Wall clock time and date at job start Tue Mar 31 2020 10:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.46925 * 2 1 4 4 N 1.31355 * 119.64114 * 269.72881 * 3 2 1 5 5 C 1.33764 * 119.75899 * 179.73627 * 4 3 2 6 6 C 1.40716 * 120.86878 * 180.22740 * 5 4 3 7 7 C 1.35724 * 120.08448 * 180.31606 * 6 5 4 8 8 C 1.40631 * 120.83893 * 359.97438 * 7 6 5 9 9 C 1.47864 * 119.74833 * 179.97438 * 8 7 6 10 10 O 1.21547 * 119.99442 * 180.02562 * 9 8 7 11 11 N 1.34775 * 120.00356 * 0.02575 * 9 8 7 12 12 C 1.46494 * 120.00267 * 180.02562 * 11 9 8 13 13 C 1.50693 * 109.47654 * 179.97438 * 12 11 9 14 14 H 1.08006 * 119.99693 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00550 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99689 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00124 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47127 * 89.99676 * 17 15 13 19 19 H 1.48497 * 109.46745 * 209.99807 * 17 15 13 20 20 H 1.48494 * 109.46940 * 329.99764 * 17 15 13 21 21 C 1.38410 * 120.49339 * 0.02562 * 8 7 6 22 22 C 1.40446 * 119.49546 * 359.97438 * 21 8 7 23 23 N 1.33793 * 120.93118 * 179.97438 * 22 21 8 24 24 C 1.31302 * 119.73355 * 180.02562 * 23 22 21 25 25 C 1.50702 * 119.66248 * 180.02562 * 24 23 22 26 26 C 1.52998 * 109.47156 * 270.02345 * 25 24 23 27 27 H 1.09004 * 109.46930 * 299.99901 * 1 2 3 28 28 H 1.09004 * 109.47059 * 59.99503 * 1 2 3 29 29 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46497 * 240.00263 * 2 1 3 31 31 H 1.09000 * 109.47312 * 120.00043 * 2 1 3 32 32 H 1.08001 * 119.95261 * 0.28676 * 6 5 4 33 33 H 1.07997 * 119.57904 * 180.02562 * 7 6 5 34 34 H 0.97004 * 119.99569 * 359.97438 * 11 9 8 35 35 H 1.09011 * 109.46727 * 299.99620 * 12 11 9 36 36 H 1.09001 * 109.47384 * 59.99092 * 12 11 9 37 37 H 0.97005 * 119.99934 * 179.97438 * 16 15 13 38 38 H 1.07995 * 120.24488 * 180.02562 * 21 8 7 39 39 H 1.09008 * 109.47142 * 30.02041 * 25 24 23 40 40 H 1.09002 * 109.47400 * 150.01574 * 25 24 23 41 41 H 1.09008 * 109.46846 * 299.99877 * 26 25 24 42 42 H 1.08998 * 109.47155 * 59.99515 * 26 25 24 43 43 H 1.08996 * 109.47395 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2539 2.0316 -1.1416 5 6 2.6948 3.2945 -1.1444 6 6 2.9353 3.9726 -2.3537 7 6 3.3886 5.2518 -2.3380 8 6 3.6239 5.9183 -1.1222 9 6 4.1183 7.3118 -1.1332 10 8 4.3237 7.8919 -0.0850 11 7 4.3413 7.9386 -2.3053 12 6 4.8317 9.3190 -2.3161 13 6 4.9972 9.7822 -3.7405 14 1 4.7612 9.1148 -4.5563 15 6 5.4510 11.0575 -4.0025 16 7 5.7389 11.8699 -3.0092 17 14 5.6569 11.6313 -5.7682 18 1 4.3923 12.2524 -6.2375 19 1 6.7546 12.6288 -5.8396 20 1 5.9874 10.4689 -6.6311 21 6 3.3972 5.2793 0.0844 22 6 2.9281 3.9555 0.0884 23 7 2.6997 3.3102 1.2380 24 6 2.2617 2.0727 1.2143 25 6 2.0044 1.3476 2.5101 26 6 3.2774 0.6214 2.9496 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8932 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.7594 3.4742 -3.2956 33 1 3.5701 5.7646 -3.2709 34 1 4.1777 7.4754 -3.1417 35 1 4.1157 9.9629 -1.8052 36 1 5.7930 9.3671 -1.8047 37 1 6.0585 12.7671 -3.1935 38 1 3.5789 5.7950 1.0157 39 1 1.7128 2.0657 3.2766 40 1 1.2031 0.6225 2.3679 41 1 3.5690 -0.0967 2.1831 42 1 4.0786 1.3465 3.0918 43 1 3.0912 0.0966 3.8866 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871595708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:18:28 Heat of formation + Delta-G solvation = -14.793130 kcal Electronic energy + Delta-G solvation = -24567.223318 eV Core-core repulsion = 20996.577828 eV Total energy + Delta-G solvation = -3570.645490 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.73804 -40.92367 -38.69645 -36.44742 -36.25726 -35.54431 -34.39223 -33.35423 -31.39020 -30.97856 -29.26781 -26.87656 -26.14287 -24.95764 -23.61030 -23.35516 -22.83708 -21.84172 -20.07990 -19.42449 -18.42468 -17.82791 -17.40165 -16.72524 -16.61660 -16.27185 -16.20329 -15.64337 -15.41558 -15.18394 -15.00059 -14.79578 -14.48384 -14.18479 -14.08835 -13.95817 -13.74310 -13.58395 -13.05435 -12.94215 -12.81031 -12.72938 -12.60686 -12.49242 -12.40456 -12.24977 -12.22539 -11.92999 -11.90198 -11.51135 -11.10902 -10.82801 -10.20686 -10.08327 -9.86205 -9.70019 -8.30044 -6.46910 -1.09857 -0.72496 0.63510 1.21094 1.43885 1.46339 1.57440 2.12081 2.15133 2.41793 2.79313 2.82630 2.90254 3.05299 3.05348 3.50543 3.57191 3.65818 3.84496 3.90684 4.09544 4.24441 4.32868 4.36637 4.41120 4.44357 4.65098 4.70523 4.81377 4.86429 4.97328 5.00683 5.03108 5.08047 5.11009 5.12785 5.19483 5.19736 5.32969 5.36868 5.41158 5.50720 5.62128 5.80648 6.15043 6.58949 6.61116 6.73895 7.17407 7.32002 8.82202 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.029760 B = 0.002425 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.629117 B =11543.870187 C =12276.775806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.074 4.074 3 C 0.124 3.876 4 N -0.439 5.439 5 C 0.078 3.922 6 C -0.076 4.076 7 C -0.070 4.070 8 C -0.112 4.112 9 C 0.539 3.461 10 O -0.593 6.593 11 N -0.692 5.692 12 C 0.264 3.736 13 C -0.556 4.556 14 H 0.088 0.912 15 C 0.004 3.996 16 N -0.930 5.930 17 Si 0.986 3.014 18 H -0.271 1.271 19 H -0.285 1.285 20 H -0.254 1.254 21 C -0.031 4.031 22 C 0.052 3.948 23 N -0.447 5.447 24 C 0.112 3.888 25 C -0.075 4.075 26 C -0.145 4.145 27 H 0.061 0.939 28 H 0.043 0.957 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.118 0.882 32 H 0.175 0.825 33 H 0.166 0.834 34 H 0.410 0.590 35 H -0.007 1.007 36 H -0.007 1.007 37 H 0.269 0.731 38 H 0.134 0.866 39 H 0.084 0.916 40 H 0.122 0.878 41 H 0.067 0.933 42 H 0.036 0.964 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.637 -30.009 4.494 32.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.034 4.034 4 N -0.153 5.153 5 C -0.044 4.044 6 C -0.095 4.095 7 C -0.090 4.090 8 C -0.117 4.117 9 C 0.327 3.673 10 O -0.475 6.475 11 N -0.342 5.342 12 C 0.142 3.858 13 C -0.594 4.594 14 H 0.106 0.894 15 C -0.196 4.196 16 N -0.569 5.569 17 Si 0.809 3.191 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.177 1.177 21 C -0.051 4.051 22 C -0.070 4.070 23 N -0.161 5.161 24 C -0.046 4.046 25 C -0.113 4.113 26 C -0.203 4.203 27 H 0.080 0.920 28 H 0.062 0.938 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.136 0.864 32 H 0.192 0.808 33 H 0.184 0.816 34 H 0.248 0.752 35 H 0.011 0.989 36 H 0.011 0.989 37 H 0.078 0.922 38 H 0.152 0.848 39 H 0.103 0.897 40 H 0.140 0.860 41 H 0.086 0.914 42 H 0.056 0.944 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.317 -29.140 5.083 31.328 hybrid contribution 0.442 1.300 -0.679 1.532 sum -9.875 -27.840 4.404 29.866 Atomic orbital electron populations 1.21752 0.92569 1.03978 1.01991 1.20812 0.97489 0.86895 1.06061 1.23205 0.92713 0.99391 0.88106 1.68639 1.10126 1.06936 1.29577 1.19885 0.98486 0.91756 0.94319 1.20921 0.97766 0.93475 0.97300 1.21267 0.95823 0.94607 0.97310 1.19933 1.03348 0.93345 0.95082 1.18716 0.78013 0.86595 0.83995 1.90720 1.54865 1.68581 1.33353 1.46102 1.64469 1.15747 1.07878 1.18671 0.92434 0.77340 0.97387 1.21593 1.46353 0.99795 0.91634 0.89446 1.26075 0.94134 0.96429 1.02968 1.70140 1.44562 1.08095 1.34085 0.85137 0.77907 0.78420 0.77650 1.19603 1.21077 1.17729 1.21090 0.93900 0.91722 0.98432 1.19407 1.01931 0.95330 0.90373 1.68508 1.09893 1.09354 1.28307 1.23146 0.92973 0.90066 0.98437 1.20797 1.00900 0.99360 0.90288 1.21749 0.95521 0.99963 1.03029 0.91968 0.93823 0.88903 0.88854 0.86388 0.80758 0.81647 0.75205 0.98937 0.98928 0.92216 0.84834 0.89717 0.85965 0.91422 0.94432 0.88970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.75 71.98 0.70 -0.41 16 2 C -0.07 -0.70 5.53 29.85 0.17 -0.53 16 3 C 0.12 2.32 6.05 42.99 0.26 2.58 16 4 N -0.44 -10.41 10.37 -176.05 -1.83 -12.24 16 5 C 0.08 2.12 6.59 40.34 0.27 2.39 16 6 C -0.08 -1.74 9.95 22.29 0.22 -1.52 16 7 C -0.07 -1.78 9.44 22.27 0.21 -1.57 16 8 C -0.11 -3.79 5.87 -20.10 -0.12 -3.91 16 9 C 0.54 23.41 7.77 86.79 0.67 24.09 16 10 O -0.59 -31.17 16.30 -3.86 -0.06 -31.23 16 11 N -0.69 -29.97 5.50 -469.70 -2.58 -32.55 16 12 C 0.26 14.56 5.43 85.63 0.46 15.03 16 13 C -0.56 -29.96 9.28 25.60 0.24 -29.72 16 14 H 0.09 4.19 7.60 -2.91 -0.02 4.17 16 15 C 0.00 0.20 5.46 84.65 0.46 0.67 16 16 N -0.93 -56.05 13.29 21.45 0.28 -55.77 16 17 Si 0.99 41.98 29.54 68.60 2.03 44.00 16 18 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 19 H -0.29 -12.10 7.11 99.48 0.71 -11.39 16 20 H -0.25 -9.97 7.11 99.48 0.71 -9.27 16 21 C -0.03 -1.05 9.56 22.85 0.22 -0.83 16 22 C 0.05 1.59 6.58 40.27 0.27 1.86 16 23 N -0.45 -12.68 10.37 -176.28 -1.83 -14.51 16 24 C 0.11 2.29 6.05 42.99 0.26 2.55 16 25 C -0.08 -0.88 5.53 29.85 0.17 -0.72 16 26 C -0.14 -1.43 9.75 71.98 0.70 -0.73 16 27 H 0.06 0.44 7.39 -2.38 -0.02 0.42 16 28 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.12 0.47 5.81 -2.39 -0.01 0.45 16 32 H 0.18 2.90 8.06 -2.91 -0.02 2.88 16 33 H 0.17 3.31 6.35 -2.91 -0.02 3.29 16 34 H 0.41 14.25 6.31 -92.71 -0.58 13.67 16 35 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 36 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 37 H 0.27 15.13 8.31 -92.70 -0.77 14.36 16 38 H 0.13 4.95 7.61 -2.91 -0.02 4.93 16 39 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 40 H 0.12 0.63 5.81 -2.39 -0.01 0.61 16 41 H 0.07 0.53 7.39 -2.38 -0.02 0.52 16 42 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 Total: -1.00 -77.73 361.01 1.63 -76.10 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 0.46 Total: 16.97 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 5.16 Total: 9.22 kcal Atomic # 7 Polarization: -109.11 SS G_CDS: -5.95 Total: -115.07 kcal Atomic # 8 Polarization: -31.17 SS G_CDS: -0.06 Total: -31.23 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.00 kcal Total: -77.73 1.63 -76.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871595708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.309 kcal (2) G-P(sol) polarization free energy of solvation -77.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds