Wall clock time and date at job start Tue Mar 31 2020 10:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35682 * 116.99997 * 2 1 4 4 N 1.31718 * 120.51808 * 0.02562 * 3 2 1 5 5 N 1.28080 * 123.42596 * 179.97438 * 4 3 2 6 6 C 1.31940 * 123.34916 * 0.02562 * 5 4 3 7 7 N 1.38865 * 120.55552 * 179.97438 * 6 5 4 8 8 C 1.46499 * 120.00085 * 0.02562 * 7 6 5 9 9 H 1.08996 * 109.41376 * 324.99113 * 8 7 6 10 10 C 1.52952 * 109.41648 * 84.85613 * 8 7 6 11 11 C 1.53236 * 109.40080 * 183.77208 * 10 8 7 12 12 C 1.51273 * 108.48448 * 305.26529 * 11 10 8 13 13 C 1.37872 * 120.84838 * 231.36558 * 12 11 10 14 14 N 1.31523 * 119.99719 * 180.02562 * 13 12 11 15 15 Si 1.86796 * 120.00280 * 0.02562 * 13 12 11 16 16 H 1.48503 * 109.47184 * 89.99847 * 15 13 12 17 17 H 1.48496 * 109.47202 * 209.99696 * 15 13 12 18 18 H 1.48493 * 109.47173 * 330.00014 * 15 13 12 19 19 C 1.51268 * 118.29790 * 51.38735 * 12 11 10 20 20 C 1.52966 * 109.40815 * 205.13730 * 8 7 6 21 21 C 1.41389 * 118.87924 * 0.25464 * 6 5 4 22 22 C 1.39872 * 122.74263 * 180.23606 * 21 6 5 23 23 C 1.36398 * 119.39915 * 179.71683 * 22 21 6 24 24 C 1.39264 * 121.03902 * 359.79098 * 23 22 21 25 25 C 1.36377 * 121.03230 * 359.97438 * 24 23 22 26 26 C 1.39930 * 119.39805 * 359.97438 * 25 24 23 27 27 H 1.09003 * 109.46442 * 299.99889 * 1 2 3 28 28 H 1.08989 * 109.47182 * 59.99501 * 1 2 3 29 29 H 1.08995 * 109.47001 * 179.97438 * 1 2 3 30 30 H 0.97005 * 119.99654 * 180.02562 * 7 6 5 31 31 H 1.09005 * 109.47983 * 303.68398 * 10 8 7 32 32 H 1.09002 * 109.48349 * 63.72021 * 10 8 7 33 33 H 1.08999 * 109.62215 * 185.58921 * 11 10 8 34 34 H 1.09000 * 109.84423 * 65.07522 * 11 10 8 35 35 H 0.96999 * 119.99717 * 180.02562 * 14 13 12 36 36 H 1.09000 * 109.62551 * 188.94111 * 19 12 11 37 37 H 1.08998 * 109.78237 * 68.46152 * 19 12 11 38 38 H 1.08995 * 109.48574 * 296.27192 * 20 8 7 39 39 H 1.09001 * 109.48212 * 56.30261 * 20 8 7 40 40 H 1.08003 * 120.29928 * 359.46389 * 22 21 6 41 41 H 1.08002 * 119.47998 * 179.76267 * 23 22 21 42 42 H 1.07991 * 119.48407 * 179.97438 * 24 23 22 43 43 H 1.08002 * 120.30550 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 7 1.3377 2.3201 0.0005 5 7 1.8605 3.4893 0.0010 6 6 3.1627 3.7015 0.0006 7 7 3.6671 4.9953 0.0006 8 6 2.7511 6.1387 0.0018 9 1 1.8670 5.8951 -0.5874 10 6 2.3334 6.4541 1.4389 11 6 1.3032 7.5884 1.4322 12 6 1.8894 8.7643 0.6825 13 6 1.8981 10.0251 1.2404 14 7 2.4116 11.0357 0.5734 15 14 1.1805 10.2980 2.9433 16 1 2.2425 10.1098 3.9640 17 1 0.6420 11.6787 3.0381 18 1 0.0865 9.3226 3.1816 19 6 2.4653 8.5215 -0.6950 20 6 3.4521 7.3522 -0.6112 21 6 4.0358 2.5895 -0.0060 22 6 5.4283 2.7209 -0.0021 23 6 6.2066 1.6008 -0.0030 24 6 5.6364 0.3302 -0.0035 25 6 4.2825 0.1672 -0.0025 26 6 3.4548 1.2955 -0.0004 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8898 29 1 -0.3633 -1.0276 -0.0005 30 1 4.6260 5.1420 0.0000 31 1 1.8924 5.5664 1.8924 32 1 3.2082 6.7594 2.0131 33 1 1.0770 7.8835 2.4568 34 1 0.3907 7.2566 0.9369 35 1 2.4181 11.9227 0.9661 36 1 2.9859 9.4160 -1.0370 37 1 1.6641 8.2752 -1.3917 38 1 4.2998 7.6359 0.0125 39 1 3.8047 7.1014 -1.6117 40 1 5.8832 3.7005 -0.0024 41 1 7.2820 1.7008 -0.0039 42 1 6.2765 -0.5396 -0.0047 43 1 3.8528 -0.8236 -0.0033 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157055152.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:24:55 Heat of formation + Delta-G solvation = 11.436493 kcal Electronic energy + Delta-G solvation = -25723.519406 eV Core-core repulsion = 22154.011318 eV Total energy + Delta-G solvation = -3569.508088 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.43557 -39.84515 -39.26492 -38.53798 -36.23284 -34.01735 -32.79847 -32.17033 -31.52715 -30.65298 -28.68071 -28.26310 -25.42642 -25.08448 -23.79203 -23.25905 -22.68704 -21.27071 -19.90122 -19.25875 -18.78566 -18.15816 -17.47868 -17.23756 -16.43996 -16.40070 -15.94719 -15.62518 -15.59350 -15.12629 -15.01312 -14.86944 -14.56160 -14.26289 -13.95850 -13.61334 -13.48875 -13.19373 -13.02391 -12.83693 -12.75211 -12.62816 -12.58107 -12.46347 -12.10349 -11.87946 -11.80785 -11.57718 -11.25424 -10.86601 -10.57633 -10.53902 -10.31560 -10.31067 -9.95666 -8.47749 -8.17174 -6.10643 -0.43422 -0.34975 0.89141 1.36986 1.41488 1.50139 1.91178 2.06642 2.15223 2.41080 2.96921 3.11225 3.22425 3.56664 3.58416 3.81724 3.95999 4.07826 4.22306 4.25648 4.29493 4.41397 4.42292 4.52287 4.57991 4.68793 4.71908 4.78459 4.90305 4.95120 4.97894 5.02497 5.09020 5.22030 5.24957 5.29067 5.36013 5.40804 5.57000 5.62571 5.76150 5.79727 5.82389 6.06359 6.14906 6.35592 6.61742 6.94586 7.47481 8.10023 8.93515 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.018836 B = 0.003471 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.174472 B = 8065.936124 C = 8929.619432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.306 6.306 3 C 0.227 3.773 4 N -0.314 5.314 5 N -0.349 5.349 6 C 0.351 3.649 7 N -0.689 5.689 8 C 0.180 3.820 9 H 0.060 0.940 10 C -0.102 4.102 11 C -0.014 4.014 12 C -0.497 4.497 13 C 0.027 3.973 14 N -0.928 5.928 15 Si 0.937 3.063 16 H -0.271 1.271 17 H -0.291 1.291 18 H -0.261 1.261 19 C 0.010 3.990 20 C -0.101 4.101 21 C -0.104 4.104 22 C -0.096 4.096 23 C -0.091 4.091 24 C -0.089 4.089 25 C -0.089 4.089 26 C -0.071 4.071 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.134 0.866 30 H 0.416 0.584 31 H 0.037 0.963 32 H 0.052 0.948 33 H 0.029 0.971 34 H 0.012 0.988 35 H 0.263 0.737 36 H 0.034 0.966 37 H -0.003 1.003 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.152 0.848 41 H 0.170 0.830 42 H 0.171 0.829 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.143 -24.505 -0.784 26.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.209 6.209 3 C 0.025 3.975 4 N -0.160 5.160 5 N -0.194 5.194 6 C 0.097 3.903 7 N -0.324 5.324 8 C 0.075 3.925 9 H 0.078 0.922 10 C -0.141 4.141 11 C -0.052 4.052 12 C -0.516 4.516 13 C -0.172 4.172 14 N -0.568 5.568 15 Si 0.764 3.236 16 H -0.197 1.197 17 H -0.217 1.217 18 H -0.186 1.186 19 C -0.028 4.028 20 C -0.139 4.139 21 C -0.113 4.113 22 C -0.116 4.116 23 C -0.110 4.110 24 C -0.108 4.108 25 C -0.110 4.110 26 C -0.078 4.078 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.152 0.848 30 H 0.256 0.744 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.048 0.952 34 H 0.031 0.969 35 H 0.073 0.927 36 H 0.053 0.947 37 H 0.015 0.985 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.170 0.830 41 H 0.188 0.812 42 H 0.189 0.811 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 7.527 -23.779 -0.784 24.954 hybrid contribution 0.519 0.488 0.753 1.036 sum 8.046 -23.291 -0.031 24.642 Atomic orbital electron populations 1.23102 0.75935 1.04987 1.01923 1.86098 1.23937 1.22471 1.88424 1.21482 0.90244 0.87252 0.98509 1.72104 1.32587 0.93933 1.17383 1.72207 1.10321 1.12901 1.23986 1.20233 0.91050 0.86998 0.92051 1.44592 1.09355 1.00487 1.78011 1.20612 0.91803 0.83854 0.96201 0.92196 1.21758 0.99118 0.96994 0.96267 1.19706 0.94949 0.94226 0.96341 1.20575 1.36998 0.92292 1.01766 1.25521 0.95509 0.95535 1.00612 1.69953 1.46796 1.00647 1.39385 0.85858 0.79655 0.76790 0.81324 1.19666 1.21700 1.18602 1.19279 0.94156 0.94398 0.94955 1.21709 0.98821 0.94499 0.98895 1.18535 0.96134 0.90898 1.05738 1.21105 0.89979 1.01704 0.98846 1.21505 1.02240 0.91333 0.95925 1.21540 0.94365 0.99196 0.95654 1.21165 0.94115 0.97497 0.98180 1.18139 0.90827 0.95022 1.03854 0.93142 0.93053 0.84826 0.74434 0.94464 0.92932 0.95249 0.96932 0.92732 0.94715 0.98506 0.92396 0.92408 0.83043 0.81213 0.81136 0.82841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 10.41 113.37 1.18 1.90 16 2 O -0.31 -7.78 9.89 -90.00 -0.89 -8.68 16 3 C 0.23 7.00 7.63 85.45 0.65 7.65 16 4 N -0.31 -11.62 10.33 -169.57 -1.75 -13.37 16 5 N -0.35 -13.74 10.31 -54.25 -0.56 -14.30 16 6 C 0.35 11.70 7.60 133.81 1.02 12.71 16 7 N -0.69 -21.59 5.17 -323.14 -1.67 -23.26 16 8 C 0.18 6.98 2.38 44.96 0.11 7.09 16 9 H 0.06 2.63 7.57 -2.39 -0.02 2.62 16 10 C -0.10 -4.30 5.51 30.66 0.17 -4.13 16 11 C -0.01 -0.68 5.60 30.11 0.17 -0.51 16 12 C -0.50 -26.46 5.51 -16.17 -0.09 -26.55 16 13 C 0.03 1.47 5.46 84.65 0.46 1.94 16 14 N -0.93 -54.21 12.73 21.45 0.27 -53.94 16 15 Si 0.94 43.99 27.27 68.60 1.87 45.86 16 16 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 17 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 18 H -0.26 -11.93 6.46 99.48 0.64 -11.29 16 19 C 0.01 0.51 5.97 30.11 0.18 0.69 16 20 C -0.10 -4.04 5.40 30.66 0.17 -3.87 16 21 C -0.10 -2.77 5.76 -21.22 -0.12 -2.90 16 22 C -0.10 -1.73 9.55 22.24 0.21 -1.52 16 23 C -0.09 -1.07 9.95 22.09 0.22 -0.85 16 24 C -0.09 -1.02 9.95 22.08 0.22 -0.80 16 25 C -0.09 -1.59 9.63 22.25 0.21 -1.38 16 26 C -0.07 -1.89 5.76 -21.24 -0.12 -2.01 16 27 H 0.05 1.12 8.12 -2.39 -0.02 1.10 16 28 H 0.05 1.13 8.12 -2.39 -0.02 1.11 16 29 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.42 10.23 6.90 -92.70 -0.64 9.59 16 31 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.03 1.39 4.78 -2.39 -0.01 1.38 16 34 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 36 H 0.03 1.90 7.07 -2.39 -0.02 1.88 16 37 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 38 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.15 2.09 6.63 -2.91 -0.02 2.07 16 41 H 0.17 0.75 8.06 -2.91 -0.02 0.73 16 42 H 0.17 0.65 8.06 -2.92 -0.02 0.63 16 43 H 0.15 2.21 7.75 -2.91 -0.02 2.18 16 Total: -1.00 -71.09 346.82 2.24 -68.85 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: 0.34 Total: 11.39 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: 4.63 Total: -12.55 kcal Atomic # 7 Polarization: -101.16 SS G_CDS: -3.71 Total: -104.87 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: -0.89 Total: -8.68 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.87 Total: 45.86 kcal Total: -71.09 2.24 -68.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157055152.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.288 kcal (2) G-P(sol) polarization free energy of solvation -71.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds