Wall clock time and date at job start Tue Mar 31 2020 11:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35371 * 127.24623 * 2 1 4 4 N 1.35037 * 107.22502 * 179.87996 * 3 2 1 5 5 C 1.46504 * 124.88215 * 180.14656 * 4 3 2 6 6 N 1.28463 * 110.23129 * 0.39857 * 4 3 2 7 7 C 1.31808 * 110.07390 * 359.75206 * 6 4 3 8 8 C 1.47710 * 126.51411 * 180.02562 * 7 6 4 9 9 O 1.21573 * 119.99722 * 179.97438 * 8 7 6 10 10 N 1.34770 * 120.00567 * 359.96329 * 8 7 6 11 11 C 1.46505 * 120.00386 * 175.06592 * 10 8 7 12 12 H 1.08995 * 109.46795 * 38.57993 * 11 10 8 13 13 C 1.53001 * 109.47303 * 158.58074 * 11 10 8 14 14 C 1.50696 * 109.47170 * 294.53297 * 13 11 10 15 15 H 1.08002 * 119.99847 * 354.97846 * 14 13 11 16 16 C 1.37877 * 120.00176 * 174.98805 * 14 13 11 17 17 N 1.31516 * 119.99792 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99921 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47271 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46593 * 120.00135 * 18 16 14 21 21 H 1.48497 * 109.47319 * 239.99636 * 18 16 14 22 22 C 1.50696 * 109.46914 * 278.57922 * 11 10 8 23 23 C 1.38239 * 120.00165 * 319.72756 * 22 11 10 24 24 C 1.38229 * 120.00129 * 179.80675 * 23 22 11 25 25 C 1.38243 * 120.00000 * 0.39876 * 24 23 22 26 26 C 1.38231 * 119.99886 * 359.85338 * 25 24 23 27 27 C 1.38238 * 119.99957 * 139.99758 * 22 11 10 28 28 H 1.08990 * 109.47321 * 269.68782 * 1 2 3 29 29 H 1.09001 * 109.47131 * 149.68164 * 1 2 3 30 30 H 1.09005 * 109.47125 * 29.68744 * 1 2 3 31 31 H 1.08000 * 126.38718 * 359.97438 * 3 2 1 32 32 H 1.08995 * 109.47169 * 270.25942 * 5 4 3 33 33 H 1.08999 * 109.46845 * 30.26261 * 5 4 3 34 34 H 1.09000 * 109.47055 * 150.25872 * 5 4 3 35 35 H 0.96999 * 119.99979 * 355.05652 * 10 8 7 36 36 H 1.09003 * 109.47095 * 54.52822 * 13 11 10 37 37 H 1.08998 * 109.47104 * 174.53001 * 13 11 10 38 38 H 0.97001 * 119.99418 * 180.02562 * 17 16 14 39 39 H 1.08001 * 120.00068 * 359.97438 * 23 22 11 40 40 H 1.07998 * 120.00376 * 180.23044 * 24 23 22 41 41 H 1.07995 * 119.99754 * 179.83385 * 25 24 23 42 42 H 1.08002 * 120.00085 * 179.97438 * 26 25 24 43 43 H 1.07994 * 119.99997 * 359.97438 * 27 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0776 0.0000 4 7 3.5950 0.6153 0.0027 5 6 4.7937 1.4576 0.0067 6 7 3.5998 -0.6693 -0.0040 7 6 2.3634 -1.1263 -0.0061 8 6 1.9506 -2.5445 -0.0129 9 8 0.7698 -2.8338 -0.0137 10 7 2.8828 -3.5178 -0.0185 11 6 2.4768 -4.9217 0.0839 12 1 1.5656 -5.0793 -0.4931 13 6 3.5898 -5.8159 -0.4660 14 6 3.7523 -5.5650 -1.9430 15 1 3.0721 -4.9011 -2.4559 16 6 4.7690 -6.1830 -2.6396 17 7 5.5969 -6.9919 -2.0151 18 14 4.9699 -5.8724 -4.4707 19 1 3.9182 -4.9306 -4.9313 20 1 6.3085 -5.2836 -4.7289 21 1 4.8431 -7.1556 -5.2073 22 6 2.2227 -5.2670 1.5286 23 6 3.0611 -4.7794 2.5136 24 6 2.8257 -5.0928 3.8392 25 6 1.7566 -5.9007 4.1791 26 6 0.9213 -6.3926 3.1936 27 6 1.1544 -6.0759 1.8683 28 1 -0.3633 -0.0056 1.0275 29 1 -0.3633 -0.8871 -0.5188 30 1 -0.3633 0.8928 -0.5090 31 1 2.0219 2.1138 -0.0004 32 1 5.0909 1.6715 -1.0199 33 1 4.5793 2.3921 0.5251 34 1 5.6027 0.9359 0.5180 35 1 3.8227 -3.2888 -0.0904 36 1 4.5249 -5.5887 0.0461 37 1 3.3303 -6.8617 -0.3015 38 1 6.3124 -7.4264 -2.5052 39 1 3.8985 -4.1513 2.2478 40 1 3.4785 -4.7088 4.6091 41 1 1.5743 -6.1478 5.2144 42 1 0.0863 -7.0241 3.4591 43 1 0.5018 -6.4601 1.0985 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412198672.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:40 Heat of formation + Delta-G solvation = 59.289787 kcal Electronic energy + Delta-G solvation = -25685.318655 eV Core-core repulsion = 22117.885642 eV Total energy + Delta-G solvation = -3567.433014 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.53577 -39.40476 -38.15720 -35.14629 -33.79992 -32.73510 -31.96202 -30.81901 -30.36277 -28.79916 -28.09077 -26.50261 -24.80605 -22.56254 -22.19627 -21.86037 -20.66841 -19.86377 -19.44135 -17.44570 -16.71402 -16.25728 -16.12839 -16.06686 -15.34240 -14.80258 -14.49382 -14.10575 -14.01632 -13.73903 -13.51299 -13.24463 -12.97260 -12.92851 -12.60503 -12.56810 -12.44316 -12.36084 -12.05733 -11.94357 -11.47684 -11.08563 -10.89015 -10.69057 -10.61628 -10.53704 -10.41603 -9.69383 -9.46279 -9.21375 -9.12710 -8.65537 -8.47355 -8.40534 -8.28839 -8.10816 -6.04027 -4.06534 1.82112 1.85877 1.87719 2.23649 2.50950 3.29818 3.37878 3.43625 3.82847 3.89274 4.30035 4.39263 4.45127 4.76629 4.89035 5.02359 5.16862 5.31870 5.32364 5.34017 5.34818 5.41586 5.51385 5.63514 5.66155 5.91182 5.98655 6.01047 6.08242 6.25292 6.31483 6.42471 6.50397 6.64299 6.65526 6.83208 6.91682 6.92179 7.01500 7.19578 7.47658 7.56396 7.68283 7.93308 7.95525 8.29887 8.34766 8.85628 8.99467 9.58076 11.06633 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.007680 B = 0.005830 C = 0.003877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3645.055688 B = 4801.973366 C = 7219.754987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.148 4.148 3 C -0.031 4.031 4 N -0.289 5.289 5 C 0.089 3.911 6 N -0.257 5.257 7 C -0.007 4.007 8 C 0.599 3.401 9 O -0.541 6.541 10 N -0.686 5.686 11 C 0.184 3.816 12 H 0.087 0.913 13 C 0.023 3.977 14 C -0.517 4.517 15 H 0.059 0.941 16 C 0.060 3.940 17 N -0.893 5.893 18 Si 0.890 3.110 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.284 1.284 22 C -0.071 4.071 23 C -0.106 4.106 24 C -0.126 4.126 25 C -0.135 4.135 26 C -0.124 4.124 27 C -0.107 4.107 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.057 0.943 31 H 0.177 0.823 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.408 0.592 36 H 0.029 0.971 37 H 0.032 0.968 38 H 0.260 0.740 39 H 0.117 0.883 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.116 0.884 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.248 15.262 8.767 18.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.158 4.158 3 C -0.173 4.173 4 N -0.077 5.077 5 C -0.051 4.051 6 N -0.093 5.093 7 C -0.168 4.168 8 C 0.383 3.617 9 O -0.417 6.417 10 N -0.335 5.335 11 C 0.080 3.920 12 H 0.105 0.895 13 C -0.014 4.014 14 C -0.555 4.555 15 H 0.077 0.923 16 C -0.141 4.141 17 N -0.532 5.532 18 Si 0.719 3.281 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.072 4.072 23 C -0.124 4.124 24 C -0.144 4.144 25 C -0.153 4.153 26 C -0.142 4.142 27 C -0.126 4.126 28 H 0.083 0.917 29 H 0.102 0.898 30 H 0.076 0.924 31 H 0.195 0.805 32 H 0.101 0.899 33 H 0.111 0.889 34 H 0.115 0.885 35 H 0.243 0.757 36 H 0.047 0.953 37 H 0.051 0.949 38 H 0.070 0.930 39 H 0.135 0.865 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.134 0.866 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.686 14.657 8.737 17.457 hybrid contribution 0.125 0.634 -1.049 1.233 sum -3.561 15.291 7.687 17.481 Atomic orbital electron populations 1.20146 0.88269 1.02874 1.02142 1.20381 0.97411 0.90561 1.07460 1.22538 0.83866 1.00286 1.10649 1.45249 1.06876 1.03888 1.51644 1.22120 0.85037 0.93635 1.04334 1.73581 1.23414 0.93403 1.18869 1.22068 0.89197 0.95502 1.10014 1.16883 0.85714 0.82463 0.76662 1.90714 1.16972 1.82634 1.51400 1.45853 1.10101 1.05885 1.71658 1.20269 1.01464 0.80360 0.89900 0.89483 1.19398 0.91845 0.94169 0.96000 1.21188 1.13593 1.27403 0.93328 0.92317 1.24975 0.95785 0.95090 0.98282 1.69974 1.17375 1.29878 1.35939 0.86553 0.77915 0.78062 0.85620 1.19727 1.21087 1.20993 1.20545 0.94092 0.95969 0.96619 1.20938 0.99121 0.99893 0.92456 1.21031 0.98009 0.99205 0.96119 1.20983 0.96248 0.99343 0.98740 1.21026 0.99564 1.00478 0.93096 1.21010 0.97203 0.98207 0.96140 0.91718 0.89755 0.92388 0.80533 0.89852 0.88927 0.88521 0.75694 0.95284 0.94941 0.92997 0.86536 0.86836 0.86904 0.86629 0.86126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.00 9.93 36.00 0.36 -0.65 16 2 C -0.15 -2.20 6.25 -104.41 -0.65 -2.85 16 3 C -0.03 -0.36 11.40 -17.16 -0.20 -0.56 16 4 N -0.29 -3.55 3.70 -68.12 -0.25 -3.80 16 5 C 0.09 0.62 11.31 59.85 0.68 1.30 16 6 N -0.26 -4.18 11.68 33.42 0.39 -3.79 16 7 C -0.01 -0.13 7.13 -82.77 -0.59 -0.72 16 8 C 0.60 12.11 7.73 -12.39 -0.10 12.02 16 9 O -0.54 -11.90 14.81 5.30 0.08 -11.83 16 10 N -0.69 -13.97 4.09 -55.92 -0.23 -14.20 16 11 C 0.18 3.96 2.11 -69.08 -0.15 3.82 16 12 H 0.09 2.00 7.49 -51.93 -0.39 1.61 16 13 C 0.02 0.58 4.47 -27.88 -0.12 0.45 16 14 C -0.52 -14.15 8.85 -34.44 -0.30 -14.45 16 15 H 0.06 1.63 7.75 -52.49 -0.41 1.22 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 18 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 19 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 C -0.07 -1.39 4.86 -104.62 -0.51 -1.90 16 23 C -0.11 -1.92 9.32 -39.58 -0.37 -2.29 16 24 C -0.13 -1.98 10.05 -39.58 -0.40 -2.38 16 25 C -0.13 -2.01 10.05 -39.58 -0.40 -2.41 16 26 C -0.12 -1.93 10.05 -39.58 -0.40 -2.32 16 27 C -0.11 -1.93 9.67 -39.58 -0.38 -2.31 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.08 1.31 6.72 -51.93 -0.35 0.96 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.18 1.27 8.06 -52.49 -0.42 0.85 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.35 8.13 -51.93 -0.42 -0.07 16 34 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.41 8.20 8.31 -40.82 -0.34 7.86 16 36 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.12 2.06 7.73 -52.49 -0.41 1.66 16 40 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 41 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 42 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 43 H 0.12 2.06 8.04 -52.49 -0.42 1.63 16 LS Contribution 370.58 15.07 5.58 5.58 Total: -1.00 -33.82 370.58 -8.43 -42.25 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -6.10 Total: 8.19 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: -3.63 Total: -13.67 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: 0.65 Total: -47.14 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.08 Total: -11.83 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.82 -8.43 -42.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412198672.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.542 kcal (2) G-P(sol) polarization free energy of solvation -33.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds