Wall clock time and date at job start Tue Mar 31 2020 10:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34245 * 125.03699 * 2 1 4 4 C 1.46480 * 106.99455 * 180.26802 * 3 2 1 5 5 C 1.39639 * 134.02608 * 179.75785 * 4 3 2 6 6 C 1.36627 * 119.76226 * 179.97438 * 5 4 3 7 7 C 1.38830 * 120.52733 * 359.97438 * 6 5 4 8 8 C 1.37745 * 120.67125 * 359.97438 * 7 6 5 9 9 C 1.39127 * 119.77550 * 0.02562 * 8 7 6 10 10 N 1.36833 * 125.03760 * 179.80909 * 2 1 3 11 11 C 1.46499 * 125.05877 * 359.97438 * 10 2 1 12 12 C 1.50700 * 109.47530 * 269.69914 * 11 10 2 13 13 O 1.20828 * 119.99974 * 359.97438 * 12 11 10 14 14 O 1.34230 * 120.00084 * 180.02562 * 12 11 10 15 15 C 1.45198 * 116.99697 * 182.84187 * 14 12 11 16 16 C 1.50694 * 112.85252 * 294.96586 * 15 14 12 17 17 H 1.08006 * 120.00151 * 113.84895 * 16 15 14 18 18 C 1.37882 * 120.00135 * 293.84920 * 16 15 14 19 19 N 1.31513 * 119.99702 * 6.34353 * 18 16 15 20 20 Si 1.86799 * 120.00058 * 186.34243 * 18 16 15 21 21 H 1.48506 * 109.46843 * 180.02562 * 20 18 16 22 22 H 1.48491 * 109.47298 * 300.00124 * 20 18 16 23 23 H 1.48493 * 109.46887 * 60.00508 * 20 18 16 24 24 C 1.53781 * 113.69019 * 66.23961 * 15 14 12 25 25 C 1.53782 * 87.08442 * 89.12343 * 24 15 14 26 26 C 1.53777 * 87.07891 * 25.43159 * 25 24 15 27 27 H 1.09005 * 109.46865 * 270.19022 * 1 2 3 28 28 H 1.08998 * 109.47095 * 30.18544 * 1 2 3 29 29 H 1.09000 * 109.47271 * 150.19029 * 1 2 3 30 30 H 1.07995 * 126.49739 * 359.97438 * 3 2 1 31 31 H 1.07996 * 120.11724 * 0.02562 * 5 4 3 32 32 H 1.07996 * 119.73546 * 180.02562 * 6 5 4 33 33 H 1.08002 * 119.66802 * 179.97438 * 7 6 5 34 34 H 1.07994 * 120.11481 * 179.97438 * 8 7 6 35 35 H 1.09002 * 109.47105 * 149.69371 * 11 10 2 36 36 H 1.09007 * 109.47502 * 29.69977 * 11 10 2 37 37 H 0.97003 * 120.00284 * 355.05159 * 19 18 16 38 38 H 1.09001 * 113.61407 * 203.67493 * 24 15 14 39 39 H 1.09003 * 113.61424 * 334.57236 * 24 15 14 40 40 H 1.09000 * 113.61012 * 270.88246 * 25 24 15 41 41 H 1.09001 * 113.69085 * 139.99188 * 25 24 15 42 42 H 1.08998 * 113.61320 * 220.01297 * 26 25 24 43 43 H 1.09003 * 113.69136 * 89.12600 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2777 1.0992 0.0000 4 6 3.6704 0.6455 -0.0066 5 6 4.9041 1.2996 -0.0138 6 6 6.0589 0.5694 -0.0182 7 6 6.0158 -0.8182 -0.0151 8 6 4.8099 -1.4838 -0.0069 9 6 3.6215 -0.7603 -0.0023 10 7 2.2926 -1.1203 0.0037 11 6 1.7938 -2.4978 0.0089 12 6 1.6303 -2.9677 1.4314 13 8 1.9029 -2.2280 2.3471 14 8 1.1828 -4.2083 1.6812 15 6 0.9896 -4.5713 3.0737 16 6 2.2779 -4.6011 3.8549 17 1 2.4459 -3.8860 4.6468 18 6 3.2421 -5.5412 3.5589 19 7 3.0935 -6.3299 2.5171 20 14 4.7594 -5.6944 4.6376 21 1 5.6358 -6.7706 4.1092 22 1 5.5004 -4.4076 4.6354 23 1 4.3486 -6.0267 6.0254 24 6 -0.1337 -3.7829 3.7677 25 6 -1.0944 -4.8853 3.2917 26 6 0.1219 -5.8260 3.2685 27 1 -0.3633 0.0034 1.0277 28 1 -0.3633 0.8883 -0.5167 29 1 -0.3634 -0.8917 -0.5109 30 1 1.9356 2.1235 -0.0004 31 1 4.9453 2.3788 -0.0150 32 1 7.0128 1.0757 -0.0234 33 1 6.9372 -1.3817 -0.0190 34 1 4.7868 -2.5634 -0.0049 35 1 2.5042 -3.1434 -0.5077 36 1 0.8305 -2.5375 -0.4998 37 1 2.2739 -6.3001 1.9991 38 1 -0.0276 -3.7341 4.8514 39 1 -0.3275 -2.8099 3.3161 40 1 -1.5202 -4.6977 2.3060 41 1 -1.8456 -5.1611 4.0318 42 1 0.1343 -6.5025 2.4139 43 1 0.2989 -6.3365 4.2151 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810856447.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:14:35 Heat of formation + Delta-G solvation = -18.775476 kcal Electronic energy + Delta-G solvation = -26648.444703 eV Core-core repulsion = 23045.333775 eV Total energy + Delta-G solvation = -3603.110929 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.146 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.52890 -41.37802 -39.14344 -38.03958 -36.20184 -34.59430 -34.12434 -32.20513 -31.34925 -28.73080 -27.96135 -27.38209 -26.57287 -24.70081 -23.23310 -22.50905 -22.37100 -20.60961 -20.34488 -19.54939 -18.21387 -18.07800 -17.43213 -17.05408 -16.83910 -16.06542 -15.85686 -15.77749 -15.65968 -15.22276 -14.91528 -14.79106 -14.54038 -14.05729 -13.93430 -13.84099 -13.65288 -13.34910 -13.27685 -13.04502 -12.82348 -12.42959 -12.40344 -12.36469 -12.30276 -12.10342 -11.98679 -11.87813 -11.78574 -11.36991 -10.94801 -10.67716 -10.56008 -10.21958 -9.08064 -8.67619 -8.60131 -6.45990 0.16197 0.63096 1.33577 1.39984 1.43442 1.50168 1.69560 1.77097 2.16785 2.45366 2.97116 3.10624 3.55476 3.61341 3.68074 3.74830 3.77130 3.92258 3.94748 4.09092 4.12064 4.21320 4.41324 4.44142 4.49841 4.55145 4.63055 4.67603 4.69868 4.84073 4.93595 4.94095 4.98529 5.03147 5.05412 5.14090 5.31483 5.46952 5.53068 5.65343 5.68060 5.82672 5.91332 6.03661 6.16184 6.24348 6.28267 6.55690 7.04695 7.34920 8.70562 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.012829 B = 0.005512 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.103350 B = 5078.220345 C = 6677.153555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.077 3.923 3 C -0.215 4.215 4 C -0.126 4.126 5 C -0.081 4.081 6 C -0.148 4.148 7 C -0.107 4.107 8 C -0.152 4.152 9 C 0.076 3.924 10 N -0.472 5.472 11 C 0.119 3.881 12 C 0.437 3.563 13 O -0.522 6.522 14 O -0.360 6.360 15 C 0.188 3.812 16 C -0.607 4.607 17 H 0.029 0.971 18 C -0.007 4.007 19 N -0.908 5.908 20 Si 1.098 2.902 21 H -0.274 1.274 22 H -0.291 1.291 23 H -0.265 1.265 24 C -0.142 4.142 25 C -0.118 4.118 26 C -0.108 4.108 27 H 0.068 0.932 28 H 0.115 0.885 29 H 0.079 0.921 30 H 0.173 0.827 31 H 0.149 0.851 32 H 0.153 0.847 33 H 0.142 0.858 34 H 0.102 0.898 35 H 0.125 0.875 36 H 0.160 0.840 37 H 0.272 0.728 38 H 0.075 0.925 39 H 0.046 0.954 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.056 0.944 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.949 11.136 -8.465 14.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.028 4.028 3 C -0.239 4.239 4 C -0.130 4.130 5 C -0.099 4.099 6 C -0.166 4.166 7 C -0.126 4.126 8 C -0.173 4.173 9 C -0.029 4.029 10 N -0.157 5.157 11 C -0.005 4.005 12 C 0.279 3.721 13 O -0.410 6.410 14 O -0.277 6.277 15 C 0.154 3.846 16 C -0.645 4.645 17 H 0.048 0.952 18 C -0.210 4.210 19 N -0.545 5.545 20 Si 0.921 3.079 21 H -0.198 1.198 22 H -0.217 1.217 23 H -0.189 1.189 24 C -0.180 4.180 25 C -0.155 4.155 26 C -0.146 4.146 27 H 0.087 0.913 28 H 0.133 0.867 29 H 0.097 0.903 30 H 0.190 0.810 31 H 0.166 0.834 32 H 0.171 0.829 33 H 0.160 0.840 34 H 0.120 0.880 35 H 0.143 0.857 36 H 0.178 0.822 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.065 0.935 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.075 0.925 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.624 10.209 -8.003 13.235 hybrid contribution -1.089 0.407 0.305 1.201 sum -3.713 10.616 -7.698 13.629 Atomic orbital electron populations 1.20614 0.85504 1.05460 1.03299 1.20965 0.95127 0.84756 1.01950 1.21734 0.89624 0.98600 1.13987 1.19615 0.95307 0.91516 1.06572 1.20615 0.89884 1.00743 0.98632 1.20975 0.99227 0.93343 1.03101 1.21105 0.96473 0.95502 0.99560 1.20259 0.91200 0.98892 1.06946 1.18550 0.84598 0.95123 1.04637 1.43540 1.04190 1.04670 1.63321 1.21288 1.05708 0.82312 0.91157 1.24132 0.74364 0.80689 0.92932 1.90617 1.46071 1.56383 1.47915 1.86357 1.75782 1.31035 1.34520 1.21146 0.93668 0.94113 0.75702 1.22182 1.05034 1.17650 1.19598 0.95219 1.26937 1.04264 0.92498 0.97336 1.70814 1.28279 1.39807 1.15554 0.83177 0.73107 0.76367 0.75232 1.19843 1.21718 1.18944 1.23248 0.97124 0.97245 1.00357 1.22831 0.95726 0.95011 1.01966 1.22879 0.95012 0.95685 1.00980 0.91316 0.86656 0.90254 0.81006 0.83380 0.82894 0.84019 0.88004 0.85700 0.82246 0.91708 0.90672 0.93515 0.89405 0.89274 0.92537 0.90182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.91 10.03 71.24 0.71 -1.19 16 2 C 0.08 2.29 6.83 40.87 0.28 2.56 16 3 C -0.22 -6.22 10.95 23.51 0.26 -5.96 16 4 C -0.13 -4.15 6.37 -20.20 -0.13 -4.28 16 5 C -0.08 -2.21 10.05 22.23 0.22 -1.99 16 6 C -0.15 -3.86 9.97 22.03 0.22 -3.65 16 7 C -0.11 -3.25 10.01 22.29 0.22 -3.03 16 8 C -0.15 -5.58 9.97 22.37 0.22 -5.36 16 9 C 0.08 2.81 6.81 39.03 0.27 3.08 16 10 N -0.47 -16.34 2.27 -505.51 -1.15 -17.48 16 11 C 0.12 3.98 6.37 85.63 0.55 4.53 16 12 C 0.44 19.70 7.41 71.24 0.53 20.23 16 13 O -0.52 -27.52 14.54 21.96 0.32 -27.20 16 14 O -0.36 -17.28 9.22 -51.42 -0.47 -17.75 16 15 C 0.19 9.34 0.11 -11.01 0.00 9.34 16 16 C -0.61 -35.04 7.36 25.60 0.19 -34.85 16 17 H 0.03 1.83 7.82 -2.91 -0.02 1.80 16 18 C -0.01 -0.40 5.36 84.66 0.45 0.05 16 19 N -0.91 -53.37 13.52 21.45 0.29 -53.08 16 20 Si 1.10 51.92 29.91 68.60 2.05 53.98 16 21 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 22 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 23 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 24 C -0.14 -6.13 6.90 31.12 0.21 -5.91 16 25 C -0.12 -4.14 8.03 31.12 0.25 -3.89 16 26 C -0.11 -4.67 6.55 31.12 0.20 -4.46 16 27 H 0.07 1.58 8.14 -2.38 -0.02 1.57 16 28 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.08 1.42 6.91 -2.39 -0.02 1.40 16 30 H 0.17 3.75 8.06 -2.91 -0.02 3.72 16 31 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 32 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 33 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 34 H 0.10 3.89 8.06 -2.91 -0.02 3.87 16 35 H 0.13 4.01 8.10 -2.39 -0.02 3.99 16 36 H 0.16 3.88 6.87 -2.38 -0.02 3.86 16 37 H 0.27 15.86 5.76 -92.71 -0.53 15.32 16 38 H 0.07 3.29 8.09 -2.39 -0.02 3.27 16 39 H 0.05 2.02 7.33 -2.39 -0.02 2.00 16 40 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 41 H 0.09 2.58 8.14 -2.39 -0.02 2.57 16 42 H 0.06 2.44 7.74 -2.39 -0.02 2.42 16 43 H 0.08 3.55 8.09 -2.39 -0.02 3.53 16 Total: -1.00 -75.91 359.46 6.94 -68.97 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: 1.24 Total: 27.35 kcal Atomic # 6 Polarization: -39.44 SS G_CDS: 4.66 Total: -34.78 kcal Atomic # 7 Polarization: -69.71 SS G_CDS: -0.86 Total: -70.57 kcal Atomic # 8 Polarization: -44.80 SS G_CDS: -0.15 Total: -44.95 kcal Atomic # 14 Polarization: 51.92 SS G_CDS: 2.05 Total: 53.98 kcal Total: -75.91 6.94 -68.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810856447.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.192 kcal (2) G-P(sol) polarization free energy of solvation -75.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds