104.54 -0.56 -3.22 16 22 C 0.51 6.85 2.85 36.00 0.10 6.95 16 23 F -0.18 -2.25 15.96 2.25 0.04 -2.22 16 24 F -0.18 -2.43 15.27 2.25 0.03 -2.40 16 25 F -0.17 -2.49 16.11 2.25 0.04 -2.45 16 26 C 0.09 1.50 4.56 -5.16 -0.02 1.47 16 27 H 0.04 0.81 7.37 -51.93 -0.38 0.43 16 28 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 1.42 7.12 -51.93 -0.37 1.05 16 30 H 0.01 0.27 6.53 -51.93 -0.34 -0.07 16 31 H 0.09 2.40 6.03 -51.93 -0.31 2.09 16 32 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 33 H 0.02 0.46 8.05 -51.93 -0.42 0.04 16 34 H 0.10 1.98 6.19 -51.93 -0.32 1.66 16 35 H 0.09 1.55 7.76 -51.93 -0.40 1.15 16 36 H 0.08 1.19 5.89 -51.93 -0.31 0.88 16 37 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 38 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 39 H 0.13 1.27 7.14 -52.49 -0.37 0.89 16 40 H 0.09 1.53 6.17 -51.93 -0.32 1.21 16 41 H 0.04 0.71 8.13 -51.93 -0.42 0.28 16 LS Contribution 328.75 15.07 4.95 4.95 Total: -1.00 -26.76 328.75 -8.57 -35.33 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -5.16 Total: 0.05 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -3.21 Total: -13.81 kcal Atomic # 7 Polarization: -34.88 SS G_CDS: -0.24 Total: -35.12 kcal Atomic # 9 Polarization: -7.17 SS G_CDS: 0.11 Total: -7.07 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -26.76 -8.57 -35.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255175607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.303 kcal (2) G-P(sol) polarization free energy of solvation -26.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds