Wall clock time and date at job start Tue Mar 31 2020 11:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47357 * 2 1 4 4 C 1.50706 * 109.46965 * 120.00282 * 2 1 3 5 5 C 1.38338 * 119.38478 * 274.97725 * 4 2 1 6 6 C 1.38381 * 119.49948 * 180.02562 * 5 4 2 7 7 C 1.39960 * 118.36787 * 359.72809 * 6 5 4 8 8 C 1.43197 * 120.61454 * 180.28768 * 7 6 5 9 9 N 6.80428 * 109.42286 * 121.05957 * 2 1 3 10 10 C 1.40551 * 118.77331 * 0.52747 * 7 6 5 11 11 N 1.38405 * 119.82290 * 179.73552 * 10 7 6 12 12 C 1.46898 * 111.00025 * 77.44147 * 11 10 7 13 13 C 1.50702 * 109.47211 * 66.30575 * 12 11 10 14 14 H 1.08006 * 119.99696 * 354.80054 * 13 12 11 15 15 C 1.37870 * 120.00383 * 174.52149 * 13 12 11 16 16 N 1.31522 * 119.99890 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00347 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46912 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46971 * 119.99657 * 17 15 13 20 20 H 1.48497 * 109.47519 * 240.00159 * 17 15 13 21 21 C 1.46900 * 111.00062 * 201.39754 * 11 10 7 22 22 C 1.54273 * 110.02974 * 181.05574 * 21 11 10 23 23 C 1.54887 * 104.19682 * 217.10256 * 22 21 11 24 24 C 1.54893 * 102.74602 * 37.94738 * 23 22 21 25 25 C 1.53873 * 110.03059 * 63.89438 * 21 11 10 26 26 N 1.31878 * 119.38902 * 94.99644 * 4 2 1 27 27 H 1.08999 * 109.47060 * 300.00295 * 1 2 3 28 28 H 1.08997 * 109.46931 * 59.99905 * 1 2 3 29 29 H 1.08996 * 109.47320 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47060 * 239.99705 * 2 1 3 31 31 H 1.08996 * 109.46857 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.46782 * 300.00002 * 3 2 1 33 33 H 1.09006 * 109.46890 * 59.99789 * 3 2 1 34 34 H 1.07998 * 120.24908 * 359.97438 * 5 4 2 35 35 H 1.07998 * 120.81059 * 180.02562 * 6 5 4 36 36 H 1.09002 * 109.47674 * 306.30691 * 12 11 10 37 37 H 1.09004 * 109.47379 * 186.30691 * 12 11 10 38 38 H 0.97001 * 119.99775 * 179.97438 * 16 15 13 39 39 H 1.08998 * 110.01550 * 302.49863 * 21 11 10 40 40 H 1.09002 * 110.48862 * 335.78910 * 22 21 11 41 41 H 1.09007 * 110.47998 * 98.42889 * 22 21 11 42 42 H 1.08997 * 110.75737 * 279.63255 * 23 22 21 43 43 H 1.08992 * 110.91146 * 156.33288 * 23 22 21 44 44 H 1.08999 * 110.48665 * 203.37719 * 24 23 22 45 45 H 1.09002 * 110.48836 * 80.73386 * 24 23 22 46 46 H 1.09004 * 110.03182 * 238.56484 * 25 21 11 47 47 H 1.08994 * 110.03397 * 359.97438 * 25 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2305 5 6 2.1600 -0.0080 2.4154 6 6 2.6215 -0.6579 3.5465 7 6 2.9396 -2.0174 3.4492 8 6 3.4154 -2.7386 4.5911 9 7 3.7927 -3.3107 5.4970 10 6 2.7883 -2.6605 2.2086 11 7 3.1018 -4.0030 2.0864 12 6 2.0380 -4.8453 2.6493 13 6 0.7885 -4.6976 1.8198 14 1 0.7582 -3.9815 1.0118 15 6 -0.3140 -5.4807 2.0885 16 7 -0.2754 -6.3562 3.0692 17 14 -1.8630 -5.2971 1.0608 18 1 -1.6508 -4.2512 0.0281 19 1 -2.1740 -6.5897 0.3990 20 1 -2.9954 -4.9050 1.9378 21 6 3.3672 -4.3563 0.6855 22 6 3.6879 -5.8610 0.5716 23 6 4.7862 -5.9340 -0.5180 24 6 5.6411 -4.6757 -0.2264 25 6 4.6092 -3.6027 0.1781 26 7 2.3424 -1.9902 1.1576 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.9022 1.0399 2.4570 35 1 2.7289 -0.1302 4.4826 36 1 1.8326 -4.5351 3.6738 37 1 2.3576 -5.8874 2.6423 38 1 -1.0512 -6.9069 3.2585 39 1 2.5031 -4.1102 0.0685 40 1 4.0653 -6.2435 1.5200 41 1 2.8036 -6.4169 0.2598 42 1 4.3465 -5.8800 -1.5139 43 1 5.3825 -6.8398 -0.4093 44 1 6.1823 -4.3665 -1.1206 45 1 6.3340 -4.8667 0.5930 46 1 4.3479 -2.9914 -0.6858 47 1 5.0146 -2.9745 0.9712 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166535310.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:01 Heat of formation + Delta-G solvation = 40.718444 kcal Electronic energy + Delta-G solvation = -27289.344758 eV Core-core repulsion = 23856.939524 eV Total energy + Delta-G solvation = -3432.405233 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.185 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.90228 -39.62219 -37.82295 -36.81138 -35.76018 -34.48954 -33.28990 -30.95766 -29.78491 -28.96733 -28.00350 -27.48212 -25.81769 -24.58682 -23.37576 -21.59242 -21.29910 -20.48271 -19.79337 -18.51176 -17.94634 -17.29358 -17.09032 -16.42455 -16.04007 -15.83120 -15.42320 -15.01568 -14.81858 -14.68278 -14.57789 -14.30710 -14.15954 -14.14599 -13.86523 -13.48154 -13.36072 -13.16194 -13.10563 -12.74407 -12.71059 -12.47923 -12.24036 -12.18194 -11.99753 -11.94142 -11.90246 -11.77254 -11.71495 -11.64492 -11.54352 -11.34227 -10.76575 -10.66997 -10.36678 -10.05014 -9.03379 -8.21324 -6.37537 -0.25154 0.39102 1.31833 1.33779 1.45939 1.69956 2.03647 2.33909 2.73178 2.97031 3.06516 3.08376 3.43578 3.75045 3.82705 3.88966 4.08181 4.20176 4.26643 4.32372 4.35210 4.39021 4.61325 4.68585 4.73045 4.76761 4.85966 4.88821 4.91320 4.92053 5.00935 5.03354 5.06859 5.08030 5.13996 5.17042 5.23148 5.25886 5.31336 5.37512 5.42785 5.47802 5.52782 5.55344 5.63539 5.72060 5.89420 6.08035 6.46248 6.57564 6.78854 7.14353 7.33156 8.83890 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.008232 B = 0.006798 C = 0.005725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3400.471281 B = 4117.632334 C = 4889.446314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.047 4.047 3 C -0.138 4.138 4 C 0.174 3.826 5 C -0.193 4.193 6 C -0.003 4.003 7 C -0.131 4.131 8 C 0.292 3.708 9 N -0.470 5.470 10 C 0.379 3.621 11 N -0.494 5.494 12 C 0.217 3.783 13 C -0.542 4.542 14 H 0.071 0.929 15 C 0.015 3.985 16 N -0.927 5.927 17 Si 0.953 3.047 18 H -0.263 1.263 19 H -0.278 1.278 20 H -0.281 1.281 21 C 0.101 3.899 22 C -0.113 4.113 23 C -0.113 4.113 24 C -0.113 4.113 25 C -0.099 4.099 26 N -0.522 5.522 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.026 0.974 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.183 0.817 35 H 0.174 0.826 36 H -0.004 1.004 37 H 0.021 0.979 38 H 0.264 0.736 39 H 0.051 0.949 40 H 0.048 0.952 41 H 0.045 0.955 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.060 0.940 46 H 0.069 0.931 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.052 16.520 -9.281 19.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.066 4.066 3 C -0.195 4.195 4 C 0.033 3.967 5 C -0.213 4.213 6 C -0.030 4.030 7 C -0.140 4.140 8 C -0.022 4.022 9 N -0.147 5.147 10 C 0.145 3.855 11 N -0.212 5.212 12 C 0.094 3.906 13 C -0.581 4.581 14 H 0.089 0.911 15 C -0.185 4.185 16 N -0.567 5.567 17 Si 0.778 3.222 18 H -0.187 1.187 19 H -0.204 1.204 20 H -0.206 1.206 21 C -0.006 4.006 22 C -0.151 4.151 23 C -0.150 4.150 24 C -0.150 4.150 25 C -0.137 4.137 26 N -0.235 5.235 27 H 0.086 0.914 28 H 0.102 0.898 29 H 0.045 0.955 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.201 0.799 35 H 0.191 0.809 36 H 0.014 0.986 37 H 0.039 0.961 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.105 0.895 45 H 0.078 0.922 46 H 0.088 0.912 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.894 14.881 -8.298 18.380 hybrid contribution -1.815 -0.308 0.244 1.857 sum 5.079 14.574 -8.054 17.408 Atomic orbital electron populations 1.21784 0.93446 1.00987 1.03489 1.20188 0.96203 0.96854 0.93348 1.21890 1.01350 0.92462 1.03825 1.21942 0.89903 0.88423 0.96477 1.22084 1.04286 1.03443 0.91440 1.21824 0.90614 0.89708 1.00868 1.16816 1.13169 0.95244 0.88760 1.25498 0.92180 0.92357 0.92194 1.81101 1.11891 1.08750 1.12954 1.19792 0.86673 0.91030 0.87963 1.60050 1.40150 1.00378 1.20670 1.19424 0.86481 0.91495 0.93219 1.21958 0.98286 1.21105 1.16718 0.91111 1.25755 1.01906 0.94637 0.96178 1.70092 1.31338 1.24097 1.31168 0.85570 0.79375 0.78281 0.78953 1.18691 1.20410 1.20650 1.22043 0.97512 0.94783 0.86274 1.22323 0.98569 0.95217 0.99013 1.22431 0.96047 0.98585 0.97978 1.22299 0.96921 0.94430 1.01378 1.22056 0.94239 0.97623 0.99831 1.67780 1.13749 1.10252 1.31720 0.91370 0.89827 0.95519 0.90288 0.92192 0.90423 0.90402 0.79946 0.80876 0.98574 0.96093 0.92718 0.93074 0.93314 0.93594 0.90648 0.90526 0.89533 0.92153 0.91186 0.93336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 9.18 71.98 0.66 -2.26 16 2 C -0.05 -0.97 3.23 -11.54 -0.04 -1.00 16 3 C -0.14 -1.73 8.61 71.98 0.62 -1.11 16 4 C 0.17 4.75 5.79 42.58 0.25 4.99 16 5 C -0.19 -4.20 9.15 22.33 0.20 -3.99 16 6 C 0.00 -0.06 9.90 22.72 0.22 0.16 16 7 C -0.13 -4.76 5.65 -21.05 -0.12 -4.88 16 8 C 0.29 11.91 13.53 88.33 1.20 13.11 16 9 N -0.47 -20.76 18.54 19.00 0.35 -20.41 16 10 C 0.38 15.14 4.21 133.62 0.56 15.71 16 11 N -0.49 -21.95 3.99 -677.39 -2.71 -24.65 16 12 C 0.22 11.64 4.48 85.56 0.38 12.03 16 13 C -0.54 -29.84 7.82 25.60 0.20 -29.64 16 14 H 0.07 3.88 5.89 -2.91 -0.02 3.86 16 15 C 0.01 0.82 5.46 84.65 0.46 1.29 16 16 N -0.93 -55.88 13.29 21.45 0.28 -55.59 16 17 Si 0.95 44.31 29.54 68.60 2.03 46.34 16 18 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 19 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 20 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 21 C 0.10 4.02 1.76 45.64 0.08 4.10 16 22 C -0.11 -4.37 5.21 31.67 0.17 -4.20 16 23 C -0.11 -3.20 6.91 31.89 0.22 -2.98 16 24 C -0.11 -2.98 6.83 31.67 0.22 -2.77 16 25 C -0.10 -3.17 5.67 31.32 0.18 -2.99 16 26 N -0.52 -18.79 7.54 -180.50 -1.36 -20.15 16 27 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.03 0.74 8.14 -2.39 -0.02 0.73 16 30 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.08 0.73 6.47 -2.38 -0.02 0.71 16 34 H 0.18 2.31 6.27 -2.91 -0.02 2.29 16 35 H 0.17 3.09 8.06 -2.91 -0.02 3.07 16 36 H 0.00 -0.23 6.80 -2.39 -0.02 -0.24 16 37 H 0.02 1.23 6.69 -2.38 -0.02 1.22 16 38 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 39 H 0.05 2.28 6.10 -2.39 -0.01 2.26 16 40 H 0.05 2.05 7.39 -2.39 -0.02 2.03 16 41 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 42 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 47 H 0.05 1.64 7.33 -2.39 -0.02 1.62 16 Total: -1.00 -70.19 374.61 5.02 -65.17 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 0.96 Total: 13.73 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: 5.46 Total: -4.44 kcal Atomic # 7 Polarization: -117.37 SS G_CDS: -3.43 Total: -120.80 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -70.19 5.02 -65.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166535310.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.889 kcal (2) G-P(sol) polarization free energy of solvation -70.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds