Wall clock time and date at job start Tue Mar 31 2020 10:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47247 * 2 1 4 4 N 1.40077 * 126.03494 * 269.96976 * 3 2 1 5 5 C 1.30845 * 108.20428 * 180.02562 * 4 3 2 6 6 C 1.39872 * 108.20175 * 359.78206 * 5 4 3 7 7 C 1.34947 * 126.03538 * 89.99576 * 3 2 1 8 8 C 1.50696 * 126.12846 * 359.94539 * 7 3 2 9 9 N 1.46507 * 109.47121 * 274.99750 * 8 7 3 10 10 C 1.34773 * 120.00266 * 180.02562 * 9 8 7 11 11 O 1.21282 * 119.99503 * 359.97438 * 10 9 8 12 12 C 1.50694 * 120.00092 * 180.02562 * 10 9 8 13 13 C 1.50707 * 109.47262 * 179.97438 * 12 10 9 14 14 C 1.37643 * 120.12639 * 265.30991 * 13 12 10 15 15 C 1.38615 * 120.24281 * 180.31829 * 14 13 12 16 16 C 1.38658 * 120.50051 * 359.66907 * 15 14 13 17 17 C 1.37593 * 120.25264 * 0.02562 * 16 15 14 18 18 C 1.40688 * 120.12508 * 84.99750 * 13 12 10 19 19 C 1.41401 * 120.24844 * 359.97438 * 18 13 12 20 20 H 1.07999 * 119.99289 * 334.28466 * 19 18 13 21 21 C 1.39937 * 120.00394 * 154.28925 * 19 18 13 22 22 N 1.30829 * 120.00181 * 334.60180 * 21 19 18 23 23 Si 1.86801 * 120.00083 * 154.60226 * 21 19 18 24 24 H 1.48505 * 109.47160 * 179.97438 * 23 21 19 25 25 H 1.48495 * 109.47100 * 300.00105 * 23 21 19 26 26 H 1.48502 * 109.47051 * 60.00179 * 23 21 19 27 27 H 1.08997 * 109.47056 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47592 * 300.00527 * 1 2 3 29 29 H 1.09003 * 109.46793 * 60.00655 * 1 2 3 30 30 H 1.09000 * 109.47592 * 239.99473 * 2 1 3 31 31 H 1.09003 * 109.46580 * 119.99855 * 2 1 3 32 32 H 1.08001 * 125.89855 * 180.02562 * 5 4 3 33 33 H 1.07995 * 126.03991 * 180.22726 * 6 5 4 34 34 H 1.09001 * 109.47130 * 155.00211 * 8 7 3 35 35 H 1.08991 * 109.47325 * 35.00056 * 8 7 3 36 36 H 0.97000 * 119.99705 * 0.02562 * 9 8 7 37 37 H 1.09001 * 109.46892 * 59.99768 * 12 10 9 38 38 H 1.08991 * 109.47294 * 299.99778 * 12 10 9 39 39 H 1.07998 * 119.87840 * 0.02562 * 14 13 12 40 40 H 1.07996 * 119.74749 * 179.68975 * 15 14 13 41 41 H 1.08000 * 119.87393 * 180.02562 * 16 15 14 42 42 H 1.07996 * 120.12941 * 180.02562 * 17 16 15 43 43 H 0.96998 * 119.99709 * 354.17607 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2936 2.1579 -1.1327 5 6 2.7092 3.3322 -0.7321 6 6 2.7071 3.3425 0.6666 7 6 2.2829 2.1297 1.0913 8 6 2.1278 1.6949 2.5258 9 7 0.7424 1.9058 2.9529 10 6 0.3681 1.5867 4.2077 11 8 1.1781 1.1246 4.9831 12 6 -1.0572 1.8031 4.6469 13 6 -1.2123 1.3684 6.0815 14 6 -1.6553 0.0986 6.3746 15 6 -1.8051 -0.3015 7.6933 16 6 -1.5049 0.5678 8.7309 17 6 -1.0546 1.8397 8.4614 18 6 -0.8986 2.2569 7.1263 19 6 -0.4359 3.5614 6.8373 20 1 0.0667 3.7612 5.9025 21 6 -0.6289 4.5933 7.7625 22 7 -1.6143 4.5269 8.6205 23 14 0.5204 6.0659 7.7725 24 1 0.1042 7.0115 8.8393 25 1 1.9092 5.6081 8.0304 26 1 0.4609 6.7492 6.4554 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8900 32 1 2.9995 4.1531 -1.3710 33 1 2.9952 4.1712 1.2963 34 1 2.7958 2.2808 3.1572 35 1 2.3785 0.6379 2.6142 36 1 0.0945 2.2750 2.3326 37 1 -1.7248 1.2166 4.0157 38 1 -1.3083 2.8599 4.5579 39 1 -1.8915 -0.5869 5.5742 40 1 -2.1580 -1.2980 7.9141 41 1 -1.6250 0.2454 9.7547 42 1 -0.8209 2.5151 9.2712 43 1 -2.2608 3.8061 8.5616 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000856478407.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:22 Heat of formation + Delta-G solvation = 46.641693 kcal Electronic energy + Delta-G solvation = -25445.773581 eV Core-core repulsion = 21877.792104 eV Total energy + Delta-G solvation = -3567.981476 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.48677 -39.27538 -37.55331 -34.99218 -34.38229 -33.83980 -31.96017 -30.82388 -29.55637 -29.20800 -27.41918 -25.62384 -24.72556 -24.01073 -21.27664 -20.94312 -20.77427 -19.96345 -19.48920 -17.78634 -17.25923 -16.21422 -15.95123 -15.39091 -15.05899 -14.93948 -14.72126 -14.28526 -14.16246 -14.06988 -13.70872 -13.45799 -13.17465 -12.81227 -12.77730 -12.41872 -12.30061 -12.12839 -12.00975 -11.74042 -11.59253 -11.21574 -11.15505 -10.84410 -10.80621 -10.46154 -10.37839 -9.69546 -9.65247 -9.37568 -9.25181 -8.95152 -8.88328 -8.71556 -7.55245 -7.49968 -7.11401 -4.41285 1.55720 2.27429 2.61042 2.77935 2.86404 3.17055 3.22126 3.30182 3.38687 3.67180 4.03723 4.27995 4.30444 4.60266 4.69766 4.81492 4.89248 5.01838 5.24010 5.35179 5.38685 5.55400 5.59162 5.61074 5.70014 5.78367 5.90480 6.00306 6.03971 6.16684 6.32098 6.36198 6.47790 6.56757 6.68841 6.79625 7.00729 7.21511 7.42670 7.52321 7.66361 7.80515 7.83900 7.87084 7.96218 8.21860 8.35424 8.72529 8.79744 8.93667 10.08393 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.013851 B = 0.003897 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.022358 B = 7182.384462 C = 8786.200961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.126 3.874 3 N -0.361 5.361 4 N -0.294 5.294 5 C 0.043 3.957 6 C -0.253 4.253 7 C 0.069 3.931 8 C 0.186 3.814 9 N -0.741 5.741 10 C 0.517 3.483 11 O -0.517 6.517 12 C -0.068 4.068 13 C -0.186 4.186 14 C -0.068 4.068 15 C -0.254 4.254 16 C -0.086 4.086 17 C -0.216 4.216 18 C 0.117 3.883 19 C -0.516 4.516 20 H 0.072 0.928 21 C 0.041 3.959 22 N -0.798 5.798 23 Si 1.060 2.940 24 H -0.274 1.274 25 H -0.275 1.275 26 H -0.276 1.276 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.184 0.816 33 H 0.150 0.850 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.397 0.603 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.104 0.896 43 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.139 -2.932 -15.691 16.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.004 3.996 3 N -0.145 5.145 4 N -0.116 5.116 5 C -0.142 4.142 6 C -0.283 4.283 7 C -0.059 4.059 8 C 0.060 3.940 9 N -0.397 5.397 10 C 0.305 3.695 11 O -0.391 6.391 12 C -0.108 4.108 13 C -0.188 4.188 14 C -0.087 4.087 15 C -0.273 4.273 16 C -0.104 4.104 17 C -0.235 4.235 18 C 0.114 3.886 19 C -0.544 4.544 20 H 0.091 0.909 21 C -0.181 4.181 22 N -0.421 5.421 23 Si 0.884 3.116 24 H -0.199 1.199 25 H -0.200 1.200 26 H -0.202 1.202 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.200 0.800 33 H 0.168 0.832 34 H 0.110 0.890 35 H 0.092 0.908 36 H 0.231 0.769 37 H 0.093 0.907 38 H 0.115 0.885 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.122 0.878 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.724 -2.760 -15.258 16.210 hybrid contribution -0.379 -0.808 -0.463 1.006 sum 4.345 -3.568 -15.722 16.697 Atomic orbital electron populations 1.22199 0.93960 1.03374 1.03321 1.21710 0.95575 0.77876 1.04392 1.48745 1.50536 1.12026 1.03174 1.77349 1.21679 1.04436 1.08086 1.23850 0.99576 0.95799 0.95022 1.21379 1.13571 0.98232 0.95119 1.21113 1.01754 0.92798 0.90199 1.19655 0.85783 1.01579 0.86948 1.46210 1.10345 1.68598 1.14585 1.21273 0.91698 0.76549 0.80014 1.90699 1.53782 1.42599 1.51986 1.20235 0.91230 1.03317 0.96008 1.18987 1.11834 0.96093 0.91869 1.20344 0.98654 0.94451 0.95221 1.20255 1.15057 0.99063 0.92927 1.20606 0.98753 0.94345 0.96740 1.21144 1.09600 0.96213 0.96553 1.17387 0.87949 0.92641 0.90641 1.20447 1.34551 0.93932 1.05512 0.90948 1.26929 0.97361 1.02474 0.91352 1.70454 1.08172 1.32051 1.31470 0.83714 0.75976 0.74556 0.77387 1.19895 1.20019 1.20195 0.90364 0.91626 0.91647 0.88731 0.88840 0.79953 0.83223 0.88980 0.90826 0.76898 0.90666 0.88542 0.89676 0.89484 0.89395 0.87751 0.88732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 10.24 37.16 0.38 -0.99 16 2 C 0.13 1.09 6.96 -4.04 -0.03 1.06 16 3 N -0.36 -4.05 3.61 -57.14 -0.21 -4.25 16 4 N -0.29 -3.60 12.58 30.63 0.39 -3.21 16 5 C 0.04 0.45 12.03 -17.36 -0.21 0.24 16 6 C -0.25 -2.80 10.72 -40.01 -0.43 -3.23 16 7 C 0.07 0.80 6.30 -82.26 -0.52 0.28 16 8 C 0.19 2.34 5.84 -5.19 -0.03 2.31 16 9 N -0.74 -10.19 5.44 -61.48 -0.33 -10.53 16 10 C 0.52 9.55 7.46 -10.99 -0.08 9.47 16 11 O -0.52 -11.90 16.03 5.56 0.09 -11.81 16 12 C -0.07 -1.29 5.18 -29.03 -0.15 -1.44 16 13 C -0.19 -4.36 4.43 -103.91 -0.46 -4.82 16 14 C -0.07 -1.54 9.66 -39.66 -0.38 -1.92 16 15 C -0.25 -5.77 10.05 -39.29 -0.39 -6.17 16 16 C -0.09 -2.05 10.02 -39.66 -0.40 -2.45 16 17 C -0.22 -5.63 7.95 -38.87 -0.31 -5.94 16 18 C 0.12 3.05 5.30 -106.82 -0.57 2.49 16 19 C -0.52 -13.41 8.08 -37.74 -0.30 -13.71 16 20 H 0.07 1.84 6.73 -52.49 -0.35 1.49 16 21 C 0.04 1.02 4.94 -17.34 -0.09 0.94 16 22 N -0.80 -20.99 12.31 55.55 0.68 -20.31 16 23 Si 1.06 21.74 30.00 -169.99 -5.10 16.64 16 24 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 25 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 26 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 27 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.59 7.75 -51.93 -0.40 0.19 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 0.74 7.15 -51.93 -0.37 0.37 16 32 H 0.18 1.33 8.06 -52.49 -0.42 0.91 16 33 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 34 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.07 0.92 7.24 -51.93 -0.38 0.54 16 36 H 0.40 4.66 8.18 -40.82 -0.33 4.33 16 37 H 0.08 1.18 8.05 -51.93 -0.42 0.76 16 38 H 0.10 1.82 7.06 -51.93 -0.37 1.46 16 39 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 40 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 41 H 0.09 1.87 8.06 -52.49 -0.42 1.44 16 42 H 0.10 2.81 6.49 -52.49 -0.34 2.47 16 43 H 0.30 8.06 6.68 -40.82 -0.27 7.78 16 LS Contribution 364.65 15.07 5.50 5.50 Total: -1.00 -31.67 364.65 -8.79 -40.46 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -5.84 Total: 11.41 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: -3.97 Total: -23.89 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.53 Total: -38.30 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.09 Total: -11.81 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.10 Total: 16.64 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.67 -8.79 -40.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856478407.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.101 kcal (2) G-P(sol) polarization free energy of solvation -31.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds