Wall clock time and date at job start Tue Mar 31 2020 10:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34245 * 125.03699 * 2 1 4 4 C 1.46480 * 106.99455 * 180.26802 * 3 2 1 5 5 C 1.39639 * 134.02608 * 179.75785 * 4 3 2 6 6 C 1.36627 * 119.76226 * 179.97438 * 5 4 3 7 7 C 1.38830 * 120.52733 * 359.97438 * 6 5 4 8 8 C 1.37745 * 120.67125 * 359.97438 * 7 6 5 9 9 C 1.39127 * 119.77550 * 0.02562 * 8 7 6 10 10 N 1.36833 * 125.03760 * 179.80909 * 2 1 3 11 11 C 1.46499 * 125.05877 * 359.97438 * 10 2 1 12 12 C 1.50700 * 109.47530 * 269.69914 * 11 10 2 13 13 O 1.20828 * 119.99974 * 359.97438 * 12 11 10 14 14 O 1.34230 * 120.00084 * 180.02562 * 12 11 10 15 15 C 1.45198 * 116.99697 * 182.84187 * 14 12 11 16 16 C 1.50694 * 112.85252 * 294.96586 * 15 14 12 17 17 H 1.08006 * 120.00151 * 113.84895 * 16 15 14 18 18 C 1.37882 * 120.00135 * 293.84920 * 16 15 14 19 19 N 1.31513 * 119.99702 * 6.34353 * 18 16 15 20 20 Si 1.86799 * 120.00058 * 186.34243 * 18 16 15 21 21 H 1.48506 * 109.46843 * 180.02562 * 20 18 16 22 22 H 1.48491 * 109.47298 * 300.00124 * 20 18 16 23 23 H 1.48493 * 109.46887 * 60.00508 * 20 18 16 24 24 C 1.53781 * 113.69019 * 66.23961 * 15 14 12 25 25 C 1.53782 * 87.08442 * 89.12343 * 24 15 14 26 26 C 1.53777 * 87.07891 * 25.43159 * 25 24 15 27 27 H 1.09005 * 109.46865 * 270.19022 * 1 2 3 28 28 H 1.08998 * 109.47095 * 30.18544 * 1 2 3 29 29 H 1.09000 * 109.47271 * 150.19029 * 1 2 3 30 30 H 1.07995 * 126.49739 * 359.97438 * 3 2 1 31 31 H 1.07996 * 120.11724 * 0.02562 * 5 4 3 32 32 H 1.07996 * 119.73546 * 180.02562 * 6 5 4 33 33 H 1.08002 * 119.66802 * 179.97438 * 7 6 5 34 34 H 1.07994 * 120.11481 * 179.97438 * 8 7 6 35 35 H 1.09002 * 109.47105 * 149.69371 * 11 10 2 36 36 H 1.09007 * 109.47502 * 29.69977 * 11 10 2 37 37 H 0.97003 * 120.00284 * 355.05159 * 19 18 16 38 38 H 1.09001 * 113.61407 * 203.67493 * 24 15 14 39 39 H 1.09003 * 113.61424 * 334.57236 * 24 15 14 40 40 H 1.09000 * 113.61012 * 270.88246 * 25 24 15 41 41 H 1.09001 * 113.69085 * 139.99188 * 25 24 15 42 42 H 1.08998 * 113.61320 * 220.01297 * 26 25 24 43 43 H 1.09003 * 113.69136 * 89.12600 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2777 1.0992 0.0000 4 6 3.6704 0.6455 -0.0066 5 6 4.9041 1.2996 -0.0138 6 6 6.0589 0.5694 -0.0182 7 6 6.0158 -0.8182 -0.0151 8 6 4.8099 -1.4838 -0.0069 9 6 3.6215 -0.7603 -0.0023 10 7 2.2926 -1.1203 0.0037 11 6 1.7938 -2.4978 0.0089 12 6 1.6303 -2.9677 1.4314 13 8 1.9029 -2.2280 2.3471 14 8 1.1828 -4.2083 1.6812 15 6 0.9896 -4.5713 3.0737 16 6 2.2779 -4.6011 3.8549 17 1 2.4459 -3.8860 4.6468 18 6 3.2421 -5.5412 3.5589 19 7 3.0935 -6.3299 2.5171 20 14 4.7594 -5.6944 4.6376 21 1 5.6358 -6.7706 4.1092 22 1 5.5004 -4.4076 4.6354 23 1 4.3486 -6.0267 6.0254 24 6 -0.1337 -3.7829 3.7677 25 6 -1.0944 -4.8853 3.2917 26 6 0.1219 -5.8260 3.2685 27 1 -0.3633 0.0034 1.0277 28 1 -0.3633 0.8883 -0.5167 29 1 -0.3634 -0.8917 -0.5109 30 1 1.9356 2.1235 -0.0004 31 1 4.9453 2.3788 -0.0150 32 1 7.0128 1.0757 -0.0234 33 1 6.9372 -1.3817 -0.0190 34 1 4.7868 -2.5634 -0.0049 35 1 2.5042 -3.1434 -0.5077 36 1 0.8305 -2.5375 -0.4998 37 1 2.2739 -6.3001 1.9991 38 1 -0.0276 -3.7341 4.8514 39 1 -0.3275 -2.8099 3.3161 40 1 -1.5202 -4.6977 2.3060 41 1 -1.8456 -5.1611 4.0318 42 1 0.1343 -6.5025 2.4139 43 1 0.2989 -6.3365 4.2151 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810856447.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:14:36 Heat of formation + Delta-G solvation = -2.413865 kcal Electronic energy + Delta-G solvation = -26647.735211 eV Core-core repulsion = 23045.333775 eV Total energy + Delta-G solvation = -3602.401436 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.146 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.28350 -39.61914 -37.49367 -36.74707 -34.37560 -32.86472 -32.48368 -31.12126 -30.13616 -27.35480 -26.40267 -25.90367 -24.82332 -22.87562 -21.88895 -21.32237 -20.88949 -19.33957 -18.54043 -17.62190 -16.83647 -16.47294 -16.19581 -15.32832 -15.13280 -14.91481 -14.37612 -14.19539 -13.91065 -13.78216 -13.54128 -13.32009 -12.98077 -12.86775 -12.64174 -12.43564 -12.27959 -12.09576 -11.89274 -11.48365 -11.33044 -11.10838 -10.90038 -10.62157 -10.60976 -10.48840 -10.28246 -10.20054 -10.09545 -9.66244 -9.34858 -9.08798 -8.54765 -8.24935 -7.85847 -7.40813 -6.47969 -4.26017 1.35987 1.85976 2.67263 2.94883 3.10441 3.37952 3.41006 3.59139 3.71701 4.19250 4.43584 4.72028 4.82579 4.89588 5.16143 5.19762 5.23334 5.27563 5.34426 5.38772 5.45512 5.54896 5.60488 5.63323 5.71163 5.75471 5.83325 5.89202 6.04047 6.16003 6.17058 6.22091 6.31130 6.56770 6.61207 6.70360 6.76181 6.83477 6.98976 6.99320 7.06105 7.21246 7.43597 7.48115 7.58386 8.03958 8.34489 8.72705 8.86329 9.49746 10.89783 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.012829 B = 0.005512 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.103350 B = 5078.220345 C = 6677.153555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.092 3.908 3 C -0.210 4.210 4 C -0.104 4.104 5 C -0.079 4.079 6 C -0.148 4.148 7 C -0.105 4.105 8 C -0.118 4.118 9 C 0.110 3.890 10 N -0.462 5.462 11 C 0.109 3.891 12 C 0.443 3.557 13 O -0.480 6.480 14 O -0.356 6.356 15 C 0.212 3.788 16 C -0.592 4.592 17 H 0.058 0.942 18 C 0.033 3.967 19 N -0.890 5.890 20 Si 1.063 2.937 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.285 1.285 24 C -0.143 4.143 25 C -0.148 4.148 26 C -0.108 4.108 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.144 0.856 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.123 0.877 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.278 0.722 38 H 0.082 0.918 39 H 0.050 0.950 40 H 0.069 0.931 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.169 9.796 -7.685 12.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.015 4.015 3 C -0.234 4.234 4 C -0.108 4.108 5 C -0.097 4.097 6 C -0.167 4.167 7 C -0.124 4.124 8 C -0.139 4.139 9 C 0.005 3.995 10 N -0.146 5.146 11 C -0.015 4.015 12 C 0.282 3.718 13 O -0.366 6.366 14 O -0.273 6.273 15 C 0.178 3.822 16 C -0.629 4.629 17 H 0.077 0.923 18 C -0.175 4.175 19 N -0.525 5.525 20 Si 0.890 3.110 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.211 1.211 24 C -0.181 4.181 25 C -0.186 4.186 26 C -0.145 4.145 27 H 0.097 0.903 28 H 0.102 0.898 29 H 0.085 0.915 30 H 0.162 0.838 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.141 0.859 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.069 0.931 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.824 8.864 -7.212 11.572 hybrid contribution -1.391 0.709 0.071 1.563 sum -3.216 9.573 -7.141 12.369 Atomic orbital electron populations 1.20493 0.88132 1.03228 1.03349 1.20265 0.93376 0.85307 1.02531 1.21303 0.90371 0.97222 1.14534 1.19127 0.93620 0.91836 1.06217 1.20168 0.90513 0.99061 0.99970 1.20558 0.97732 0.93933 1.04522 1.20747 0.96589 0.94364 1.00689 1.20133 0.89891 0.99412 1.04446 1.18165 0.84022 0.93929 1.03357 1.43377 1.04096 1.04335 1.62776 1.21215 1.03407 0.81999 0.94847 1.23074 0.76001 0.81743 0.91008 1.90646 1.44364 1.55583 1.46020 1.86393 1.75532 1.29954 1.35452 1.20948 0.94209 0.91601 0.75435 1.22033 1.03043 1.18333 1.19502 0.92330 1.25868 1.01985 0.92792 0.96884 1.70725 1.28250 1.38799 1.14750 0.83635 0.75462 0.76542 0.75349 1.20578 1.21245 1.21086 1.23307 0.97009 0.96679 1.01062 1.22960 0.96718 0.98707 1.00204 1.22933 0.93748 0.96252 1.01612 0.90328 0.89775 0.91527 0.83847 0.86438 0.86395 0.85942 0.86289 0.86257 0.86401 0.90975 0.89927 0.93081 0.91272 0.92507 0.92257 0.89276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.09 10.03 36.00 0.36 -0.73 16 2 C 0.09 1.41 6.83 -81.77 -0.56 0.85 16 3 C -0.21 -3.18 10.95 -37.67 -0.41 -3.59 16 4 C -0.10 -1.75 6.37 -105.14 -0.67 -2.42 16 5 C -0.08 -1.15 10.05 -39.64 -0.40 -1.55 16 6 C -0.15 -2.08 9.97 -39.94 -0.40 -2.48 16 7 C -0.10 -1.60 10.01 -39.54 -0.40 -1.99 16 8 C -0.12 -2.09 9.97 -39.43 -0.39 -2.48 16 9 C 0.11 2.02 6.81 -83.99 -0.57 1.45 16 10 N -0.46 -8.00 2.27 -111.13 -0.25 -8.25 16 11 C 0.11 1.83 6.37 -5.19 -0.03 1.80 16 12 C 0.44 9.79 7.41 36.01 0.27 10.06 16 13 O -0.48 -12.27 14.54 -18.75 -0.27 -12.54 16 14 O -0.36 -8.44 9.22 -39.26 -0.36 -8.80 16 15 C 0.21 5.18 0.11 -90.96 -0.01 5.17 16 16 C -0.59 -16.53 7.36 -34.44 -0.25 -16.79 16 17 H 0.06 1.73 7.82 -52.48 -0.41 1.31 16 18 C 0.03 0.92 5.36 -17.82 -0.10 0.82 16 19 N -0.89 -25.62 13.52 55.43 0.75 -24.87 16 20 Si 1.06 25.26 29.91 -169.99 -5.08 20.17 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 24 C -0.14 -3.09 6.90 -25.92 -0.18 -3.27 16 25 C -0.15 -2.76 8.03 -25.92 -0.21 -2.97 16 26 C -0.11 -2.35 6.55 -25.92 -0.17 -2.52 16 27 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.69 6.91 -51.93 -0.36 0.33 16 30 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16 31 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 32 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 33 H 0.12 1.58 8.06 -52.49 -0.42 1.15 16 34 H 0.12 2.10 8.06 -52.49 -0.42 1.68 16 35 H 0.12 1.87 8.10 -51.93 -0.42 1.45 16 36 H 0.12 1.54 6.87 -51.93 -0.36 1.18 16 37 H 0.28 7.94 5.76 -40.82 -0.24 7.70 16 38 H 0.08 1.79 8.09 -51.93 -0.42 1.37 16 39 H 0.05 1.10 7.33 -51.93 -0.38 0.72 16 40 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.06 1.29 7.74 -51.93 -0.40 0.89 16 43 H 0.09 1.97 8.09 -51.93 -0.42 1.55 16 LS Contribution 359.46 15.07 5.42 5.42 Total: -1.00 -33.51 359.46 -9.93 -43.44 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -6.01 Total: 6.06 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: -4.12 Total: -20.64 kcal Atomic # 7 Polarization: -33.61 SS G_CDS: 0.50 Total: -33.12 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -0.63 Total: -21.34 kcal Atomic # 14 Polarization: 25.26 SS G_CDS: -5.08 Total: 20.17 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.51 -9.93 -43.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810856447.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.023 kcal (2) G-P(sol) polarization free energy of solvation -33.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds