Wall clock time and date at job start Tue Mar 31 2020 10:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 120.00181 * 2 1 4 4 H 1.48496 * 109.47211 * 270.00359 * 3 2 1 5 5 H 1.48503 * 109.46825 * 30.00404 * 3 2 1 6 6 H 1.48497 * 109.47129 * 149.99746 * 3 2 1 7 7 C 1.37878 * 120.00199 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99960 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99750 * 0.27920 * 7 2 1 10 10 H 1.08998 * 109.50641 * 59.71875 * 9 7 2 11 11 C 1.53123 * 109.50429 * 299.64421 * 9 7 2 12 12 C 1.53110 * 109.16341 * 182.40612 * 11 9 7 13 13 C 1.53039 * 109.28006 * 57.65322 * 12 11 9 14 14 N 1.46843 * 109.52243 * 300.82262 * 13 12 11 15 15 C 1.38374 * 110.99992 * 185.83845 * 14 13 12 16 16 N 1.31486 * 126.44163 * 118.78594 * 15 14 13 17 17 N 1.28418 * 110.51144 * 179.97438 * 16 15 14 18 18 N 1.28911 * 110.31354 * 0.02562 * 17 16 15 19 19 N 1.35309 * 126.44122 * 298.47345 * 15 14 13 20 20 C 1.46501 * 127.38037 * 0.02562 * 19 15 14 21 21 C 1.50693 * 109.47406 * 114.78797 * 20 19 15 22 22 C 1.38234 * 120.00311 * 262.61284 * 21 20 19 23 23 C 1.38238 * 120.00241 * 179.78550 * 22 21 20 24 24 C 1.38236 * 119.99637 * 0.44600 * 23 22 21 25 25 C 1.38237 * 120.00061 * 359.80622 * 24 23 22 26 26 C 1.38231 * 119.99887 * 359.97438 * 25 24 23 27 27 C 1.46842 * 111.23704 * 61.72053 * 14 13 12 28 28 H 0.97007 * 120.00113 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.51967 * 302.31481 * 11 9 7 30 30 H 1.08998 * 109.52432 * 62.43162 * 11 9 7 31 31 H 1.08999 * 109.50653 * 177.59411 * 12 11 9 32 32 H 1.09000 * 109.50655 * 297.70979 * 12 11 9 33 33 H 1.09004 * 109.46129 * 60.83767 * 13 12 11 34 34 H 1.09002 * 109.46180 * 180.81443 * 13 12 11 35 35 H 1.09002 * 109.46830 * 234.79092 * 20 19 15 36 36 H 1.08994 * 109.46573 * 354.78645 * 20 19 15 37 37 H 1.08004 * 119.99944 * 0.02562 * 22 21 20 38 38 H 1.08000 * 119.99922 * 180.27510 * 23 22 21 39 39 H 1.08000 * 119.99526 * 179.83436 * 24 23 22 40 40 H 1.08002 * 119.99266 * 180.02562 * 25 24 23 41 41 H 1.08005 * 119.99482 * 179.97438 * 26 25 24 42 42 H 1.08994 * 109.50274 * 178.28189 * 27 14 13 43 43 H 1.09007 * 109.43071 * 58.31149 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0075 10 1 0.6241 -2.5527 -0.8975 11 6 0.3719 -2.5885 1.2430 12 6 -0.3437 -3.9420 1.2586 13 6 0.6963 -5.0639 1.2187 14 7 1.5111 -4.9348 0.0040 15 6 2.3752 -6.0073 -0.1299 16 7 2.3985 -6.8727 -1.1195 17 7 3.3247 -7.7428 -0.9346 18 7 3.9505 -7.5031 0.1666 19 7 3.3589 -6.3590 0.7300 20 6 3.7264 -5.6924 1.9818 21 6 3.4534 -6.6153 3.1413 22 6 2.2792 -6.4929 3.8605 23 6 2.0267 -7.3424 4.9214 24 6 2.9526 -8.3082 5.2690 25 6 4.1292 -8.4272 4.5531 26 6 4.3795 -7.5807 3.4894 27 6 2.2448 -3.6629 -0.0117 28 1 -0.4851 0.8401 0.0004 29 1 0.9941 -2.4951 2.1331 30 1 -0.3653 -1.7857 1.2282 31 1 -0.9382 -4.0290 2.1681 32 1 -0.9957 -4.0190 0.3884 33 1 1.3391 -4.9946 2.0963 34 1 0.1895 -6.0290 1.2151 35 1 4.7864 -5.4391 1.9608 36 1 3.1375 -4.7824 2.0951 37 1 1.5573 -5.7362 3.5910 38 1 1.1073 -7.2496 5.4805 39 1 2.7565 -8.9701 6.0996 40 1 4.8523 -9.1821 4.8245 41 1 5.2990 -7.6734 2.9303 42 1 2.8623 -3.6100 -0.9083 43 1 2.8810 -3.6004 0.8713 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929058607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:37 Heat of formation + Delta-G solvation = 154.694744 kcal Electronic energy + Delta-G solvation = -26480.459999 eV Core-core repulsion = 22949.456805 eV Total energy + Delta-G solvation = -3531.003193 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.160 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.83324 -39.65807 -38.81331 -35.37658 -34.07936 -32.37750 -31.69901 -31.21622 -30.42672 -30.14185 -27.36882 -25.25794 -24.23536 -23.21025 -22.93119 -21.92766 -21.56126 -21.25017 -19.18140 -17.55797 -17.24458 -16.71441 -16.43484 -15.80104 -15.56517 -15.32342 -14.74025 -14.50590 -14.37017 -13.70748 -13.62340 -13.53294 -13.09243 -12.85346 -12.83678 -12.70989 -12.57471 -12.16330 -12.01819 -11.70321 -11.32436 -11.09572 -11.00161 -10.88998 -10.74545 -10.42967 -10.36542 -10.14644 -9.91407 -9.74440 -9.47109 -9.20247 -9.17627 -8.98892 -8.62802 -8.42275 -6.14629 -4.22291 0.82273 1.12466 1.15721 2.03134 2.50409 3.21967 3.29403 3.29877 3.38911 3.56928 4.06395 4.29150 4.32275 4.66920 4.69301 4.78576 4.95297 5.06638 5.11028 5.17201 5.19612 5.29182 5.31153 5.44564 5.50540 5.58422 5.67357 5.72465 5.76883 5.84694 6.06229 6.10544 6.15061 6.22325 6.24112 6.32586 6.38064 6.58690 6.67559 6.73372 7.03224 7.10966 7.31487 7.56629 7.80800 7.92673 8.21795 8.73409 8.80184 9.43586 10.91512 Molecular weight = 313.16amu Principal moments of inertia in cm(-1) A = 0.015062 B = 0.004114 C = 0.003760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.484521 B = 6804.724417 C = 7444.308287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.068 3.932 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.058 3.942 10 H 0.044 0.956 11 C -0.115 4.115 12 C -0.117 4.117 13 C 0.056 3.944 14 N -0.449 5.449 15 C 0.429 3.571 16 N -0.313 5.313 17 N -0.045 5.045 18 N -0.091 5.091 19 N -0.396 5.396 20 C 0.152 3.848 21 C -0.116 4.116 22 C -0.101 4.101 23 C -0.121 4.121 24 C -0.108 4.108 25 C -0.124 4.124 26 C -0.084 4.084 27 C 0.064 3.936 28 H 0.262 0.738 29 H 0.034 0.966 30 H 0.099 0.901 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.041 0.959 34 H 0.071 0.929 35 H 0.109 0.891 36 H 0.120 0.880 37 H 0.130 0.870 38 H 0.127 0.873 39 H 0.124 0.876 40 H 0.125 0.875 41 H 0.127 0.873 42 H 0.073 0.927 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.243 -12.056 11.410 17.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.135 4.135 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.560 4.560 8 H 0.074 0.926 9 C 0.039 3.961 10 H 0.062 0.938 11 C -0.153 4.153 12 C -0.155 4.155 13 C -0.071 4.071 14 N -0.176 5.176 15 C 0.064 3.936 16 N -0.166 5.166 17 N -0.041 5.041 18 N -0.077 5.077 19 N -0.198 5.198 20 C 0.030 3.970 21 C -0.117 4.117 22 C -0.120 4.120 23 C -0.139 4.139 24 C -0.126 4.126 25 C -0.142 4.142 26 C -0.103 4.103 27 C -0.062 4.062 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.118 0.882 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.059 0.941 34 H 0.089 0.911 35 H 0.128 0.872 36 H 0.138 0.862 37 H 0.148 0.852 38 H 0.145 0.855 39 H 0.142 0.858 40 H 0.143 0.857 41 H 0.145 0.855 42 H 0.092 0.908 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 4.262 -13.033 10.301 17.150 hybrid contribution 0.825 1.644 1.278 2.240 sum 5.087 -11.389 11.579 17.019 Atomic orbital electron populations 1.69861 1.05857 1.26737 1.49759 1.24893 0.94848 0.99035 0.94684 0.86587 0.79785 0.83327 0.78272 1.20554 1.21140 1.19965 1.21002 0.92835 0.90159 1.52000 0.92647 1.18715 0.92314 0.89420 0.95634 0.93808 1.21746 1.00344 0.94807 0.98371 1.21736 0.96782 0.95393 1.01614 1.22543 0.95705 1.01057 0.87793 1.59345 1.19181 0.99240 1.39832 1.24155 0.87585 0.94552 0.87321 1.74785 1.17145 1.03443 1.21236 1.78055 1.01529 1.16371 1.08175 1.82375 1.19034 1.00021 1.06307 1.52756 1.25504 1.22217 1.19349 1.21172 1.04265 0.93973 0.77565 1.19754 0.96201 0.98710 0.97043 1.21323 0.96060 0.99270 0.95341 1.21168 0.99686 0.95692 0.97394 1.21264 0.94020 0.97924 0.99433 1.21169 0.97654 0.99401 0.95931 1.21097 0.99006 0.93934 0.96262 1.22784 0.97247 0.85943 1.00192 0.92757 0.94695 0.88234 0.92168 0.91018 0.94073 0.91087 0.87243 0.86206 0.85248 0.85544 0.85828 0.85685 0.85484 0.90826 0.94779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.32 11.36 55.43 0.63 -22.69 16 2 C 0.07 1.73 5.31 -17.82 -0.09 1.64 16 3 Si 0.89 19.92 29.54 -169.99 -5.02 14.90 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.52 -12.98 8.56 -34.44 -0.29 -13.27 16 8 H 0.06 1.36 7.74 -52.49 -0.41 0.95 16 9 C 0.06 1.30 2.26 -91.69 -0.21 1.09 16 10 H 0.04 1.11 8.14 -51.93 -0.42 0.69 16 11 C -0.11 -2.32 5.03 -26.61 -0.13 -2.45 16 12 C -0.12 -1.92 6.09 -26.65 -0.16 -2.09 16 13 C 0.06 0.84 5.14 -3.83 -0.02 0.82 16 14 N -0.45 -7.93 4.68 -174.89 -0.82 -8.75 16 15 C 0.43 7.55 6.71 -320.41 -2.15 5.40 16 16 N -0.31 -6.06 12.19 30.10 0.37 -5.70 16 17 N -0.05 -0.85 13.38 60.35 0.81 -0.04 16 18 N -0.09 -1.52 13.93 60.35 0.84 -0.68 16 19 N -0.40 -6.10 3.67 -63.04 -0.23 -6.33 16 20 C 0.15 1.86 5.63 -5.20 -0.03 1.83 16 21 C -0.12 -1.32 5.46 -104.63 -0.57 -1.89 16 22 C -0.10 -1.10 9.43 -39.58 -0.37 -1.47 16 23 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 24 C -0.11 -0.95 10.05 -39.58 -0.40 -1.35 16 25 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 26 C -0.08 -0.89 9.73 -39.59 -0.39 -1.27 16 27 C 0.06 1.21 4.40 -3.83 -0.02 1.19 16 28 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 29 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.10 2.32 6.16 -51.93 -0.32 2.00 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.04 0.56 2.93 -51.93 -0.15 0.41 16 34 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 35 H 0.11 1.15 8.13 -51.93 -0.42 0.73 16 36 H 0.12 1.49 3.87 -51.93 -0.20 1.29 16 37 H 0.13 1.35 5.64 -52.48 -0.30 1.06 16 38 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 39 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 40 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 42 H 0.07 1.47 8.10 -51.93 -0.42 1.05 16 43 H 0.03 0.59 5.59 -51.92 -0.29 0.30 16 LS Contribution 343.33 15.07 5.17 5.17 Total: -1.00 -28.12 343.33 -9.33 -37.45 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -5.45 Total: 1.58 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: -5.63 Total: -14.92 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: 1.60 Total: -44.18 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.12 -9.33 -37.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929058607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.146 kcal (2) G-P(sol) polarization free energy of solvation -28.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds