Wall clock time and date at job start Tue Mar 31 2020 10:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47247 * 2 1 4 4 N 1.40077 * 126.03494 * 269.96976 * 3 2 1 5 5 C 1.30845 * 108.20428 * 180.02562 * 4 3 2 6 6 C 1.39872 * 108.20175 * 359.78206 * 5 4 3 7 7 C 1.34947 * 126.03538 * 89.99576 * 3 2 1 8 8 C 1.50696 * 126.12846 * 359.94539 * 7 3 2 9 9 N 1.46507 * 109.47121 * 274.99750 * 8 7 3 10 10 C 1.34773 * 120.00266 * 180.02562 * 9 8 7 11 11 O 1.21282 * 119.99503 * 359.97438 * 10 9 8 12 12 C 1.50694 * 120.00092 * 180.02562 * 10 9 8 13 13 C 1.50707 * 109.47262 * 179.97438 * 12 10 9 14 14 C 1.37643 * 120.12639 * 265.30991 * 13 12 10 15 15 C 1.38615 * 120.24281 * 180.31829 * 14 13 12 16 16 C 1.38658 * 120.50051 * 359.66907 * 15 14 13 17 17 C 1.37593 * 120.25264 * 0.02562 * 16 15 14 18 18 C 1.40688 * 120.12508 * 84.99750 * 13 12 10 19 19 C 1.41401 * 120.24844 * 359.97438 * 18 13 12 20 20 H 1.07999 * 119.99289 * 334.28466 * 19 18 13 21 21 C 1.39937 * 120.00394 * 154.28925 * 19 18 13 22 22 N 1.30829 * 120.00181 * 334.60180 * 21 19 18 23 23 Si 1.86801 * 120.00083 * 154.60226 * 21 19 18 24 24 H 1.48505 * 109.47160 * 179.97438 * 23 21 19 25 25 H 1.48495 * 109.47100 * 300.00105 * 23 21 19 26 26 H 1.48502 * 109.47051 * 60.00179 * 23 21 19 27 27 H 1.08997 * 109.47056 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47592 * 300.00527 * 1 2 3 29 29 H 1.09003 * 109.46793 * 60.00655 * 1 2 3 30 30 H 1.09000 * 109.47592 * 239.99473 * 2 1 3 31 31 H 1.09003 * 109.46580 * 119.99855 * 2 1 3 32 32 H 1.08001 * 125.89855 * 180.02562 * 5 4 3 33 33 H 1.07995 * 126.03991 * 180.22726 * 6 5 4 34 34 H 1.09001 * 109.47130 * 155.00211 * 8 7 3 35 35 H 1.08991 * 109.47325 * 35.00056 * 8 7 3 36 36 H 0.97000 * 119.99705 * 0.02562 * 9 8 7 37 37 H 1.09001 * 109.46892 * 59.99768 * 12 10 9 38 38 H 1.08991 * 109.47294 * 299.99778 * 12 10 9 39 39 H 1.07998 * 119.87840 * 0.02562 * 14 13 12 40 40 H 1.07996 * 119.74749 * 179.68975 * 15 14 13 41 41 H 1.08000 * 119.87393 * 180.02562 * 16 15 14 42 42 H 1.07996 * 120.12941 * 180.02562 * 17 16 15 43 43 H 0.96998 * 119.99709 * 354.17607 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2936 2.1579 -1.1327 5 6 2.7092 3.3322 -0.7321 6 6 2.7071 3.3425 0.6666 7 6 2.2829 2.1297 1.0913 8 6 2.1278 1.6949 2.5258 9 7 0.7424 1.9058 2.9529 10 6 0.3681 1.5867 4.2077 11 8 1.1781 1.1246 4.9831 12 6 -1.0572 1.8031 4.6469 13 6 -1.2123 1.3684 6.0815 14 6 -1.6553 0.0986 6.3746 15 6 -1.8051 -0.3015 7.6933 16 6 -1.5049 0.5678 8.7309 17 6 -1.0546 1.8397 8.4614 18 6 -0.8986 2.2569 7.1263 19 6 -0.4359 3.5614 6.8373 20 1 0.0667 3.7612 5.9025 21 6 -0.6289 4.5933 7.7625 22 7 -1.6143 4.5269 8.6205 23 14 0.5204 6.0659 7.7725 24 1 0.1042 7.0115 8.8393 25 1 1.9092 5.6081 8.0304 26 1 0.4609 6.7492 6.4554 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8900 32 1 2.9995 4.1531 -1.3710 33 1 2.9952 4.1712 1.2963 34 1 2.7958 2.2808 3.1572 35 1 2.3785 0.6379 2.6142 36 1 0.0945 2.2750 2.3326 37 1 -1.7248 1.2166 4.0157 38 1 -1.3083 2.8599 4.5579 39 1 -1.8915 -0.5869 5.5742 40 1 -2.1580 -1.2980 7.9141 41 1 -1.6250 0.2454 9.7547 42 1 -0.8209 2.5151 9.2712 43 1 -2.2608 3.8061 8.5616 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000856478407.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:22 Heat of formation + Delta-G solvation = 27.995659 kcal Electronic energy + Delta-G solvation = -25446.582133 eV Core-core repulsion = 21877.792104 eV Total energy + Delta-G solvation = -3568.790029 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.34193 -40.78510 -39.30341 -36.10008 -35.71261 -35.27480 -33.60431 -31.91727 -31.07898 -30.31618 -28.89655 -27.10990 -26.34938 -24.71731 -22.80806 -22.37133 -22.09645 -21.23650 -20.65809 -19.59608 -18.36045 -17.52818 -17.05721 -16.80652 -16.61309 -16.01184 -15.97861 -15.70528 -15.54261 -15.29990 -15.03286 -14.64799 -14.37270 -14.15745 -13.96449 -13.82761 -13.55062 -13.44799 -13.26404 -12.96031 -12.91508 -12.70170 -12.57573 -12.26004 -12.21876 -11.97000 -11.65577 -11.47002 -11.19526 -10.99066 -10.81349 -10.34411 -10.14952 -9.58905 -9.41961 -9.40160 -9.03179 -6.37162 0.65101 0.95222 1.01434 1.49644 1.50193 1.64605 1.76479 1.78345 1.79027 2.33561 2.44146 2.74792 3.36972 3.58343 3.60901 3.98143 4.05797 4.07520 4.15498 4.28085 4.31990 4.35044 4.50392 4.56787 4.60223 4.64016 4.70370 4.73610 4.80462 4.88689 4.99706 5.10059 5.14638 5.16353 5.33944 5.36905 5.52473 5.69885 5.81888 5.86903 5.98307 6.01091 6.07718 6.31918 6.46991 6.54708 6.69175 6.88718 7.04916 7.33936 8.11182 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.013851 B = 0.003897 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.022358 B = 7182.384462 C = 8786.200961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.118 3.882 3 N -0.363 5.363 4 N -0.317 5.317 5 C 0.043 3.957 6 C -0.259 4.259 7 C 0.062 3.938 8 C 0.191 3.809 9 N -0.718 5.718 10 C 0.524 3.476 11 O -0.569 6.569 12 C -0.068 4.068 13 C -0.189 4.189 14 C -0.079 4.079 15 C -0.251 4.251 16 C -0.098 4.098 17 C -0.246 4.246 18 C 0.087 3.913 19 C -0.540 4.540 20 H 0.070 0.930 21 C 0.005 3.995 22 N -0.821 5.821 23 Si 1.106 2.894 24 H -0.272 1.272 25 H -0.274 1.274 26 H -0.252 1.252 27 H 0.096 0.904 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.212 0.788 33 H 0.159 0.841 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.410 0.590 37 H 0.114 0.886 38 H 0.094 0.906 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.107 0.893 42 H 0.082 0.918 43 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.260 -3.461 -17.881 18.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.003 4.003 3 N -0.146 5.146 4 N -0.139 5.139 5 C -0.141 4.141 6 C -0.289 4.289 7 C -0.066 4.066 8 C 0.066 3.934 9 N -0.373 5.373 10 C 0.312 3.688 11 O -0.446 6.446 12 C -0.108 4.108 13 C -0.191 4.191 14 C -0.097 4.097 15 C -0.270 4.270 16 C -0.116 4.116 17 C -0.265 4.265 18 C 0.084 3.916 19 C -0.569 4.569 20 H 0.089 0.911 21 C -0.211 4.211 22 N -0.445 5.445 23 Si 0.924 3.076 24 H -0.196 1.196 25 H -0.200 1.200 26 H -0.176 1.176 27 H 0.115 0.885 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.123 0.877 31 H 0.118 0.882 32 H 0.229 0.771 33 H 0.177 0.823 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.246 0.754 37 H 0.132 0.868 38 H 0.112 0.888 39 H 0.139 0.861 40 H 0.136 0.864 41 H 0.126 0.874 42 H 0.100 0.900 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.819 -3.294 -17.511 18.458 hybrid contribution -0.446 -0.808 0.133 0.933 sum 4.373 -4.102 -17.377 18.383 Atomic orbital electron populations 1.22157 0.93371 1.04314 1.02418 1.21947 0.96054 0.76969 1.05288 1.48948 1.50329 1.12648 1.02722 1.77326 1.22539 1.05265 1.08791 1.24345 0.98575 0.96035 0.95194 1.21631 1.13253 0.98352 0.95698 1.20948 1.02672 0.93298 0.89659 1.19596 0.84492 1.01728 0.87563 1.45917 1.11312 1.66868 1.13230 1.21044 0.90982 0.76042 0.80771 1.90686 1.54857 1.45372 1.53699 1.20257 0.92573 1.03772 0.94186 1.19486 1.09930 0.96074 0.93619 1.20803 0.97921 0.94688 0.96280 1.20709 1.13397 1.00060 0.92857 1.20896 0.98475 0.93783 0.98434 1.21150 1.11860 0.97148 0.96388 1.17771 0.88743 0.93631 0.91462 1.20557 1.35795 0.94487 1.06051 0.91150 1.28198 0.97657 1.04707 0.90550 1.70557 1.09046 1.32017 1.32836 0.83143 0.73959 0.71885 0.78587 1.19647 1.19953 1.17605 0.88542 0.92573 0.92349 0.87669 0.88167 0.77149 0.82292 0.89824 0.90459 0.75377 0.86817 0.88761 0.86143 0.86404 0.87442 0.89980 0.90406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 10.24 71.98 0.74 -1.54 16 2 C 0.12 1.80 6.96 86.38 0.60 2.40 16 3 N -0.36 -7.47 3.61 -334.70 -1.21 -8.68 16 4 N -0.32 -7.17 12.58 -57.02 -0.72 -7.89 16 5 C 0.04 0.82 12.03 85.24 1.03 1.84 16 6 C -0.26 -5.24 10.72 21.99 0.24 -5.01 16 7 C 0.06 1.33 6.30 41.40 0.26 1.59 16 8 C 0.19 4.56 5.84 85.63 0.50 5.06 16 9 N -0.72 -18.52 5.44 -466.80 -2.54 -21.07 16 10 C 0.52 18.70 7.46 87.66 0.65 19.36 16 11 O -0.57 -26.01 16.03 -3.04 -0.05 -26.06 16 12 C -0.07 -2.47 5.18 29.10 0.15 -2.32 16 13 C -0.19 -8.75 4.43 -19.40 -0.09 -8.84 16 14 C -0.08 -3.38 9.66 22.22 0.21 -3.16 16 15 C -0.25 -10.97 10.05 22.46 0.23 -10.75 16 16 C -0.10 -4.66 10.02 22.22 0.22 -4.43 16 17 C -0.25 -13.28 7.95 22.73 0.18 -13.10 16 18 C 0.09 4.62 5.30 -21.29 -0.11 4.51 16 19 C -0.54 -28.76 8.08 23.46 0.19 -28.57 16 20 H 0.07 3.64 6.73 -2.91 -0.02 3.62 16 21 C 0.01 0.26 4.94 85.25 0.42 0.68 16 22 N -0.82 -44.80 12.31 21.82 0.27 -44.53 16 23 Si 1.11 44.21 30.00 68.60 2.06 46.26 16 24 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 25 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 26 H -0.25 -9.00 7.11 99.48 0.71 -8.29 16 27 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.06 0.88 7.75 -2.39 -0.02 0.86 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.10 1.39 7.15 -2.39 -0.02 1.37 16 32 H 0.21 2.50 8.06 -2.91 -0.02 2.47 16 33 H 0.16 2.83 8.06 -2.91 -0.02 2.80 16 34 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.08 1.82 7.24 -2.39 -0.02 1.80 16 36 H 0.41 8.69 8.18 -92.71 -0.76 7.93 16 37 H 0.11 3.18 8.05 -2.39 -0.02 3.16 16 38 H 0.09 3.47 7.06 -2.39 -0.02 3.46 16 39 H 0.12 4.25 8.06 -2.91 -0.02 4.23 16 40 H 0.12 4.36 8.06 -2.91 -0.02 4.34 16 41 H 0.11 4.54 8.06 -2.91 -0.02 4.52 16 42 H 0.08 4.68 6.49 -2.91 -0.02 4.66 16 43 H 0.28 16.08 6.68 -92.71 -0.62 15.46 16 Total: -1.00 -70.22 364.65 3.65 -66.56 By element: Atomic # 1 Polarization: 37.25 SS G_CDS: 0.42 Total: 37.67 kcal Atomic # 6 Polarization: -47.70 SS G_CDS: 5.42 Total: -42.28 kcal Atomic # 7 Polarization: -77.96 SS G_CDS: -4.20 Total: -82.16 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.05 Total: -26.06 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.06 Total: 46.26 kcal Total: -70.22 3.65 -66.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856478407.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.558 kcal (2) G-P(sol) polarization free energy of solvation -70.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds