Wall clock time and date at job start Tue Mar 31 2020 11:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.33667 * 125.81284 * 2 1 4 4 C 1.34222 * 110.91039 * 180.13037 * 3 2 1 5 5 C 1.50703 * 125.42241 * 179.85046 * 4 3 2 6 6 C 1.53007 * 109.47219 * 59.69826 * 5 4 3 7 7 C 1.52999 * 109.47446 * 299.69451 * 5 4 3 8 8 C 1.34161 * 109.15292 * 359.58986 * 4 3 2 9 9 C 1.36528 * 125.80809 * 179.67469 * 2 1 3 10 10 C 1.47249 * 127.20317 * 0.03782 * 9 2 1 11 11 O 1.21637 * 119.99516 * 352.36333 * 10 9 2 12 12 N 1.34776 * 120.00185 * 172.36540 * 10 9 2 13 13 C 1.36999 * 119.99686 * 3.61568 * 12 10 9 14 14 H 1.07999 * 120.00233 * 307.24158 * 13 12 10 15 15 C 1.38921 * 120.00013 * 127.23889 * 13 12 10 16 16 N 1.31425 * 119.99881 * 4.74647 * 15 13 12 17 17 Si 1.86801 * 120.00105 * 184.74315 * 15 13 12 18 18 H 1.48494 * 109.47014 * 90.00011 * 17 15 13 19 19 H 1.48500 * 109.47176 * 210.00021 * 17 15 13 20 20 H 1.48502 * 109.47002 * 330.00146 * 17 15 13 21 21 C 1.39701 * 120.00056 * 183.61483 * 12 10 9 22 22 C 1.38982 * 120.08249 * 294.34200 * 21 12 10 23 23 C 1.38075 * 119.92154 * 179.81322 * 22 21 12 24 24 C 1.38312 * 120.07852 * 0.44096 * 23 22 21 25 25 C 1.38310 * 120.16128 * 359.79114 * 24 23 22 26 26 C 1.38079 * 120.08030 * 0.02562 * 25 24 23 27 27 H 1.09000 * 109.47111 * 270.32857 * 1 2 3 28 28 H 1.09008 * 109.46915 * 30.32182 * 1 2 3 29 29 H 1.08997 * 109.47509 * 150.32248 * 1 2 3 30 30 H 1.09001 * 109.47026 * 179.69390 * 5 4 3 31 31 H 1.09001 * 109.46512 * 300.00213 * 6 5 4 32 32 H 1.08998 * 109.46894 * 180.02562 * 6 5 4 33 33 H 1.09000 * 109.47036 * 59.99453 * 6 5 4 34 34 H 1.08996 * 109.47087 * 300.00585 * 7 5 4 35 35 H 1.09000 * 109.46610 * 60.00246 * 7 5 4 36 36 H 1.08996 * 109.47403 * 179.97438 * 7 5 4 37 37 H 1.07999 * 127.02133 * 180.24169 * 8 4 3 38 38 H 0.96999 * 119.99957 * 185.00160 * 16 15 13 39 39 H 1.08001 * 120.03521 * 0.02562 * 22 21 12 40 40 H 1.08002 * 119.96043 * 180.20701 * 23 22 21 41 41 H 1.08000 * 119.92003 * 179.76168 * 24 23 22 42 42 H 1.08004 * 119.96293 * 179.97438 * 25 24 23 43 43 H 1.07993 * 120.03918 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2892 1.0839 0.0000 4 6 3.5862 0.7388 -0.0029 5 6 4.7461 1.7009 -0.0069 6 6 4.6772 2.5882 1.2377 7 6 4.6794 2.5750 -1.2608 8 6 3.6857 -0.5991 0.0043 9 6 2.3058 -1.1072 0.0063 10 6 1.8756 -2.5154 0.0135 11 8 0.6993 -2.7912 0.1543 12 7 2.7851 -3.4987 -0.1359 13 6 4.1177 -3.1921 -0.2201 14 1 4.4599 -2.4643 -0.9409 15 6 5.0288 -3.8174 0.6218 16 7 4.6271 -4.7696 1.4337 17 14 6.8251 -3.3050 0.5996 18 1 7.0409 -2.2147 1.5842 19 1 7.6762 -4.4688 0.9552 20 1 7.1859 -2.8243 -0.7584 21 6 2.3690 -4.8306 -0.2048 22 6 1.7781 -5.4338 0.8991 23 6 1.3645 -6.7492 0.8260 24 6 1.5460 -7.4691 -0.3409 25 6 2.1380 -6.8735 -1.4399 26 6 2.5506 -5.5574 -1.3754 27 1 -0.3633 0.0059 1.0276 28 1 -0.3633 0.8872 -0.5189 29 1 -0.3634 -0.8928 -0.5088 30 1 5.6819 1.1419 -0.0031 31 1 3.7414 3.1471 1.2339 32 1 5.5159 3.2844 1.2345 33 1 4.7247 1.9654 2.1310 34 1 4.7285 1.9429 -2.1474 35 1 3.7436 3.1340 -1.2645 36 1 5.5180 3.2712 -1.2635 37 1 4.5938 -1.1837 0.0078 38 1 5.2467 -5.1559 2.0723 39 1 1.6395 -4.8733 1.8118 40 1 0.9023 -7.2176 1.6824 41 1 1.2251 -8.4989 -0.3940 42 1 2.2785 -7.4388 -2.3494 43 1 3.0132 -5.0931 -2.2338 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341650737.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:40 Heat of formation + Delta-G solvation = -6.968924 kcal Electronic energy + Delta-G solvation = -26433.804691 eV Core-core repulsion = 22831.205733 eV Total energy + Delta-G solvation = -3602.598958 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.146 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.44722 -41.01666 -38.95121 -36.77361 -36.41439 -33.86046 -33.65799 -32.17489 -31.60626 -30.46285 -28.01022 -27.78111 -26.89159 -24.64358 -23.29810 -22.92026 -22.55377 -21.60215 -20.51037 -18.62334 -17.95025 -17.50693 -17.18865 -16.95727 -16.70683 -16.26012 -15.86686 -15.69787 -15.25543 -14.91076 -14.78757 -14.39785 -14.16102 -14.10931 -13.94862 -13.89272 -13.64469 -13.41532 -13.31671 -13.08323 -12.98595 -12.89042 -12.52340 -12.28004 -12.11099 -12.09823 -12.01504 -11.88297 -11.77813 -10.99517 -10.62463 -10.50425 -9.86230 -9.61342 -9.27259 -9.04892 -8.24576 -6.24001 0.45147 0.72320 0.79400 1.26635 1.40955 1.42968 1.51458 1.87170 2.23417 2.57378 2.87820 2.98593 3.23799 3.56312 3.92695 4.10931 4.20884 4.22142 4.23567 4.27191 4.39382 4.42544 4.46888 4.64535 4.71677 4.75647 4.81256 4.86806 4.89893 4.94751 4.96540 5.02362 5.10921 5.17038 5.27479 5.30889 5.37331 5.38853 5.43872 5.63420 5.65451 5.75209 5.91401 6.09966 6.23593 6.27326 6.54964 7.04113 7.43920 7.92593 8.72483 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.013738 B = 0.005472 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.585072 B = 5116.094478 C = 6561.401927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.043 3.957 3 O -0.171 6.171 4 C -0.025 4.025 5 C -0.013 4.013 6 C -0.143 4.143 7 C -0.142 4.142 8 C -0.181 4.181 9 C -0.236 4.236 10 C 0.542 3.458 11 O -0.613 6.613 12 N -0.414 5.414 13 C -0.357 4.357 14 H 0.099 0.901 15 C 0.013 3.987 16 N -0.881 5.881 17 Si 0.968 3.032 18 H -0.262 1.262 19 H -0.284 1.284 20 H -0.250 1.250 21 C 0.183 3.817 22 C -0.100 4.100 23 C -0.124 4.124 24 C -0.143 4.143 25 C -0.116 4.116 26 C -0.154 4.154 27 H 0.089 0.911 28 H 0.103 0.897 29 H 0.083 0.917 30 H 0.105 0.895 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.046 0.954 34 H 0.051 0.949 35 H 0.056 0.944 36 H 0.089 0.911 37 H 0.169 0.831 38 H 0.269 0.731 39 H 0.076 0.924 40 H 0.135 0.865 41 H 0.152 0.848 42 H 0.148 0.852 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.018 8.680 -3.320 9.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.011 4.011 3 O -0.068 6.068 4 C -0.074 4.074 5 C -0.031 4.031 6 C -0.201 4.201 7 C -0.199 4.199 8 C -0.200 4.200 9 C -0.240 4.240 10 C 0.335 3.665 11 O -0.501 6.501 12 N -0.129 5.129 13 C -0.484 4.484 14 H 0.117 0.883 15 C -0.192 4.192 16 N -0.515 5.515 17 Si 0.789 3.211 18 H -0.187 1.187 19 H -0.210 1.210 20 H -0.173 1.173 21 C 0.092 3.908 22 C -0.120 4.120 23 C -0.143 4.143 24 C -0.161 4.161 25 C -0.135 4.135 26 C -0.174 4.174 27 H 0.107 0.893 28 H 0.121 0.879 29 H 0.102 0.898 30 H 0.123 0.877 31 H 0.076 0.924 32 H 0.109 0.891 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.108 0.892 37 H 0.186 0.814 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.152 0.848 41 H 0.170 0.830 42 H 0.166 0.834 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.467 8.660 -3.156 9.229 hybrid contribution 0.998 -0.452 0.508 1.207 sum 1.465 8.208 -2.648 8.748 Atomic orbital electron populations 1.20448 0.82446 1.04686 1.04420 1.23052 0.94746 0.82887 1.00365 1.83579 1.16894 1.34269 1.72105 1.22856 0.82857 0.94709 1.06929 1.19954 0.90965 0.93974 0.98222 1.21846 1.03313 0.99270 0.95628 1.21832 1.03262 0.99333 0.95439 1.23561 0.97828 0.93284 1.05350 1.21143 0.94914 0.93039 1.14941 1.18057 0.84913 0.85549 0.77953 1.90572 1.18620 1.84978 1.55914 1.40953 1.06648 1.02175 1.63117 1.19700 0.80834 1.26760 1.21079 0.88347 1.26434 1.04063 0.94328 0.94376 1.70048 1.37847 1.23301 1.20300 0.85317 0.77326 0.78344 0.80068 1.18703 1.21007 1.17288 1.17954 0.93834 0.85920 0.93059 1.20806 0.99617 0.95576 0.95956 1.21153 1.00636 0.93210 0.99296 1.21275 1.01284 1.00735 0.92775 1.21177 0.98869 0.93581 0.99832 1.21200 1.03287 0.96260 0.96643 0.89253 0.87856 0.89835 0.87665 0.92398 0.89140 0.93437 0.92938 0.92457 0.89225 0.81424 0.92128 0.90559 0.84755 0.83007 0.83418 0.87306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.05 9.82 71.24 0.70 -1.35 16 2 C 0.04 1.67 7.38 25.29 0.19 1.86 16 3 O -0.17 -6.06 10.52 4.27 0.04 -6.02 16 4 C -0.03 -0.87 5.79 24.76 0.14 -0.73 16 5 C -0.01 -0.32 3.32 -11.54 -0.04 -0.36 16 6 C -0.14 -3.01 9.18 71.98 0.66 -2.35 16 7 C -0.14 -2.82 9.18 71.98 0.66 -2.16 16 8 C -0.18 -7.60 9.05 23.65 0.21 -7.39 16 9 C -0.24 -11.02 6.16 -19.00 -0.12 -11.14 16 10 C 0.54 29.05 7.49 86.61 0.65 29.70 16 11 O -0.61 -34.25 14.48 -4.15 -0.06 -34.31 16 12 N -0.41 -22.44 2.55 -462.48 -1.18 -23.62 16 13 C -0.36 -18.55 6.31 84.05 0.53 -18.02 16 14 H 0.10 4.91 5.70 -2.91 -0.02 4.89 16 15 C 0.01 0.68 5.42 84.92 0.46 1.14 16 16 N -0.88 -48.24 11.61 21.66 0.25 -47.99 16 17 Si 0.97 39.01 29.02 68.60 1.99 41.00 16 18 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 19 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 20 H -0.25 -9.34 7.11 99.48 0.71 -8.64 16 21 C 0.18 9.59 3.54 38.24 0.14 9.73 16 22 C -0.10 -5.07 8.42 22.41 0.19 -4.88 16 23 C -0.12 -5.14 10.04 22.25 0.22 -4.92 16 24 C -0.14 -5.13 10.04 22.30 0.22 -4.91 16 25 C -0.12 -4.41 10.04 22.25 0.22 -4.18 16 26 C -0.15 -7.16 9.77 22.41 0.22 -6.94 16 27 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 28 H 0.10 2.50 8.14 -2.38 -0.02 2.48 16 29 H 0.08 3.06 6.67 -2.39 -0.02 3.04 16 30 H 0.11 2.44 8.09 -2.39 -0.02 2.42 16 31 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.17 7.25 4.57 -2.91 -0.01 7.23 16 38 H 0.27 14.06 8.32 -92.71 -0.77 13.29 16 39 H 0.08 4.25 8.06 -2.91 -0.02 4.22 16 40 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 41 H 0.15 4.07 8.06 -2.91 -0.02 4.05 16 42 H 0.15 4.35 8.06 -2.91 -0.02 4.33 16 43 H 0.11 4.94 8.06 -2.91 -0.02 4.91 16 Total: -1.00 -68.78 359.22 7.32 -61.46 By element: Atomic # 1 Polarization: 35.37 SS G_CDS: 1.01 Total: 36.38 kcal Atomic # 6 Polarization: -32.17 SS G_CDS: 5.26 Total: -26.91 kcal Atomic # 7 Polarization: -70.68 SS G_CDS: -0.93 Total: -71.61 kcal Atomic # 8 Polarization: -40.31 SS G_CDS: -0.02 Total: -40.33 kcal Atomic # 14 Polarization: 39.01 SS G_CDS: 1.99 Total: 41.00 kcal Total: -68.78 7.32 -61.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341650737.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.492 kcal (2) G-P(sol) polarization free energy of solvation -68.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds