Wall clock time and date at job start Tue Mar 31 2020 11:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39982 * 120.46270 * 111.65788 * 3 2 1 5 5 C 1.38220 * 118.36920 * 180.02562 * 4 3 2 6 6 C 1.39490 * 119.20733 * 359.97438 * 5 4 3 7 7 C 1.47989 * 119.57066 * 179.97438 * 6 5 4 8 8 O 1.21546 * 119.99904 * 359.97438 * 7 6 5 9 9 N 1.34767 * 120.00161 * 180.02562 * 7 6 5 10 10 C 1.46502 * 120.00118 * 179.97438 * 9 7 6 11 11 H 1.09004 * 109.49702 * 35.06662 * 10 9 7 12 12 C 1.53041 * 109.50092 * 274.99830 * 10 9 7 13 13 C 1.53037 * 109.53933 * 178.68263 * 12 10 9 14 14 C 1.53193 * 109.31342 * 61.36553 * 13 12 10 15 15 N 1.46923 * 108.77618 * 305.36922 * 14 13 12 16 16 C 1.36944 * 120.62736 * 233.60803 * 15 14 13 17 17 H 1.07998 * 119.99878 * 151.57046 * 16 15 14 18 18 C 1.38808 * 119.99865 * 331.56729 * 16 15 14 19 19 N 1.31625 * 119.99610 * 160.52179 * 18 16 15 20 20 Si 1.86795 * 120.00341 * 340.52543 * 18 16 15 21 21 H 1.48498 * 109.47405 * 94.85628 * 20 18 16 22 22 H 1.48506 * 109.47367 * 214.86036 * 20 18 16 23 23 H 1.48498 * 109.46925 * 334.85634 * 20 18 16 24 24 C 1.46918 * 118.74105 * 53.60197 * 15 14 13 25 25 H 1.08998 * 109.58808 * 66.18567 * 24 15 14 26 26 C 1.53002 * 109.58704 * 186.60460 * 24 15 14 27 27 N 1.32820 * 120.85761 * 359.97438 * 6 5 4 28 28 C 1.31294 * 121.79205 * 0.04509 * 27 6 5 29 29 H 4.52938 * 13.94587 * 0.02562 * 4 2 1 30 30 H 1.08003 * 120.81438 * 359.97438 * 4 3 2 31 31 H 1.08004 * 120.39228 * 179.72530 * 5 4 3 32 32 H 0.97002 * 120.00147 * 0.02562 * 9 7 6 33 33 H 1.08998 * 109.45753 * 298.70599 * 12 10 9 34 34 H 1.09005 * 109.45747 * 58.66539 * 12 10 9 35 35 H 1.08998 * 109.50119 * 181.31949 * 13 12 10 36 36 H 1.09006 * 109.49936 * 301.42023 * 13 12 10 37 37 H 1.08997 * 109.58342 * 65.15117 * 14 13 12 38 38 H 1.09002 * 109.58637 * 185.58082 * 14 13 12 39 39 H 0.97002 * 119.99755 * 180.02562 * 19 18 16 40 40 H 1.09001 * 109.47302 * 179.29136 * 26 24 15 41 41 H 1.08998 * 109.47433 * 299.28971 * 26 24 15 42 42 H 1.09001 * 109.46939 * 59.29495 * 26 24 15 43 43 H 1.07999 * 119.64974 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3155 0.4463 -1.1214 5 6 4.6968 0.4277 -1.0747 6 6 5.3327 -0.0302 0.0793 7 6 6.8112 -0.0540 0.1378 8 8 7.4633 0.3235 -0.8159 9 7 7.4346 -0.4952 1.2482 10 6 8.8983 -0.5193 1.3059 11 1 9.2982 0.3333 0.7570 12 6 9.4130 -1.8172 0.6792 13 6 10.9431 -1.8285 0.7093 14 6 11.4216 -1.7709 2.1634 15 7 10.8138 -0.6029 2.8154 16 6 11.5935 0.3229 3.4560 17 1 11.2655 1.3495 3.5260 18 6 12.8053 -0.0582 4.0154 19 7 13.7206 0.8489 4.2834 20 14 13.1372 -1.8584 4.3878 21 1 13.8699 -2.4721 3.2513 22 1 13.9571 -1.9658 5.6213 23 1 11.8482 -2.5684 4.5869 24 6 9.3537 -0.4469 2.7668 25 1 8.8816 -1.2470 3.3368 26 6 8.9627 0.9085 3.3593 27 7 4.6285 -0.4451 1.1262 28 6 3.3156 -0.4435 1.1212 29 1 -1.0500 0.0003 0.0005 30 1 2.7963 0.7952 -2.0018 31 1 5.2767 0.7601 -1.9231 32 1 6.9143 -0.7975 2.0089 33 1 9.0323 -2.6687 1.2432 34 1 9.0697 -1.8829 -0.3533 35 1 11.3094 -2.7424 0.2417 36 1 11.3241 -0.9635 0.1664 37 1 11.1181 -2.6790 2.6842 38 1 12.5075 -1.6788 2.1874 39 1 14.5677 0.5825 4.6740 40 1 7.8803 1.0276 3.3109 41 1 9.2874 0.9580 4.3986 42 1 9.4417 1.7055 2.7906 43 1 2.7776 -0.7890 1.9916 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994261198.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:38 Heat of formation + Delta-G solvation = 58.591445 kcal Electronic energy + Delta-G solvation = -25423.393376 eV Core-core repulsion = 21855.930080 eV Total energy + Delta-G solvation = -3567.463296 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.80564 -40.61393 -39.27542 -36.04905 -35.38127 -34.41150 -33.54905 -33.28176 -32.13645 -31.15322 -28.10255 -26.81189 -26.19552 -24.69616 -24.10792 -22.42235 -21.81948 -21.32312 -20.10038 -19.18244 -18.40349 -17.95057 -17.33017 -16.69080 -16.57201 -16.37873 -16.15245 -16.00102 -15.28645 -15.27949 -15.15481 -14.90372 -14.61890 -14.34661 -14.23218 -13.68182 -13.57740 -13.48197 -12.96467 -12.93606 -12.61896 -12.58043 -12.45554 -12.06157 -11.94720 -11.88337 -11.65066 -11.50203 -11.34716 -11.25557 -10.92872 -10.73750 -10.59791 -10.15370 -9.81732 -8.91407 -8.11310 -5.45858 -0.76752 0.12516 1.33505 1.39517 1.44107 1.53131 1.71361 1.96500 2.21238 2.45843 2.91008 2.94305 3.09557 3.25710 3.33174 3.69670 3.76120 3.83724 3.92906 3.93923 4.06226 4.14832 4.21677 4.36629 4.49360 4.64620 4.65650 4.66373 4.76124 4.85467 4.89427 4.91748 5.00645 5.02306 5.09817 5.13295 5.20842 5.32582 5.40222 5.45026 5.55332 5.91111 6.20352 6.34546 6.51734 6.69676 6.92357 7.11590 7.64914 8.03648 9.07819 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.029151 B = 0.002835 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.297350 B = 9874.653671 C =10121.225172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.209 4.209 3 C -0.014 4.014 4 C -0.057 4.057 5 C -0.110 4.110 6 C 0.066 3.934 7 C 0.567 3.433 8 O -0.568 6.568 9 N -0.688 5.688 10 C 0.141 3.859 11 H 0.061 0.939 12 C -0.111 4.111 13 C -0.125 4.125 14 C 0.117 3.883 15 N -0.612 5.612 16 C -0.240 4.240 17 H 0.063 0.937 18 C -0.037 4.037 19 N -0.959 5.959 20 Si 0.945 3.055 21 H -0.279 1.279 22 H -0.315 1.315 23 H -0.254 1.254 24 C 0.169 3.831 25 H 0.055 0.945 26 C -0.129 4.129 27 N -0.464 5.464 28 C 0.119 3.881 29 H 0.264 0.736 30 H 0.172 0.828 31 H 0.155 0.845 32 H 0.417 0.583 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.087 0.913 36 H 0.049 0.951 37 H 0.042 0.958 38 H 0.051 0.949 39 H 0.260 0.740 40 H 0.074 0.926 41 H 0.051 0.949 42 H 0.034 0.966 43 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.368 -5.892 -9.664 30.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.209 4.209 3 C -0.016 4.016 4 C -0.082 4.082 5 C -0.131 4.131 6 C -0.070 4.070 7 C 0.352 3.648 8 O -0.447 6.447 9 N -0.338 5.338 10 C 0.035 3.965 11 H 0.079 0.921 12 C -0.150 4.150 13 C -0.164 4.164 14 C -0.008 4.008 15 N -0.337 5.337 16 C -0.370 4.370 17 H 0.080 0.920 18 C -0.231 4.231 19 N -0.606 5.606 20 Si 0.774 3.226 21 H -0.206 1.206 22 H -0.244 1.244 23 H -0.178 1.178 24 C 0.063 3.937 25 H 0.072 0.928 26 C -0.186 4.186 27 N -0.175 5.175 28 C -0.042 4.042 29 H 0.280 0.720 30 H 0.190 0.810 31 H 0.173 0.827 32 H 0.255 0.745 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.106 0.894 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.092 0.908 41 H 0.070 0.930 42 H 0.053 0.947 43 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -27.230 -5.881 -9.515 29.438 hybrid contribution 0.296 -0.176 0.009 0.345 sum -26.933 -6.058 -9.506 29.197 Atomic orbital electron populations 1.25891 0.96451 0.94975 0.95617 1.19796 0.91819 1.04655 1.04675 1.17328 0.89024 0.99635 0.95616 1.21953 0.92625 0.95009 0.98603 1.22152 0.95380 0.97109 0.98472 1.21064 0.93171 1.00475 0.92317 1.18165 0.86672 0.77176 0.82762 1.90782 1.66886 1.49697 1.37292 1.45766 1.07042 1.63593 1.17400 1.21423 0.78666 0.98457 0.98001 0.92090 1.21721 0.95374 0.97179 1.00719 1.21909 0.95607 1.02128 0.96804 1.21491 0.96869 0.89519 0.92890 1.44483 1.01658 1.25725 1.61825 1.18846 1.00019 0.90299 1.27824 0.91980 1.25907 0.96758 1.00969 0.99500 1.69964 1.06598 1.35239 1.48777 0.85924 0.77990 0.82485 0.76169 1.20580 1.24436 1.17824 1.20744 0.83445 0.97307 0.92248 0.92771 1.21736 1.00245 0.95997 1.00658 1.67520 1.09319 1.13547 1.27087 1.23368 0.88356 0.94612 0.97910 0.72034 0.81030 0.82726 0.74492 0.90552 0.91963 0.89423 0.93241 0.94022 0.93128 0.93131 0.90764 0.93030 0.94672 0.79253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 19.25 74.32 1.43 0.63 16 2 C -0.21 -2.62 13.28 30.02 0.40 -2.22 16 3 C -0.01 -0.21 5.75 -21.20 -0.12 -0.33 16 4 C -0.06 -0.84 9.89 22.69 0.22 -0.61 16 5 C -0.11 -2.18 9.61 22.57 0.22 -1.96 16 6 C 0.07 1.61 6.75 41.88 0.28 1.89 16 7 C 0.57 17.07 7.77 86.83 0.67 17.74 16 8 O -0.57 -20.72 15.97 -3.86 -0.06 -20.78 16 9 N -0.69 -19.78 4.56 -444.89 -2.03 -21.81 16 10 C 0.14 4.84 1.99 45.07 0.09 4.93 16 11 H 0.06 2.51 7.58 -2.38 -0.02 2.49 16 12 C -0.11 -3.54 5.46 30.62 0.17 -3.37 16 13 C -0.12 -4.37 6.08 30.67 0.19 -4.18 16 14 C 0.12 4.91 4.19 86.36 0.36 5.27 16 15 N -0.61 -28.44 2.76 -675.25 -1.86 -30.30 16 16 C -0.24 -13.46 9.07 84.03 0.76 -12.69 16 17 H 0.06 3.78 6.36 -2.91 -0.02 3.76 16 18 C -0.04 -2.17 5.24 84.86 0.44 -1.72 16 19 N -0.96 -60.74 13.97 21.65 0.30 -60.43 16 20 Si 0.95 46.46 24.35 68.60 1.67 48.13 16 21 H -0.28 -13.09 6.72 99.48 0.67 -12.43 16 22 H -0.32 -15.90 7.11 99.48 0.71 -15.20 16 23 H -0.25 -11.70 6.44 99.48 0.64 -11.06 16 24 C 0.17 6.39 3.03 44.98 0.14 6.52 16 25 H 0.05 1.89 8.14 -2.39 -0.02 1.88 16 26 C -0.13 -4.83 7.83 71.98 0.56 -4.26 16 27 N -0.46 -9.93 9.51 -183.94 -1.75 -11.68 16 28 C 0.12 1.94 10.92 85.18 0.93 2.87 16 29 H 0.26 -0.51 7.80 -4.42 -0.03 -0.54 16 30 H 0.17 1.52 8.06 -2.91 -0.02 1.49 16 31 H 0.16 2.98 7.63 -2.91 -0.02 2.95 16 32 H 0.42 10.37 7.92 -92.71 -0.73 9.64 16 33 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 35 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 37 H 0.04 1.65 6.95 -2.39 -0.02 1.63 16 38 H 0.05 2.36 4.61 -2.39 -0.01 2.35 16 39 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 40 H 0.07 2.26 7.78 -2.39 -0.02 2.24 16 41 H 0.05 2.07 7.65 -2.39 -0.02 2.05 16 42 H 0.03 1.46 7.41 -2.39 -0.02 1.44 16 43 H 0.19 2.04 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -73.46 354.33 3.21 -70.25 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: 0.19 Total: 18.13 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: 6.75 Total: 8.51 kcal Atomic # 7 Polarization: -118.89 SS G_CDS: -5.34 Total: -124.23 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.06 Total: -20.78 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 1.67 Total: 48.13 kcal Total: -73.46 3.21 -70.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994261198.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.839 kcal (2) G-P(sol) polarization free energy of solvation -73.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds