Wall clock time and date at job start Tue Mar 31 2020 11:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34942 * 126.03707 * 2 1 4 4 C 1.35320 * 107.74621 * 180.14577 * 3 2 1 5 5 C 1.50696 * 126.03934 * 179.87093 * 4 3 2 6 6 H 1.09001 * 109.47778 * 339.71799 * 5 4 3 7 7 N 1.46497 * 109.47300 * 219.71352 * 5 4 3 8 8 C 1.34784 * 119.99857 * 85.00081 * 7 5 4 9 9 O 1.21279 * 120.00043 * 0.02562 * 8 7 5 10 10 C 1.50697 * 119.99855 * 180.02562 * 8 7 5 11 11 C 1.53001 * 109.47081 * 179.97438 * 10 8 7 12 12 C 1.50697 * 109.47081 * 180.02562 * 11 10 8 13 13 H 1.07993 * 120.00523 * 0.02562 * 12 11 10 14 14 C 1.37886 * 119.99869 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99605 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00000 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47225 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47235 * 119.99698 * 16 14 12 19 19 H 1.48504 * 109.47137 * 239.99482 * 16 14 12 20 20 C 1.50706 * 109.47183 * 99.71518 * 5 4 3 21 21 C 1.38234 * 120.00196 * 260.00153 * 20 5 4 22 22 C 1.38235 * 119.99814 * 179.97438 * 21 20 5 23 23 C 1.38230 * 120.00326 * 359.97438 * 22 21 20 24 24 C 1.38235 * 119.99899 * 359.95697 * 23 22 21 25 25 C 1.38234 * 120.00205 * 0.02562 * 24 23 22 26 26 C 1.39871 * 107.91751 * 359.60760 * 4 3 2 27 27 N 1.30840 * 108.20376 * 0.24282 * 26 4 3 28 28 H 1.09006 * 109.47247 * 270.30950 * 1 2 3 29 29 H 1.08997 * 109.46915 * 30.31045 * 1 2 3 30 30 H 1.08997 * 109.47394 * 150.31194 * 1 2 3 31 31 H 1.08007 * 126.13049 * 359.97438 * 3 2 1 32 32 H 0.97003 * 120.00248 * 265.00462 * 7 5 4 33 33 H 1.08993 * 109.47503 * 299.99992 * 10 8 7 34 34 H 1.08999 * 109.47276 * 60.00275 * 10 8 7 35 35 H 1.09000 * 109.47618 * 300.00372 * 11 10 8 36 36 H 1.09008 * 109.46537 * 59.99897 * 11 10 8 37 37 H 0.97005 * 119.99304 * 180.02562 * 15 14 12 38 38 H 1.08000 * 119.99516 * 0.24808 * 21 20 5 39 39 H 1.08000 * 119.99297 * 179.97438 * 22 21 20 40 40 H 1.08001 * 120.00371 * 179.97438 * 23 22 21 41 41 H 1.07999 * 120.00043 * 179.97438 * 24 23 22 42 42 H 1.07997 * 120.00455 * 179.97438 * 25 24 23 43 43 H 1.07998 * 125.89750 * 180.21888 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 -0.0033 5 6 4.7680 1.5452 -0.0072 6 1 4.5002 2.5400 -0.3633 7 7 5.7818 0.9663 -0.8922 8 6 5.7497 1.2259 -2.2144 9 8 4.8818 1.9391 -2.6714 10 6 6.7922 0.6299 -3.1248 11 6 6.5289 1.0779 -4.5638 12 6 7.5711 0.4814 -5.4743 13 1 8.3437 -0.1540 -5.0674 14 6 7.5382 0.7468 -6.8270 15 7 6.5969 1.5202 -7.3225 16 14 8.8295 0.0069 -7.9557 17 1 9.7696 -0.8202 -7.1572 18 1 8.1661 -0.8433 -8.9766 19 1 9.5799 1.0963 -8.6305 20 6 5.3198 1.6443 1.3917 21 6 5.0480 2.7576 2.1647 22 6 5.5537 2.8481 3.4480 23 6 6.3308 1.8252 3.9585 24 6 6.6014 0.7112 3.1860 25 6 6.0954 0.6205 1.9028 26 6 3.5346 -0.7322 0.0038 27 7 2.2891 -1.1328 0.0057 28 1 -0.3634 0.0056 1.0277 29 1 -0.3633 0.8872 -0.5186 30 1 -0.3634 -0.8927 -0.5090 31 1 1.9281 2.1194 -0.0004 32 1 6.4762 0.3961 -0.5266 33 1 7.7812 0.9668 -2.8143 34 1 6.7447 -0.4576 -3.0687 35 1 5.5399 0.7406 -4.8742 36 1 6.5761 2.1655 -4.6201 37 1 6.5735 1.7067 -8.2742 38 1 4.4369 3.5546 1.7675 39 1 5.3417 3.7181 4.0518 40 1 6.7262 1.8961 4.9610 41 1 7.2088 -0.0878 3.5847 42 1 6.3071 -0.2496 1.2991 43 1 4.4054 -1.3711 0.0066 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324257813.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:19 Heat of formation + Delta-G solvation = 61.444841 kcal Electronic energy + Delta-G solvation = -25069.196305 eV Core-core repulsion = 21501.856741 eV Total energy + Delta-G solvation = -3567.339564 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.33181 -39.65347 -38.66149 -35.26629 -33.39445 -33.03564 -31.74190 -31.03906 -30.60266 -30.07452 -27.36764 -25.92366 -24.79008 -22.93120 -21.85373 -21.49515 -20.99162 -19.99666 -19.49233 -17.36568 -17.04378 -16.64138 -15.76185 -15.65946 -15.36781 -15.02935 -14.91509 -14.58510 -14.41102 -14.22990 -13.77781 -13.54121 -13.29611 -13.05110 -12.91011 -12.70393 -12.54706 -12.27886 -12.12094 -11.99994 -11.31100 -11.16856 -11.10586 -10.91932 -10.66902 -10.54958 -9.90788 -9.61246 -9.41032 -9.23981 -9.07357 -9.05990 -8.84232 -8.76237 -8.33239 -8.28504 -5.92865 -3.96711 1.17087 1.25079 1.89741 2.49394 2.79178 3.34637 3.35452 3.41772 3.45157 3.55974 3.73545 4.47108 4.51141 4.67187 4.72132 4.81644 4.84619 4.96257 4.97372 5.08391 5.22729 5.28056 5.34940 5.36396 5.42259 5.49219 5.67184 5.79235 5.82043 5.88198 6.07534 6.28471 6.29408 6.31293 6.35046 6.41888 6.61927 6.81966 6.83173 6.95476 6.98213 7.68895 7.78895 7.91519 7.95938 8.11489 8.43161 8.86766 9.12464 9.66597 11.18147 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.012529 B = 0.003335 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.226564 B = 8394.572149 C = 9854.219231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.378 5.378 3 C 0.070 3.930 4 C -0.236 4.236 5 C 0.264 3.736 6 H 0.098 0.902 7 N -0.735 5.735 8 C 0.514 3.486 9 O -0.531 6.531 10 C -0.130 4.130 11 C 0.038 3.962 12 C -0.525 4.525 13 H 0.056 0.944 14 C 0.057 3.943 15 N -0.890 5.890 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.075 4.075 21 C -0.109 4.109 22 C -0.118 4.118 23 C -0.125 4.125 24 C -0.117 4.117 25 C -0.110 4.110 26 C 0.068 3.932 27 N -0.300 5.300 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.172 0.828 32 H 0.396 0.604 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.023 0.977 36 H 0.023 0.977 37 H 0.260 0.740 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.122 0.878 43 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.972 -0.327 24.752 25.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.160 5.160 3 C -0.077 4.077 4 C -0.248 4.248 5 C 0.158 3.842 6 H 0.115 0.885 7 N -0.389 5.389 8 C 0.303 3.697 9 O -0.406 6.406 10 C -0.170 4.170 11 C 0.000 4.000 12 C -0.563 4.563 13 H 0.074 0.926 14 C -0.144 4.144 15 N -0.529 5.529 16 Si 0.720 3.280 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.076 4.076 21 C -0.127 4.127 22 C -0.136 4.136 23 C -0.143 4.143 24 C -0.135 4.135 25 C -0.128 4.128 26 C -0.119 4.119 27 N -0.121 5.121 28 H 0.090 0.910 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.189 0.811 32 H 0.231 0.769 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.041 0.959 36 H 0.042 0.958 37 H 0.069 0.931 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -8.640 -0.732 24.209 25.716 hybrid contribution 1.458 0.045 -0.491 1.539 sum -7.182 -0.687 23.719 24.792 Atomic orbital electron populations 1.21821 0.74393 1.04585 1.03000 1.48393 1.06513 1.03832 1.57272 1.22212 0.90687 0.93356 1.01397 1.20210 0.94085 0.94169 1.16369 1.17715 0.84561 0.96352 0.85621 0.88458 1.46297 1.31236 1.53553 1.07793 1.21515 0.86490 0.80145 0.81582 1.90651 1.37563 1.37215 1.75130 1.21861 0.96173 1.00747 0.98207 1.18889 0.97297 0.97286 0.86528 1.21274 1.12477 1.30134 0.92441 0.92559 1.25030 0.95817 0.95277 0.98320 1.70017 1.32967 1.36989 1.12911 0.86546 0.81656 0.78974 0.80847 1.19732 1.21066 1.21047 1.19932 0.97479 0.94617 0.95523 1.20988 0.99989 0.97411 0.94313 1.21105 0.98094 0.98848 0.95592 1.21139 0.99039 0.94309 0.99824 1.21121 0.99902 0.98132 0.94334 1.20935 0.97789 0.98348 0.95723 1.23558 0.94974 0.94346 0.98986 1.77329 1.01642 1.08210 1.24914 0.90999 0.89502 0.89353 0.81059 0.76942 0.90260 0.90308 0.95904 0.95846 0.93075 0.85919 0.86124 0.86301 0.86047 0.86059 0.80616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.82 11.47 59.85 0.69 1.50 16 2 N -0.38 -4.75 4.01 -68.16 -0.27 -5.02 16 3 C 0.07 0.87 11.40 -17.22 -0.20 0.67 16 4 C -0.24 -3.17 5.02 -105.05 -0.53 -3.70 16 5 C 0.26 3.43 2.60 -70.23 -0.18 3.24 16 6 H 0.10 1.40 7.43 -51.93 -0.39 1.01 16 7 N -0.73 -10.38 4.77 -56.07 -0.27 -10.65 16 8 C 0.51 9.90 7.79 -10.98 -0.09 9.81 16 9 O -0.53 -12.46 15.64 5.56 0.09 -12.38 16 10 C -0.13 -2.66 5.64 -27.88 -0.16 -2.82 16 11 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 12 C -0.52 -15.05 9.11 -34.44 -0.31 -15.37 16 13 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 14 C 0.06 1.67 5.46 -17.81 -0.10 1.58 16 15 N -0.89 -27.71 13.29 55.43 0.74 -26.97 16 16 Si 0.89 21.89 29.54 -169.99 -5.02 16.86 16 17 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 20 C -0.07 -0.82 4.94 -104.62 -0.52 -1.33 16 21 C -0.11 -1.08 9.67 -39.58 -0.38 -1.46 16 22 C -0.12 -1.04 10.05 -39.59 -0.40 -1.44 16 23 C -0.12 -1.06 10.05 -39.59 -0.40 -1.46 16 24 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 25 C -0.11 -1.07 9.05 -39.58 -0.36 -1.43 16 26 C 0.07 0.94 11.66 -17.36 -0.20 0.74 16 27 N -0.30 -4.45 12.58 30.62 0.39 -4.06 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.17 1.61 8.06 -52.48 -0.42 1.18 16 32 H 0.40 4.48 6.88 -40.82 -0.28 4.20 16 33 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 35 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 36 H 0.02 0.69 8.10 -51.92 -0.42 0.27 16 37 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.12 1.05 8.04 -52.49 -0.42 0.63 16 39 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 40 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 41 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 42 H 0.12 1.02 6.92 -52.49 -0.36 0.66 16 43 H 0.18 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 371.88 15.07 5.60 5.60 Total: -1.00 -37.43 371.88 -8.46 -45.89 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -6.06 Total: 2.70 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -3.65 Total: -11.98 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: 0.58 Total: -46.70 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.09 Total: -12.38 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -37.43 -8.46 -45.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324257813.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.334 kcal (2) G-P(sol) polarization free energy of solvation -37.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds