Wall clock time and date at job start Tue Mar 31 2020 10:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47029 * 2 1 4 4 C 1.53007 * 109.46988 * 119.99171 * 2 1 3 5 5 N 1.46502 * 109.47342 * 295.00469 * 4 2 1 6 6 C 1.36933 * 119.99964 * 179.97438 * 5 4 2 7 7 H 1.07999 * 119.99805 * 359.97438 * 6 5 4 8 8 C 1.38810 * 119.99791 * 179.97438 * 6 5 4 9 9 N 1.31618 * 120.00291 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00087 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46665 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47081 * 119.99830 * 10 8 6 13 13 H 1.48494 * 109.47583 * 240.00299 * 10 8 6 14 14 C 1.52995 * 109.47457 * 239.99355 * 2 1 3 15 15 N 1.46496 * 109.47096 * 65.00221 * 14 2 1 16 16 C 1.34781 * 120.00113 * 180.02562 * 15 14 2 17 17 O 1.21562 * 119.99593 * 359.97438 * 16 15 14 18 18 C 1.47772 * 119.99934 * 179.97438 * 16 15 14 19 19 C 1.40631 * 119.80317 * 0.02562 * 18 16 15 20 20 C 1.35701 * 120.91705 * 179.97438 * 19 18 16 21 21 C 1.40762 * 120.11567 * 0.02562 * 20 19 18 22 22 N 1.33645 * 120.82941 * 180.02562 * 21 20 19 23 23 C 1.31119 * 121.39025 * 179.97438 * 22 21 20 24 24 C 1.39317 * 121.77207 * 0.04723 * 23 22 21 25 25 C 1.36578 * 119.90161 * 359.93582 * 24 23 22 26 26 C 1.40895 * 118.16111 * 0.03603 * 25 24 23 27 27 C 1.38545 * 119.79990 * 179.97438 * 18 16 15 28 28 H 1.08997 * 109.47619 * 300.00352 * 1 2 3 29 29 H 1.09002 * 109.47073 * 60.00754 * 1 2 3 30 30 H 1.09004 * 109.47529 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46949 * 55.00176 * 4 2 1 32 32 H 1.09000 * 109.46913 * 175.00370 * 4 2 1 33 33 H 0.97001 * 119.99384 * 359.97438 * 5 4 2 34 34 H 0.96995 * 120.00126 * 179.97438 * 9 8 6 35 35 H 1.09003 * 109.47132 * 305.00178 * 14 2 1 36 36 H 1.09003 * 109.47216 * 185.00139 * 14 2 1 37 37 H 0.97000 * 119.99924 * 359.97438 * 15 14 2 38 38 H 1.08002 * 119.54039 * 359.97438 * 19 18 16 39 39 H 1.08007 * 119.94072 * 179.97438 * 20 19 18 40 40 H 1.07999 * 119.11678 * 180.02562 * 23 22 21 41 41 H 1.08002 * 120.05155 * 179.97438 * 24 23 22 42 42 H 1.08005 * 120.92000 * 180.31415 * 25 24 23 43 43 H 1.07994 * 120.30536 * 0.02800 * 27 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0399 -0.7211 1.2494 5 7 1.6523 0.0356 2.4425 6 6 2.0009 -0.4204 3.6857 7 1 2.5612 -1.3382 3.7867 8 6 1.6340 0.2968 4.8161 9 7 0.9507 1.4150 4.6930 10 14 2.1089 -0.3256 6.5121 11 1 2.8680 -1.5950 6.3789 12 1 2.9551 0.6876 7.1922 13 1 0.8817 -0.5640 7.3135 14 6 2.0400 -0.7214 -1.2491 15 7 1.6525 0.0351 -2.4423 16 6 1.9957 -0.4140 -3.6659 17 8 2.6272 -1.4465 -3.7792 18 6 1.6044 0.3488 -4.8695 19 6 0.8743 1.5431 -4.7334 20 6 0.5037 2.2617 -5.8232 21 6 0.8479 1.8164 -7.1133 22 7 0.4907 2.5132 -8.1964 23 6 0.8058 2.1088 -9.4032 24 6 1.5259 0.9359 -9.6192 25 6 1.9232 0.1754 -8.5565 26 6 1.5831 0.6134 -7.2613 27 6 1.9598 -0.1163 -6.1252 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 1.6053 -1.7196 1.2954 32 1 3.1262 -0.7993 1.2058 33 1 1.1487 0.8596 2.3516 34 1 0.6940 1.9160 5.4829 35 1 1.6054 -1.7199 -1.2949 36 1 3.1263 -0.7996 -1.2054 37 1 1.1483 0.8588 -2.3518 38 1 0.6049 1.8932 -3.7478 39 1 -0.0571 3.1766 -5.7004 40 1 0.4987 2.7008 -10.2527 41 1 1.7701 0.6287 -10.6254 42 1 2.4864 -0.7341 -8.7047 43 1 2.5207 -1.0334 -6.2279 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753628912.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:22:43 Heat of formation + Delta-G solvation = 21.893707 kcal Electronic energy + Delta-G solvation = -24047.074751 eV Core-core repulsion = 20478.020122 eV Total energy + Delta-G solvation = -3569.054630 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.30226 -39.85111 -37.27370 -36.70332 -34.49536 -33.92027 -32.62805 -31.13243 -30.47954 -29.95233 -26.80233 -25.71424 -24.54032 -24.25604 -22.68787 -22.27992 -21.10795 -20.08567 -18.62465 -18.17325 -17.34302 -17.03250 -16.19184 -15.99637 -15.53915 -14.92525 -14.83263 -14.66213 -14.43867 -14.27321 -14.03239 -13.83831 -13.63632 -13.50301 -13.05893 -12.71829 -12.47308 -12.38563 -12.09736 -11.95462 -11.86440 -11.07969 -11.04218 -10.93688 -10.73677 -10.59766 -10.45328 -10.15472 -9.97449 -9.94402 -9.69017 -9.30724 -9.09099 -8.89225 -8.69129 -6.93311 -5.78140 -3.06523 -0.18555 0.24012 1.49267 2.07817 3.01336 3.07243 3.43026 3.49011 3.51055 3.71289 3.80592 4.13796 4.23682 4.37256 4.46024 4.57813 4.58807 4.67923 4.75709 5.00529 5.04116 5.18743 5.31424 5.35461 5.45821 5.50549 5.56869 5.58071 5.77809 5.81438 5.85438 5.94154 5.96491 6.04200 6.08405 6.20861 6.30484 6.36471 6.42586 6.63369 6.75256 6.84650 7.37567 7.43811 7.70269 8.05682 8.40992 9.52413 10.09498 10.44260 11.44912 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.039036 B = 0.001968 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.107614 B =14222.078686 C =14781.170030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 H 0.077 0.923 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.238 4.238 7 H 0.071 0.929 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.907 3.093 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.126 3.874 15 N -0.717 5.717 16 C 0.555 3.445 17 O -0.538 6.538 18 C -0.130 4.130 19 C -0.075 4.075 20 C -0.096 4.096 21 C 0.142 3.858 22 N -0.478 5.478 23 C 0.140 3.860 24 C -0.181 4.181 25 C -0.045 4.045 26 C -0.114 4.114 27 C -0.026 4.026 28 H 0.070 0.930 29 H 0.041 0.959 30 H 0.054 0.946 31 H 0.023 0.977 32 H 0.021 0.979 33 H 0.384 0.616 34 H 0.254 0.746 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.400 0.600 38 H 0.135 0.865 39 H 0.143 0.857 40 H 0.161 0.839 41 H 0.140 0.860 42 H 0.143 0.857 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.890 0.867 -30.346 30.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.130 4.130 3 H 0.095 0.905 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.369 4.369 7 H 0.089 0.911 8 C -0.211 4.211 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.003 3.997 15 N -0.369 5.369 16 C 0.342 3.658 17 O -0.417 6.417 18 C -0.134 4.134 19 C -0.095 4.095 20 C -0.115 4.115 21 C 0.021 3.979 22 N -0.186 5.186 23 C -0.033 4.033 24 C -0.201 4.201 25 C -0.071 4.071 26 C -0.116 4.116 27 C -0.046 4.046 28 H 0.089 0.911 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.041 0.959 32 H 0.039 0.961 33 H 0.218 0.782 34 H 0.064 0.936 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.236 0.764 38 H 0.153 0.847 39 H 0.160 0.840 40 H 0.178 0.822 41 H 0.158 0.842 42 H 0.161 0.839 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.845 0.784 -30.008 30.030 hybrid contribution 0.280 -0.337 0.856 0.961 sum -0.564 0.447 -29.153 29.161 Atomic orbital electron populations 1.21801 0.94619 1.02031 1.01508 1.21564 0.96754 1.00552 0.94162 0.90460 1.20575 0.96643 0.94221 0.85335 1.42342 1.66954 1.27661 1.00585 1.19287 1.28625 1.05394 0.83639 0.91076 1.24740 1.01046 0.97413 0.97881 1.69662 1.43629 1.16616 1.28388 0.86107 0.77587 0.77841 0.84610 1.20538 1.21884 1.21876 1.21475 1.00338 0.95307 0.82627 1.45994 1.57211 1.27862 1.05827 1.18153 0.79623 0.84846 0.83192 1.90784 1.40090 1.24105 1.86698 1.20002 1.02537 0.96907 0.93913 1.20997 0.95744 0.93245 0.99513 1.20706 1.00466 1.00741 0.89568 1.19024 0.94667 0.90911 0.93323 1.68089 1.20029 1.31849 0.98614 1.23066 0.92106 0.93426 0.94696 1.21925 1.00925 0.96805 1.00452 1.21593 0.95506 0.98913 0.91125 1.18818 1.01424 0.96865 0.94520 1.21456 0.94860 0.98327 0.89951 0.91059 0.93956 0.92738 0.95946 0.96082 0.78206 0.93576 0.91072 0.91074 0.76372 0.84682 0.83966 0.82167 0.84208 0.83942 0.83613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.94 37.15 0.33 -1.71 16 2 C -0.11 -1.67 2.46 -90.62 -0.22 -1.89 16 3 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 4 C 0.16 3.14 5.65 -4.04 -0.02 3.12 16 5 N -0.73 -18.14 5.33 -59.91 -0.32 -18.46 16 6 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 7 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 8 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 9 N -0.93 -28.02 13.06 55.49 0.72 -27.29 16 10 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 13 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 14 C 0.13 1.69 5.06 -4.05 -0.02 1.67 16 15 N -0.72 -8.29 5.23 -61.28 -0.32 -8.61 16 16 C 0.56 7.11 7.77 -12.36 -0.10 7.01 16 17 O -0.54 -8.69 16.31 5.31 0.09 -8.60 16 18 C -0.13 -1.38 5.87 -104.98 -0.62 -1.99 16 19 C -0.07 -0.65 9.44 -39.59 -0.37 -1.02 16 20 C -0.10 -0.86 9.95 -39.54 -0.39 -1.26 16 21 C 0.14 1.43 6.61 -84.78 -0.56 0.87 16 22 N -0.48 -4.66 10.33 -10.92 -0.11 -4.77 16 23 C 0.14 0.94 11.15 -17.45 -0.19 0.75 16 24 C -0.18 -1.00 10.03 -39.78 -0.40 -1.40 16 25 C -0.05 -0.31 9.89 -39.18 -0.39 -0.69 16 26 C -0.11 -1.06 5.74 -106.82 -0.61 -1.67 16 27 C -0.03 -0.26 9.35 -38.74 -0.36 -0.62 16 28 H 0.07 1.20 7.18 -51.93 -0.37 0.83 16 29 H 0.04 0.48 7.18 -51.93 -0.37 0.11 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.38 9.89 6.85 -40.82 -0.28 9.61 16 34 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.40 3.70 5.64 -40.82 -0.23 3.47 16 38 H 0.14 0.87 6.35 -52.49 -0.33 0.53 16 39 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 40 H 0.16 0.57 8.06 -52.49 -0.42 0.15 16 41 H 0.14 0.35 8.06 -52.49 -0.42 -0.08 16 42 H 0.14 0.61 8.06 -52.48 -0.42 0.19 16 43 H 0.15 1.35 7.62 -52.49 -0.40 0.95 16 LS Contribution 362.56 15.07 5.46 5.46 Total: -1.00 -34.33 362.56 -9.44 -43.77 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -5.76 Total: 7.28 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -4.18 Total: -6.16 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: -0.03 Total: -59.13 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.09 Total: -8.60 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.33 -9.44 -43.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753628912.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.662 kcal (2) G-P(sol) polarization free energy of solvation -34.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds