Wall clock time and date at job start Tue Mar 31 2020 10:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46854 * 2 1 4 4 N 1.46499 * 109.47024 * 120.00166 * 2 1 3 5 5 C 1.35817 * 126.05187 * 274.99522 * 4 2 1 6 6 C 1.35754 * 107.56082 * 179.73956 * 5 4 2 7 7 N 1.40765 * 126.07679 * 180.02562 * 6 5 4 8 8 C 1.34775 * 119.99662 * 180.02562 * 7 6 5 9 9 O 1.21303 * 120.00118 * 359.97438 * 8 7 6 10 10 C 1.50710 * 119.99736 * 180.02562 * 8 7 6 11 11 C 1.50695 * 109.46858 * 179.97438 * 10 8 7 12 12 C 1.37648 * 120.12865 * 264.99848 * 11 10 8 13 13 C 1.38606 * 120.24670 * 179.97438 * 12 11 10 14 14 C 1.38659 * 120.50800 * 0.02562 * 13 12 11 15 15 C 1.37602 * 120.24386 * 0.02562 * 14 13 12 16 16 C 1.40694 * 120.13014 * 84.72660 * 11 10 8 17 17 C 1.41402 * 120.24195 * 359.97438 * 16 11 10 18 18 H 1.07999 * 119.99744 * 333.90371 * 17 16 11 19 19 C 1.39949 * 119.99998 * 153.89911 * 17 16 11 20 20 N 1.30830 * 119.99967 * 343.71112 * 19 17 16 21 21 Si 1.86793 * 120.00113 * 163.70644 * 19 17 16 22 22 H 1.48500 * 109.47039 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47034 * 120.00013 * 21 19 17 24 24 H 1.48493 * 109.47486 * 240.00338 * 21 19 17 25 25 C 1.40254 * 107.84282 * 0.02562 * 6 5 4 26 26 N 1.30826 * 108.33180 * 0.02562 * 25 6 5 27 27 H 1.09000 * 109.46771 * 299.99838 * 1 2 3 28 28 H 1.08996 * 109.46807 * 60.00229 * 1 2 3 29 29 H 1.08998 * 109.46748 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46771 * 240.00162 * 2 1 3 31 31 H 1.09005 * 109.46671 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47227 * 299.99513 * 3 2 1 33 33 H 1.09000 * 109.47300 * 60.00485 * 3 2 1 34 34 H 1.08003 * 126.21857 * 359.72258 * 5 4 2 35 35 H 0.96998 * 119.99881 * 359.97438 * 7 6 5 36 36 H 1.08995 * 109.46919 * 299.99684 * 10 8 7 37 37 H 1.08996 * 109.46986 * 59.99559 * 10 8 7 38 38 H 1.08001 * 119.87348 * 0.02562 * 12 11 10 39 39 H 1.08003 * 119.74597 * 179.97438 * 13 12 11 40 40 H 1.07999 * 119.87828 * 179.97438 * 14 13 12 41 41 H 1.07991 * 120.12652 * 179.97438 * 15 14 13 42 42 H 0.96998 * 120.00016 * 179.97438 * 20 19 17 43 43 H 1.07992 * 125.83200 * 179.97438 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1947 -0.1361 2.4233 6 6 2.6536 -1.1096 3.2507 7 7 2.9665 -0.9588 4.6148 8 6 3.4160 -2.0132 5.3236 9 8 3.5504 -3.0924 4.7862 10 6 3.7505 -1.8519 6.7842 11 6 4.2264 -3.1696 7.3391 12 6 3.3418 -4.0122 7.9733 13 6 3.7768 -5.2251 8.4841 14 6 5.1052 -5.6039 8.3635 15 6 6.0073 -4.7770 7.7343 16 6 5.5755 -3.5461 7.2058 17 6 6.4920 -2.6916 6.5507 18 1 6.1407 -1.9914 5.8072 19 6 7.8541 -2.7530 6.8659 20 7 8.2455 -3.3491 7.9627 21 14 9.1134 -1.9839 5.7205 22 1 8.4185 -1.3758 4.5575 23 1 9.8693 -0.9338 6.4494 24 1 10.0535 -3.0300 5.2443 25 6 2.7605 -2.2925 2.5046 26 7 2.3819 -2.0409 1.2779 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 2.0045 0.8926 2.6921 35 1 2.8594 -0.0957 5.0444 36 1 4.5362 -1.1049 6.8966 37 1 2.8620 -1.5291 7.3269 38 1 2.3047 -3.7275 8.0726 39 1 3.0759 -5.8798 8.9806 40 1 5.4332 -6.5510 8.7656 41 1 7.0415 -5.0737 7.6417 42 1 9.1897 -3.3920 8.1810 43 1 3.0986 -3.2475 2.8787 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776884711.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:15:32 Heat of formation + Delta-G solvation = 56.629397 kcal Electronic energy + Delta-G solvation = -25262.228099 eV Core-core repulsion = 21694.679722 eV Total energy + Delta-G solvation = -3567.548377 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.19111 -39.12228 -37.32782 -35.87055 -34.00256 -33.58599 -31.72188 -30.09534 -29.43852 -28.82990 -27.64801 -26.58078 -24.95671 -22.97236 -21.80497 -20.89167 -20.28886 -19.98857 -19.04837 -17.45697 -17.11186 -16.26893 -15.64314 -15.40244 -15.31876 -14.75272 -14.52360 -14.36931 -14.06464 -13.58117 -13.41046 -13.19262 -13.02783 -12.84466 -12.55482 -12.51624 -12.39112 -11.75483 -11.70606 -11.53659 -11.50001 -11.20053 -11.06537 -10.95552 -10.65042 -10.61434 -10.35594 -10.33498 -9.45310 -9.33943 -9.23096 -9.14828 -9.11985 -7.45459 -7.27990 -7.26296 -6.70590 -4.31152 1.91704 2.43548 2.81000 2.85976 3.00594 3.10456 3.16390 3.29823 3.59367 3.69037 3.97162 4.29483 4.57156 4.69495 4.74104 4.78512 5.10956 5.14918 5.25786 5.31570 5.40636 5.53018 5.64585 5.79162 5.80076 5.81937 5.88399 6.02677 6.18206 6.31642 6.43112 6.51973 6.54854 6.82901 7.05922 7.12184 7.22002 7.33108 7.45624 7.66955 7.78223 7.93751 7.99301 8.11035 8.16820 8.34804 8.68428 8.81885 8.95129 9.04887 10.23500 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.014752 B = 0.003637 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.538752 B = 7696.593300 C = 9000.220905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.162 3.838 3 C -0.164 4.164 4 N -0.373 5.373 5 C 0.001 3.999 6 C 0.019 3.981 7 N -0.660 5.660 8 C 0.516 3.484 9 O -0.507 6.507 10 C -0.067 4.067 11 C -0.183 4.183 12 C -0.080 4.080 13 C -0.240 4.240 14 C -0.107 4.107 15 C -0.159 4.159 16 C 0.130 3.870 17 C -0.456 4.456 18 H 0.075 0.925 19 C 0.077 3.923 20 N -0.795 5.795 21 Si 0.901 3.099 22 H -0.261 1.261 23 H -0.275 1.275 24 H -0.272 1.272 25 C 0.052 3.948 26 N -0.291 5.291 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.100 0.900 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.170 0.830 35 H 0.405 0.595 36 H 0.099 0.901 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.117 0.883 42 H 0.279 0.721 43 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.618 11.604 -10.435 18.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.060 3.940 3 C -0.222 4.222 4 N -0.160 5.160 5 C -0.146 4.146 6 C -0.086 4.086 7 N -0.306 5.306 8 C 0.305 3.695 9 O -0.380 6.380 10 C -0.106 4.106 11 C -0.184 4.184 12 C -0.098 4.098 13 C -0.259 4.259 14 C -0.125 4.125 15 C -0.178 4.178 16 C 0.127 3.873 17 C -0.485 4.485 18 H 0.093 0.907 19 C -0.140 4.140 20 N -0.421 5.421 21 Si 0.726 3.274 22 H -0.185 1.185 23 H -0.201 1.201 24 H -0.197 1.197 25 C -0.135 4.135 26 N -0.112 5.112 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.118 0.882 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.187 0.813 35 H 0.239 0.761 36 H 0.117 0.883 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.135 0.865 42 H 0.090 0.910 43 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -10.496 10.330 -11.897 18.931 hybrid contribution 0.730 1.183 0.626 1.524 sum -9.766 11.513 -11.271 18.840 Atomic orbital electron populations 1.22250 0.93982 1.03277 1.02780 1.21132 0.94493 0.92582 0.85764 1.22187 1.02446 0.94194 1.03366 1.48477 1.52424 1.07358 1.07702 1.21672 1.07957 0.98904 0.86083 1.17874 1.09851 0.94521 0.86325 1.43199 1.66818 1.13873 1.06720 1.21402 0.75369 0.83021 0.89755 1.90557 1.49934 1.26367 1.71130 1.20239 1.01388 0.99708 0.89312 1.19011 0.95187 0.95672 1.08575 1.20302 0.96392 0.94516 0.98614 1.20305 0.95659 0.98752 1.11170 1.20682 0.93742 0.98062 1.00024 1.21300 0.99048 0.94398 1.03062 1.17337 0.90369 0.90983 0.88594 1.19509 0.91074 1.18314 1.19632 0.90719 1.25870 0.99678 0.94100 0.94354 1.69830 1.17701 1.34331 1.20217 0.86368 0.80355 0.79431 0.81240 1.18514 1.20066 1.19711 1.24605 0.99538 1.00278 0.89126 1.77345 1.20444 0.93055 1.20360 0.91951 0.90739 0.91624 0.88194 0.91431 0.90225 0.91573 0.81313 0.76089 0.88331 0.90341 0.89734 0.89683 0.89605 0.86533 0.91045 0.77673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.20 9.52 37.16 0.35 -0.85 16 2 C 0.16 1.43 3.94 -67.93 -0.27 1.16 16 3 C -0.16 -1.03 8.84 37.16 0.33 -0.70 16 4 N -0.37 -4.83 3.55 -54.52 -0.19 -5.02 16 5 C 0.00 0.01 10.65 -16.68 -0.18 -0.17 16 6 C 0.02 0.30 6.90 -83.88 -0.58 -0.28 16 7 N -0.66 -9.93 5.47 -10.03 -0.05 -9.98 16 8 C 0.52 9.90 7.41 -10.98 -0.08 9.81 16 9 O -0.51 -11.75 13.19 5.54 0.07 -11.67 16 10 C -0.07 -1.26 5.18 -29.03 -0.15 -1.41 16 11 C -0.18 -4.32 4.43 -103.91 -0.46 -4.78 16 12 C -0.08 -1.83 9.66 -39.66 -0.38 -2.21 16 13 C -0.24 -5.57 10.05 -39.29 -0.39 -5.97 16 14 C -0.11 -2.61 10.02 -39.66 -0.40 -3.00 16 15 C -0.16 -4.24 8.69 -38.87 -0.34 -4.58 16 16 C 0.13 3.44 5.56 -106.82 -0.59 2.85 16 17 C -0.46 -11.94 8.14 -37.74 -0.31 -12.25 16 18 H 0.07 1.91 6.67 -52.49 -0.35 1.56 16 19 C 0.08 1.94 5.16 -17.34 -0.09 1.85 16 20 N -0.80 -20.54 10.96 55.55 0.61 -19.93 16 21 Si 0.90 19.06 29.59 -169.99 -5.03 14.03 16 22 H -0.26 -5.59 7.11 56.52 0.40 -5.18 16 23 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 24 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 25 C 0.05 0.93 10.84 -17.22 -0.19 0.74 16 26 N -0.29 -4.84 12.56 30.70 0.39 -4.46 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.37 7.17 -51.93 -0.37 0.00 16 34 H 0.17 1.43 7.28 -52.48 -0.38 1.05 16 35 H 0.40 4.46 8.83 -40.82 -0.36 4.10 16 36 H 0.10 1.82 7.08 -51.93 -0.37 1.46 16 37 H 0.08 1.22 8.05 -51.93 -0.42 0.80 16 38 H 0.08 1.70 8.06 -52.49 -0.42 1.27 16 39 H 0.08 1.76 8.06 -52.48 -0.42 1.33 16 40 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 41 H 0.12 3.21 6.20 -52.49 -0.33 2.88 16 42 H 0.28 6.56 8.30 -40.82 -0.34 6.23 16 43 H 0.21 4.10 5.92 -52.49 -0.31 3.79 16 LS Contribution 360.15 15.07 5.43 5.43 Total: -1.00 -32.30 360.15 -8.33 -40.64 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -5.83 Total: 10.76 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: -3.72 Total: -19.79 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.75 Total: -39.39 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.07 Total: -11.67 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.30 -8.33 -40.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776884711.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.266 kcal (2) G-P(sol) polarization free energy of solvation -32.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds