Wall clock time and date at job start Tue Mar 31 2020 10:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46939 * 2 1 4 4 C 1.52996 * 109.47238 * 239.99819 * 2 1 3 5 5 N 1.46498 * 109.47059 * 64.99625 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31611 * 120.00081 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99814 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47483 * 90.00178 * 10 8 6 12 12 H 1.48498 * 109.47011 * 210.00042 * 10 8 6 13 13 H 1.48502 * 109.47495 * 329.99664 * 10 8 6 14 14 C 1.53003 * 109.47108 * 119.99256 * 2 1 3 15 15 N 1.46490 * 109.47559 * 295.00069 * 14 2 1 16 16 C 1.34773 * 120.00384 * 179.97438 * 15 14 2 17 17 O 1.21566 * 119.99792 * 0.02562 * 16 15 14 18 18 C 1.47763 * 120.00508 * 179.97438 * 16 15 14 19 19 C 1.40633 * 119.80390 * 0.02562 * 18 16 15 20 20 C 1.35698 * 120.92060 * 179.97438 * 19 18 16 21 21 C 1.40748 * 120.11607 * 359.97438 * 20 19 18 22 22 N 1.33644 * 120.82954 * 180.02562 * 21 20 19 23 23 C 1.31122 * 121.39431 * 180.02562 * 22 21 20 24 24 C 1.39305 * 121.77095 * 359.96247 * 23 22 21 25 25 C 1.36585 * 119.90564 * 0.02562 * 24 23 22 26 26 C 1.40890 * 118.15537 * 0.02562 * 25 24 23 27 27 C 1.38553 * 119.80511 * 179.72731 * 18 16 15 28 28 H 1.09001 * 109.47309 * 60.00201 * 1 2 3 29 29 H 1.08995 * 109.46988 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46786 * 300.00471 * 1 2 3 31 31 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 32 32 H 1.08994 * 109.46974 * 185.00040 * 4 2 1 33 33 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 34 34 H 0.97008 * 120.00329 * 179.97438 * 9 8 6 35 35 H 1.08998 * 109.46886 * 55.00501 * 14 2 1 36 36 H 1.09002 * 109.46923 * 174.99751 * 14 2 1 37 37 H 0.97002 * 120.00315 * 0.02562 * 15 14 2 38 38 H 1.08001 * 119.53469 * 359.94937 * 19 18 16 39 39 H 1.08005 * 119.94189 * 179.97438 * 20 19 18 40 40 H 1.08009 * 119.11429 * 179.97438 * 23 22 21 41 41 H 1.07994 * 120.05266 * 179.97438 * 24 23 22 42 42 H 1.08002 * 120.92230 * 179.97438 * 25 24 23 43 43 H 1.07999 * 120.29733 * 0.03067 * 27 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6524 0.0353 -2.4423 6 6 2.0064 -0.4178 -3.6852 7 1 2.5675 -1.3351 -3.7860 8 6 1.6441 0.3020 -4.8155 9 7 1.9838 -0.1336 -6.0100 10 14 0.6743 1.8890 -4.6410 11 1 1.6138 3.0324 -4.5180 12 1 -0.1830 2.0794 -5.8385 13 1 -0.1791 1.8169 -3.4278 14 6 2.0400 -0.7211 1.2494 15 7 1.6525 0.0355 2.4424 16 6 1.9956 -0.4133 3.6660 17 8 2.6271 -1.4458 3.7796 18 6 1.6052 0.3502 4.8694 19 6 0.8752 1.5444 4.7332 20 6 0.5045 2.2632 5.8228 21 6 0.8486 1.8181 7.1129 22 7 0.4905 2.5145 8.1959 23 6 0.8056 2.1104 9.4029 24 6 1.5267 0.9383 9.6190 25 6 1.9245 0.1778 8.5565 26 6 1.5850 0.6158 7.2612 27 6 1.9553 -0.1180 6.1256 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6054 -1.7199 -1.2950 32 1 3.1263 -0.7995 -1.2055 33 1 1.1488 0.8593 -2.3518 34 1 1.7304 0.3692 -6.7999 35 1 1.6054 -1.7197 1.2953 36 1 3.1263 -0.7993 1.2057 37 1 1.1483 0.8592 2.3518 38 1 0.6062 1.8945 3.7475 39 1 -0.0556 3.1785 5.6998 40 1 0.4976 2.7022 10.2523 41 1 1.7715 0.6317 10.6252 42 1 2.4845 -0.7336 8.7052 43 1 2.5122 -1.0375 6.2286 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753628898.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:22:39 Heat of formation + Delta-G solvation = 26.421239 kcal Electronic energy + Delta-G solvation = -24130.295780 eV Core-core repulsion = 20561.437479 eV Total energy + Delta-G solvation = -3568.858301 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.34901 -39.91618 -37.36973 -36.81794 -34.63291 -33.96747 -32.66193 -31.23253 -30.54574 -30.37712 -26.92806 -25.98938 -24.59478 -24.30198 -22.60894 -22.04395 -21.15728 -20.26966 -18.74250 -18.25279 -17.45243 -17.38516 -16.27143 -16.05327 -15.61884 -14.96012 -14.89636 -14.69347 -14.46330 -14.38566 -14.13754 -13.89208 -13.73736 -13.52831 -13.23936 -12.72436 -12.52806 -12.50195 -12.25843 -12.02208 -11.91976 -11.47357 -11.08720 -11.07019 -10.79033 -10.66173 -10.64603 -10.20999 -10.07477 -9.99321 -9.59717 -9.35948 -9.15977 -8.91940 -8.73978 -7.25119 -5.78069 -3.13888 -0.23085 0.19398 1.44846 2.02766 2.93930 3.01968 3.34269 3.36813 3.43199 3.66603 3.76077 4.09425 4.19371 4.32074 4.41505 4.53536 4.56994 4.62340 4.69483 4.85468 4.97953 5.05187 5.19559 5.27118 5.41062 5.45676 5.52432 5.53304 5.62672 5.70343 5.75383 5.78991 5.84439 5.87750 5.99570 6.04446 6.19236 6.25489 6.32721 6.42777 6.62891 6.72044 7.29752 7.39621 7.98016 7.99331 8.40693 9.19548 9.91590 10.11145 11.40320 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.031467 B = 0.002139 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.594122 B =13088.170154 C =13823.832310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 H 0.076 0.924 4 C 0.165 3.835 5 N -0.754 5.754 6 C -0.244 4.244 7 H 0.091 0.909 8 C 0.003 3.997 9 N -0.934 5.934 10 Si 0.885 3.115 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.278 1.278 14 C 0.126 3.874 15 N -0.719 5.719 16 C 0.556 3.444 17 O -0.537 6.537 18 C -0.131 4.131 19 C -0.075 4.075 20 C -0.096 4.096 21 C 0.142 3.858 22 N -0.478 5.478 23 C 0.140 3.860 24 C -0.181 4.181 25 C -0.045 4.045 26 C -0.114 4.114 27 C -0.025 4.025 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.044 0.956 31 H 0.031 0.969 32 H 0.030 0.970 33 H 0.361 0.639 34 H 0.259 0.741 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.400 0.600 38 H 0.134 0.866 39 H 0.142 0.858 40 H 0.161 0.839 41 H 0.140 0.860 42 H 0.143 0.857 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.182 4.268 33.606 34.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.135 4.135 3 H 0.095 0.905 4 C 0.037 3.963 5 N -0.400 5.400 6 C -0.374 4.374 7 H 0.108 0.892 8 C -0.192 4.192 9 N -0.581 5.581 10 Si 0.716 3.284 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.003 3.997 15 N -0.370 5.370 16 C 0.342 3.658 17 O -0.415 6.415 18 C -0.134 4.134 19 C -0.095 4.095 20 C -0.115 4.115 21 C 0.021 3.979 22 N -0.186 5.186 23 C -0.032 4.032 24 C -0.201 4.201 25 C -0.071 4.071 26 C -0.116 4.116 27 C -0.045 4.045 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.194 0.806 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.235 0.765 38 H 0.152 0.848 39 H 0.160 0.840 40 H 0.179 0.821 41 H 0.158 0.842 42 H 0.161 0.839 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.113 4.141 33.217 33.618 hybrid contribution -0.479 0.828 0.045 0.958 sum -3.592 4.969 33.262 33.823 Atomic orbital electron populations 1.21829 0.94721 1.02368 1.01269 1.21620 0.96672 1.00598 0.94564 0.90520 1.20549 0.97244 0.94253 0.84246 1.42680 1.67575 1.27394 1.02362 1.19065 1.29412 1.07162 0.81777 0.89165 1.24680 1.00785 0.98649 0.95113 1.69699 1.51271 1.40221 0.96958 0.86543 0.80226 0.84833 0.76844 1.21099 1.21718 1.20390 1.21451 1.00515 0.95333 0.82416 1.45979 1.57351 1.27863 1.05853 1.18146 0.79610 0.84849 0.83161 1.90793 1.39954 1.24055 1.86665 1.19989 1.02662 0.96894 0.93899 1.20977 0.95809 0.93313 0.99446 1.20695 1.00488 1.00717 0.89593 1.19020 0.94622 0.90943 0.93322 1.68090 1.20083 1.31826 0.98617 1.23072 0.92063 0.93411 0.94690 1.21929 1.00854 0.96804 1.00481 1.21599 0.95478 0.98923 0.91106 1.18822 1.01434 0.96844 0.94541 1.21468 0.94769 0.98313 0.89941 0.91683 0.92289 0.93709 0.95098 0.95172 0.80634 0.93048 0.90873 0.90855 0.76452 0.84781 0.84001 0.82142 0.84173 0.83902 0.83572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 8.94 37.16 0.33 -1.56 16 2 C -0.12 -1.60 2.46 -90.62 -0.22 -1.82 16 3 H 0.08 1.03 8.14 -51.92 -0.42 0.61 16 4 C 0.16 3.05 5.65 -4.04 -0.02 3.03 16 5 N -0.75 -17.49 5.13 -59.91 -0.31 -17.79 16 6 C -0.24 -6.89 10.47 -15.06 -0.16 -7.05 16 7 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 8 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 9 N -0.93 -29.31 13.97 55.49 0.78 -28.54 16 10 Si 0.89 21.84 27.74 -169.99 -4.71 17.13 16 11 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 12 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 13 H -0.28 -6.35 6.52 56.52 0.37 -5.98 16 14 C 0.13 1.59 5.06 -4.05 -0.02 1.57 16 15 N -0.72 -7.75 5.23 -61.28 -0.32 -8.07 16 16 C 0.56 6.79 7.77 -12.37 -0.10 6.69 16 17 O -0.54 -8.38 16.31 5.31 0.09 -8.30 16 18 C -0.13 -1.32 5.87 -104.98 -0.62 -1.93 16 19 C -0.08 -0.61 9.44 -39.59 -0.37 -0.99 16 20 C -0.10 -0.82 9.95 -39.54 -0.39 -1.21 16 21 C 0.14 1.38 6.61 -84.78 -0.56 0.82 16 22 N -0.48 -4.49 10.33 -10.92 -0.11 -4.60 16 23 C 0.14 0.90 11.14 -17.46 -0.19 0.71 16 24 C -0.18 -0.95 10.03 -39.78 -0.40 -1.34 16 25 C -0.05 -0.29 9.89 -39.18 -0.39 -0.68 16 26 C -0.11 -1.02 5.74 -106.81 -0.61 -1.63 16 27 C -0.03 -0.24 9.35 -38.73 -0.36 -0.60 16 28 H 0.06 0.99 7.18 -51.93 -0.37 0.61 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.04 0.46 7.18 -51.93 -0.37 0.08 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.36 8.07 4.71 -40.82 -0.19 7.88 16 34 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.40 3.34 5.64 -40.82 -0.23 3.11 16 38 H 0.13 0.77 6.35 -52.49 -0.33 0.44 16 39 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 40 H 0.16 0.52 8.06 -52.48 -0.42 0.10 16 41 H 0.14 0.31 8.06 -52.49 -0.42 -0.11 16 42 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 43 H 0.15 1.30 7.62 -52.49 -0.40 0.90 16 LS Contribution 359.44 15.07 5.42 5.42 Total: -1.00 -35.29 359.44 -9.08 -44.37 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -5.72 Total: 6.39 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -4.18 Total: -5.99 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: 0.03 Total: -59.01 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.09 Total: -8.30 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.71 Total: 17.13 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.29 -9.08 -44.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753628898.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.789 kcal (2) G-P(sol) polarization free energy of solvation -35.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds