Wall clock time and date at job start Tue Mar 31 2020 10:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47032 * 2 1 4 4 H 1.08998 * 109.47001 * 305.72432 * 3 2 1 5 5 C 1.50705 * 109.47119 * 185.72966 * 3 2 1 6 6 H 1.08002 * 119.99549 * 240.00193 * 5 3 2 7 7 C 1.37875 * 120.00199 * 59.99543 * 5 3 2 8 8 N 1.31518 * 119.99834 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00129 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.46957 * 60.00139 * 9 7 5 11 11 H 1.48499 * 109.47462 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47360 * 300.00299 * 9 7 5 13 13 N 1.46897 * 109.47214 * 65.72685 * 3 2 1 14 14 C 1.46903 * 111.00136 * 206.28533 * 13 3 2 15 15 H 1.09003 * 110.67101 * 330.61551 * 14 13 3 16 16 C 1.54886 * 110.75829 * 207.37607 * 14 13 3 17 17 C 1.54260 * 104.19602 * 279.63138 * 16 14 13 18 18 H 1.08998 * 110.03619 * 95.72782 * 17 16 14 19 19 C 1.50704 * 110.03196 * 217.10324 * 17 16 14 20 20 O 1.20830 * 119.99602 * 31.82857 * 19 17 16 21 21 O 1.34223 * 120.00368 * 211.82445 * 19 17 16 22 22 C 1.45201 * 117.00103 * 180.02562 * 21 19 17 23 23 C 1.53873 * 106.60018 * 336.38697 * 17 16 14 24 24 H 1.09008 * 110.03231 * 119.33419 * 23 17 16 25 25 C 1.50703 * 110.03478 * 240.71621 * 23 17 16 26 26 O 1.20826 * 119.99632 * 86.48219 * 25 23 17 27 27 O 1.34228 * 119.99663 * 266.47976 * 25 23 17 28 28 C 1.45206 * 116.99275 * 180.02562 * 27 25 23 29 29 C 1.54757 * 106.65219 * 0.02562 * 23 17 16 30 30 H 1.09007 * 109.46984 * 54.81510 * 1 2 3 31 31 H 1.09000 * 109.47265 * 174.80473 * 1 2 3 32 32 H 1.08990 * 109.47314 * 294.81091 * 1 2 3 33 33 H 1.08997 * 109.47671 * 239.99718 * 2 1 3 34 34 H 1.09005 * 109.46900 * 119.99668 * 2 1 3 35 35 H 0.97004 * 119.99601 * 179.97438 * 8 7 5 36 36 H 1.00895 * 111.00147 * 330.24316 * 13 3 2 37 37 H 1.08997 * 110.48359 * 38.31483 * 16 14 13 38 38 H 1.09000 * 110.48591 * 160.81790 * 16 14 13 39 39 H 1.08996 * 109.47090 * 60.00017 * 22 21 19 40 40 H 1.09006 * 109.46927 * 180.02562 * 22 21 19 41 41 H 1.09001 * 109.46802 * 299.99921 * 22 21 19 42 42 H 1.09003 * 109.46715 * 179.97438 * 28 27 25 43 43 H 1.09000 * 109.47004 * 299.99274 * 28 27 25 44 44 H 1.08991 * 109.47411 * 60.00025 * 28 27 25 45 45 H 1.08996 * 110.49908 * 265.00843 * 29 23 17 46 46 H 1.08996 * 110.69384 * 142.21296 * 29 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5953 1.9850 -0.8343 5 6 3.5403 1.4449 -0.1419 6 1 4.1548 1.8862 0.6289 7 6 4.1284 0.8836 -1.2554 8 7 3.3800 0.3466 -2.1942 9 14 5.9881 0.8860 -1.4309 10 1 6.5935 0.1464 -0.2943 11 1 6.3658 0.2280 -2.7075 12 1 6.4837 2.2858 -1.4306 13 7 1.6664 2.0940 1.2625 14 6 1.5558 3.5488 1.0917 15 1 2.2271 3.8961 0.3063 16 6 1.8453 4.2817 2.4251 17 6 0.5227 4.1727 3.2116 18 1 0.5619 3.3221 3.8921 19 6 0.2766 5.4418 3.9862 20 8 0.6628 6.5003 3.5499 21 8 -0.3716 5.3963 5.1606 22 6 -0.5737 6.6574 5.8513 23 6 -0.5917 3.9658 2.1710 24 1 -1.0943 3.0145 2.3463 25 6 -1.5857 5.0960 2.2473 26 8 -1.3937 6.1124 1.6228 27 8 -2.6841 4.9734 3.0090 28 6 -3.5978 6.1017 3.0343 29 6 0.0935 3.9554 0.7834 30 1 -0.3633 0.5922 -0.8400 31 1 -0.3634 -1.0234 -0.0931 32 1 -0.3633 0.4312 0.9327 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.7938 -0.0479 -2.9778 36 1 0.8100 1.7069 1.6296 37 1 2.6523 3.7865 2.9651 38 1 2.0963 5.3261 2.2397 39 1 -1.1573 7.3278 5.2204 40 1 -1.1081 6.4790 6.7845 41 1 0.3930 7.1120 6.0678 42 1 -4.4410 5.8717 3.6857 43 1 -3.0773 6.9823 3.4106 44 1 -3.9612 6.2977 2.0257 45 1 0.0604 4.9478 0.3340 46 1 -0.3762 3.2226 0.1274 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173571663.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:06:44 Heat of formation + Delta-G solvation = -176.057551 kcal Electronic energy + Delta-G solvation = -28070.763106 eV Core-core repulsion = 24153.522995 eV Total energy + Delta-G solvation = -3917.240111 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.177 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.39868 -40.02599 -38.35680 -36.53371 -36.42172 -35.17382 -32.13705 -31.05248 -29.61170 -28.65792 -27.64076 -27.16459 -25.89436 -23.16676 -22.79936 -21.80524 -19.84741 -19.62673 -19.52118 -18.32416 -17.34490 -17.08449 -16.85823 -16.18063 -15.95331 -15.67248 -15.31772 -14.92883 -14.25414 -14.10718 -13.71623 -13.64355 -13.54883 -13.05036 -12.81140 -12.76368 -12.33128 -12.27174 -12.22245 -11.75696 -11.70189 -11.30460 -11.07142 -10.99632 -10.93524 -10.87216 -10.84822 -10.82202 -10.74129 -10.64285 -10.43003 -10.24056 -9.95044 -9.69347 -9.56416 -9.09558 -8.33954 -7.28435 -5.95972 -4.00054 1.98693 2.14040 2.46452 2.73484 3.35840 3.40113 3.43531 4.29554 4.45561 4.51038 4.63609 4.82536 4.88839 4.93171 4.96244 5.01228 5.17838 5.23616 5.31501 5.33052 5.34591 5.39278 5.42786 5.62530 5.69654 6.11118 6.13808 6.14105 6.18775 6.23807 6.25154 6.27740 6.38969 6.51277 6.62133 6.82240 7.07077 7.16036 7.48346 7.63528 7.69713 7.77479 7.92452 8.27542 8.39268 8.73473 9.07803 9.65206 11.09249 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.019684 B = 0.003741 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.168273 B = 7483.410505 C = 8180.893795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C 0.218 3.782 4 H 0.005 0.995 5 C -0.494 4.494 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.279 1.279 13 N -0.675 5.675 14 C 0.100 3.900 15 H 0.099 0.901 16 C -0.104 4.104 17 C -0.067 4.067 18 H 0.120 0.880 19 C 0.450 3.550 20 O -0.486 6.486 21 O -0.355 6.355 22 C 0.035 3.965 23 C -0.069 4.069 24 H 0.115 0.885 25 C 0.451 3.549 26 O -0.485 6.485 27 O -0.355 6.355 28 C 0.035 3.965 29 C -0.144 4.144 30 H 0.042 0.958 31 H 0.037 0.963 32 H 0.034 0.966 33 H 0.099 0.901 34 H 0.041 0.959 35 H 0.260 0.740 36 H 0.318 0.682 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.057 0.943 40 H 0.100 0.900 41 H 0.062 0.938 42 H 0.101 0.899 43 H 0.058 0.942 44 H 0.062 0.938 45 H 0.088 0.912 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.655 7.936 13.147 19.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C 0.111 3.889 4 H 0.023 0.977 5 C -0.533 4.533 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.306 5.306 14 C -0.012 4.012 15 H 0.118 0.882 16 C -0.142 4.142 17 C -0.087 4.087 18 H 0.138 0.862 19 C 0.292 3.708 20 O -0.372 6.372 21 O -0.271 6.271 22 C -0.059 4.059 23 C -0.089 4.089 24 H 0.133 0.867 25 C 0.293 3.707 26 O -0.370 6.370 27 O -0.271 6.271 28 C -0.059 4.059 29 C -0.184 4.184 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.118 0.882 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.136 0.864 37 H 0.109 0.891 38 H 0.102 0.898 39 H 0.076 0.924 40 H 0.119 0.881 41 H 0.081 0.919 42 H 0.119 0.881 43 H 0.077 0.923 44 H 0.081 0.919 45 H 0.107 0.893 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.839 8.545 12.900 19.483 hybrid contribution -0.148 0.446 -0.543 0.719 sum -11.987 8.991 12.357 19.422 Atomic orbital electron populations 1.21894 0.99664 0.99777 0.99452 1.21787 0.91155 1.00456 1.03159 1.19199 0.95476 0.89911 0.84277 0.97718 1.21183 0.91262 1.36609 1.04221 0.92008 1.24946 0.97995 0.95647 0.95880 1.69860 1.34738 1.39488 1.09528 0.86623 0.85886 0.78150 0.77077 1.20347 1.21564 1.20426 1.60704 1.36605 1.00893 1.32358 1.22359 0.92793 0.90188 0.95852 0.88248 1.22620 0.93423 1.01991 0.96215 1.21727 0.97335 0.94041 0.95587 0.86224 1.23935 0.74852 0.92231 0.79793 1.90696 1.46831 1.31934 1.67700 1.86561 1.70157 1.36431 1.33977 1.23231 1.02104 0.84097 0.96456 1.21785 0.92169 0.96476 0.98436 0.86650 1.23847 0.81282 0.89241 0.76379 1.90695 1.74565 1.30243 1.41508 1.86561 1.32608 1.44031 1.63942 1.23237 0.91886 0.87826 1.02935 1.23355 0.98270 1.04086 0.92661 0.93878 0.94388 0.94665 0.88232 0.94005 0.93058 0.86413 0.89111 0.89804 0.92409 0.88119 0.91877 0.88081 0.92344 0.91886 0.89349 0.90196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.66 37.16 0.36 -2.33 16 2 C -0.13 -2.81 5.35 -26.73 -0.14 -2.95 16 3 C 0.22 5.04 1.87 -68.86 -0.13 4.91 16 4 H 0.01 0.13 7.83 -51.93 -0.41 -0.28 16 5 C -0.49 -12.98 8.63 -34.44 -0.30 -13.28 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.50 5.29 -17.82 -0.09 1.40 16 8 N -0.90 -24.79 11.29 55.43 0.63 -24.17 16 9 Si 0.89 21.11 29.54 -169.99 -5.02 16.08 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.68 -12.69 6.17 -98.88 -0.61 -13.30 16 14 C 0.10 1.71 3.05 -65.73 -0.20 1.51 16 15 H 0.10 1.96 7.72 -51.93 -0.40 1.56 16 16 C -0.10 -1.59 6.00 -25.08 -0.15 -1.74 16 17 C -0.07 -0.91 3.38 -90.66 -0.31 -1.22 16 18 H 0.12 1.37 8.14 -51.93 -0.42 0.95 16 19 C 0.45 6.56 5.08 36.01 0.18 6.75 16 20 O -0.49 -8.40 14.81 -22.53 -0.33 -8.73 16 21 O -0.35 -4.47 10.56 -39.24 -0.41 -4.88 16 22 C 0.03 0.33 10.56 101.05 1.07 1.40 16 23 C -0.07 -0.94 2.99 -90.39 -0.27 -1.21 16 24 H 0.12 1.31 8.14 -51.92 -0.42 0.88 16 25 C 0.45 6.62 5.06 36.01 0.18 6.81 16 26 O -0.48 -8.45 14.81 -22.52 -0.33 -8.78 16 27 O -0.35 -4.49 10.57 -39.25 -0.41 -4.91 16 28 C 0.04 0.33 10.56 101.05 1.07 1.40 16 29 C -0.14 -2.22 5.82 -24.82 -0.14 -2.37 16 30 H 0.04 0.78 8.14 -51.92 -0.42 0.36 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.03 0.54 6.64 -51.93 -0.34 0.20 16 33 H 0.10 2.52 5.94 -51.93 -0.31 2.22 16 34 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 36 H 0.32 5.32 5.90 -39.29 -0.23 5.09 16 37 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 38 H 0.08 1.36 6.91 -51.93 -0.36 1.00 16 39 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 40 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.59 8.13 -51.93 -0.42 0.16 16 42 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 44 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 45 H 0.09 1.47 6.90 -51.93 -0.36 1.11 16 46 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 372.15 15.07 5.61 5.61 Total: -1.00 -31.05 372.15 -7.22 -38.27 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -7.45 Total: 5.72 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: 1.12 Total: -0.92 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: 0.02 Total: -37.47 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -1.50 Total: -27.30 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.05 -7.22 -38.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173571663.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.783 kcal (2) G-P(sol) polarization free energy of solvation -31.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds