Wall clock time and date at job start Tue Mar 31 2020 11:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.33667 * 125.81284 * 2 1 4 4 C 1.34222 * 110.91039 * 180.13037 * 3 2 1 5 5 C 1.50703 * 125.42241 * 179.85046 * 4 3 2 6 6 C 1.53007 * 109.47219 * 59.69826 * 5 4 3 7 7 C 1.52999 * 109.47446 * 299.69451 * 5 4 3 8 8 C 1.34161 * 109.15292 * 359.58986 * 4 3 2 9 9 C 1.36528 * 125.80809 * 179.67469 * 2 1 3 10 10 C 1.47249 * 127.20317 * 0.03782 * 9 2 1 11 11 O 1.21637 * 119.99516 * 352.36333 * 10 9 2 12 12 N 1.34776 * 120.00185 * 172.36540 * 10 9 2 13 13 C 1.36999 * 119.99686 * 3.61568 * 12 10 9 14 14 H 1.07999 * 120.00233 * 307.24158 * 13 12 10 15 15 C 1.38921 * 120.00013 * 127.23889 * 13 12 10 16 16 N 1.31425 * 119.99881 * 4.74647 * 15 13 12 17 17 Si 1.86801 * 120.00105 * 184.74315 * 15 13 12 18 18 H 1.48494 * 109.47014 * 90.00011 * 17 15 13 19 19 H 1.48500 * 109.47176 * 210.00021 * 17 15 13 20 20 H 1.48502 * 109.47002 * 330.00146 * 17 15 13 21 21 C 1.39701 * 120.00056 * 183.61483 * 12 10 9 22 22 C 1.38982 * 120.08249 * 294.34200 * 21 12 10 23 23 C 1.38075 * 119.92154 * 179.81322 * 22 21 12 24 24 C 1.38312 * 120.07852 * 0.44096 * 23 22 21 25 25 C 1.38310 * 120.16128 * 359.79114 * 24 23 22 26 26 C 1.38079 * 120.08030 * 0.02562 * 25 24 23 27 27 H 1.09000 * 109.47111 * 270.32857 * 1 2 3 28 28 H 1.09008 * 109.46915 * 30.32182 * 1 2 3 29 29 H 1.08997 * 109.47509 * 150.32248 * 1 2 3 30 30 H 1.09001 * 109.47026 * 179.69390 * 5 4 3 31 31 H 1.09001 * 109.46512 * 300.00213 * 6 5 4 32 32 H 1.08998 * 109.46894 * 180.02562 * 6 5 4 33 33 H 1.09000 * 109.47036 * 59.99453 * 6 5 4 34 34 H 1.08996 * 109.47087 * 300.00585 * 7 5 4 35 35 H 1.09000 * 109.46610 * 60.00246 * 7 5 4 36 36 H 1.08996 * 109.47403 * 179.97438 * 7 5 4 37 37 H 1.07999 * 127.02133 * 180.24169 * 8 4 3 38 38 H 0.96999 * 119.99957 * 185.00160 * 16 15 13 39 39 H 1.08001 * 120.03521 * 0.02562 * 22 21 12 40 40 H 1.08002 * 119.96043 * 180.20701 * 23 22 21 41 41 H 1.08000 * 119.92003 * 179.76168 * 24 23 22 42 42 H 1.08004 * 119.96293 * 179.97438 * 25 24 23 43 43 H 1.07993 * 120.03918 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2892 1.0839 0.0000 4 6 3.5862 0.7388 -0.0029 5 6 4.7461 1.7009 -0.0069 6 6 4.6772 2.5882 1.2377 7 6 4.6794 2.5750 -1.2608 8 6 3.6857 -0.5991 0.0043 9 6 2.3058 -1.1072 0.0063 10 6 1.8756 -2.5154 0.0135 11 8 0.6993 -2.7912 0.1543 12 7 2.7851 -3.4987 -0.1359 13 6 4.1177 -3.1921 -0.2201 14 1 4.4599 -2.4643 -0.9409 15 6 5.0288 -3.8174 0.6218 16 7 4.6271 -4.7696 1.4337 17 14 6.8251 -3.3050 0.5996 18 1 7.0409 -2.2147 1.5842 19 1 7.6762 -4.4688 0.9552 20 1 7.1859 -2.8243 -0.7584 21 6 2.3690 -4.8306 -0.2048 22 6 1.7781 -5.4338 0.8991 23 6 1.3645 -6.7492 0.8260 24 6 1.5460 -7.4691 -0.3409 25 6 2.1380 -6.8735 -1.4399 26 6 2.5506 -5.5574 -1.3754 27 1 -0.3633 0.0059 1.0276 28 1 -0.3633 0.8872 -0.5189 29 1 -0.3634 -0.8928 -0.5088 30 1 5.6819 1.1419 -0.0031 31 1 3.7414 3.1471 1.2339 32 1 5.5159 3.2844 1.2345 33 1 4.7247 1.9654 2.1310 34 1 4.7285 1.9429 -2.1474 35 1 3.7436 3.1340 -1.2645 36 1 5.5180 3.2712 -1.2635 37 1 4.5938 -1.1837 0.0078 38 1 5.2467 -5.1559 2.0723 39 1 1.6395 -4.8733 1.8118 40 1 0.9023 -7.2176 1.6824 41 1 1.2251 -8.4989 -0.3940 42 1 2.2785 -7.4388 -2.3494 43 1 3.0132 -5.0931 -2.2338 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341650737.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:41 Heat of formation + Delta-G solvation = 7.229412 kcal Electronic energy + Delta-G solvation = -26433.189005 eV Core-core repulsion = 22831.205733 eV Total energy + Delta-G solvation = -3601.983272 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.146 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.93161 -39.21351 -37.20549 -35.46038 -34.77139 -32.28887 -31.76314 -30.79003 -29.91218 -28.75902 -27.10784 -26.26762 -25.08782 -22.96759 -21.62605 -21.44809 -21.19773 -19.93429 -18.72187 -17.00097 -16.35534 -15.81362 -15.57805 -15.43332 -15.03899 -14.56312 -14.47354 -14.11702 -13.89655 -13.35831 -13.18919 -12.96577 -12.70443 -12.54202 -12.45427 -12.36247 -12.31416 -12.12462 -11.68065 -11.63024 -11.52235 -11.33054 -11.14320 -11.00650 -10.87997 -10.61316 -10.60387 -10.36596 -10.18066 -9.12130 -8.91006 -8.71922 -8.06358 -7.90664 -7.74729 -7.25279 -6.38000 -4.30630 2.07184 2.41301 2.47095 2.84317 3.07006 3.12841 3.14937 3.31545 3.97947 4.39946 4.62121 4.79220 4.81475 5.00175 5.03976 5.20793 5.38082 5.54863 5.64347 5.75973 5.76609 5.85169 5.86556 5.87582 5.93615 5.95573 5.97370 6.03049 6.26619 6.28346 6.29698 6.40717 6.42625 6.55454 6.59977 6.76773 6.83620 7.00960 7.20599 7.31603 7.32272 7.43682 7.68192 7.76322 7.80208 8.11935 8.39439 8.94836 9.32148 9.80528 10.60071 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.013738 B = 0.005472 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.585072 B = 5116.094478 C = 6561.401927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.034 3.966 3 O -0.180 6.180 4 C -0.048 4.048 5 C -0.008 4.008 6 C -0.147 4.147 7 C -0.146 4.146 8 C -0.150 4.150 9 C -0.193 4.193 10 C 0.558 3.442 11 O -0.587 6.587 12 N -0.404 5.404 13 C -0.353 4.353 14 H 0.096 0.904 15 C 0.057 3.943 16 N -0.846 5.846 17 Si 0.903 3.097 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.265 1.265 21 C 0.214 3.786 22 C -0.072 4.072 23 C -0.123 4.123 24 C -0.152 4.152 25 C -0.124 4.124 26 C -0.131 4.131 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.178 0.822 38 H 0.272 0.728 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.049 7.795 -2.429 8.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.018 4.018 3 O -0.078 6.078 4 C -0.095 4.095 5 C -0.027 4.027 6 C -0.204 4.204 7 C -0.204 4.204 8 C -0.169 4.169 9 C -0.197 4.197 10 C 0.350 3.650 11 O -0.472 6.472 12 N -0.119 5.119 13 C -0.480 4.480 14 H 0.113 0.887 15 C -0.152 4.152 16 N -0.479 5.479 17 Si 0.728 3.272 18 H -0.196 1.196 19 H -0.205 1.205 20 H -0.189 1.189 21 C 0.123 3.877 22 C -0.091 4.091 23 C -0.142 4.142 24 C -0.170 4.170 25 C -0.143 4.143 26 C -0.151 4.151 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.121 0.879 30 H 0.115 0.885 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.195 0.805 38 H 0.082 0.918 39 H 0.127 0.873 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.126 0.874 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.505 7.765 -2.248 8.099 hybrid contribution 1.371 -0.158 0.249 1.402 sum 0.866 7.606 -1.999 7.912 Atomic orbital electron populations 1.20383 0.84587 1.03873 1.03501 1.22590 0.93494 0.83411 1.02324 1.83532 1.16618 1.35027 1.72669 1.22144 0.82256 0.94804 1.10343 1.19652 0.92763 0.94065 0.96177 1.21858 1.01946 0.99347 0.97275 1.21853 1.01960 0.99420 0.97126 1.23690 0.98857 0.91936 1.02433 1.21076 0.93038 0.93695 1.11880 1.17542 0.85039 0.84254 0.78197 1.90633 1.17842 1.84272 1.54469 1.40712 1.06263 1.01598 1.63293 1.19473 0.80778 1.26849 1.20860 0.88657 1.25619 1.00032 0.94588 0.94977 1.69881 1.36619 1.22018 1.19418 0.86298 0.82768 0.78826 0.79264 1.19628 1.20520 1.18882 1.17613 0.92446 0.85742 0.91870 1.20885 0.97240 0.93935 0.97059 1.20782 1.01506 0.94537 0.97378 1.20776 1.03086 0.98954 0.94183 1.20703 1.00768 0.94781 0.98040 1.21010 1.02075 0.94680 0.97308 0.90312 0.91621 0.87878 0.88515 0.92348 0.92220 0.92183 0.92212 0.92362 0.92228 0.80465 0.91771 0.87280 0.87462 0.87649 0.87418 0.87048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.08 9.82 36.01 0.35 -0.73 16 2 C 0.03 0.66 7.38 -34.92 -0.26 0.41 16 3 O -0.18 -3.27 10.52 7.60 0.08 -3.19 16 4 C -0.05 -0.83 5.79 -35.74 -0.21 -1.04 16 5 C -0.01 -0.11 3.32 -91.77 -0.30 -0.41 16 6 C -0.15 -1.74 9.18 37.16 0.34 -1.40 16 7 C -0.15 -1.67 9.18 37.16 0.34 -1.33 16 8 C -0.15 -3.07 9.05 -37.45 -0.34 -3.41 16 9 C -0.19 -4.30 6.16 -103.28 -0.64 -4.93 16 10 C 0.56 14.03 7.49 -12.60 -0.09 13.94 16 11 O -0.59 -15.35 14.48 5.24 0.08 -15.27 16 12 N -0.40 -10.31 2.55 -60.16 -0.15 -10.47 16 13 C -0.35 -8.76 6.31 -14.99 -0.09 -8.86 16 14 H 0.10 2.27 5.70 -52.49 -0.30 1.97 16 15 C 0.06 1.41 5.42 -17.47 -0.09 1.32 16 16 N -0.85 -22.24 11.61 55.49 0.64 -21.60 16 17 Si 0.90 18.74 29.02 -169.99 -4.93 13.81 16 18 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 19 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 20 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 21 C 0.21 5.36 3.54 -83.72 -0.30 5.06 16 22 C -0.07 -1.73 8.42 -39.37 -0.33 -2.06 16 23 C -0.12 -2.56 10.04 -39.61 -0.40 -2.96 16 24 C -0.15 -2.91 10.04 -39.53 -0.40 -3.31 16 25 C -0.12 -2.46 10.04 -39.61 -0.40 -2.86 16 26 C -0.13 -2.98 9.77 -39.36 -0.38 -3.36 16 27 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 29 H 0.10 1.82 6.67 -51.93 -0.35 1.48 16 30 H 0.10 1.23 8.09 -51.93 -0.42 0.81 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.18 3.70 4.57 -52.49 -0.24 3.46 16 38 H 0.27 6.83 8.32 -40.82 -0.34 6.49 16 39 H 0.11 2.79 8.06 -52.49 -0.42 2.36 16 40 H 0.11 1.92 8.06 -52.49 -0.42 1.50 16 41 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 42 H 0.11 1.78 8.06 -52.48 -0.42 1.35 16 43 H 0.11 2.44 8.06 -52.49 -0.42 2.02 16 LS Contribution 359.22 15.07 5.41 5.41 Total: -1.00 -29.44 359.22 -8.01 -37.45 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -5.94 Total: 9.79 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: -3.20 Total: -15.94 kcal Atomic # 7 Polarization: -32.56 SS G_CDS: 0.49 Total: -32.07 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: 0.16 Total: -18.46 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -4.93 Total: 13.81 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.44 -8.01 -37.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341650737.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.679 kcal (2) G-P(sol) polarization free energy of solvation -29.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds