Wall clock time and date at job start Tue Mar 31 2020 10:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.54303 * 2 1 4 4 C 1.53103 * 109.50729 * 120.10939 * 2 1 3 5 5 N 1.47013 * 109.25782 * 176.78425 * 4 2 1 6 6 C 1.46902 * 110.99567 * 177.60688 * 5 4 2 7 7 C 1.53006 * 109.46626 * 169.99994 * 6 5 4 8 8 N 1.46500 * 109.46998 * 179.97438 * 7 6 5 9 9 C 1.34769 * 120.00241 * 180.02562 * 8 7 6 10 10 O 1.21587 * 120.00166 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00187 * 180.02562 * 9 8 7 12 12 C 1.46507 * 119.99847 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.46659 * 179.97438 * 12 11 9 14 14 C 1.53003 * 109.47037 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47370 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99780 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99717 * 180.02562 * 15 14 13 18 18 N 1.31507 * 120.00498 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99825 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47611 * 59.99117 * 19 17 15 21 21 H 1.48498 * 109.47605 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.46842 * 299.99509 * 19 17 15 23 23 C 1.47007 * 110.75188 * 301.38079 * 5 4 2 24 24 C 1.53101 * 109.25984 * 58.61893 * 23 5 4 25 25 O 1.43011 * 109.50663 * 239.88994 * 2 1 3 26 26 H 1.08999 * 109.47338 * 299.89234 * 1 2 3 27 27 H 1.08999 * 109.47024 * 59.89329 * 1 2 3 28 28 H 1.09001 * 109.47014 * 179.89229 * 1 2 3 29 29 H 1.08995 * 109.47281 * 180.10572 * 3 2 1 30 30 H 1.08994 * 109.46980 * 300.10750 * 3 2 1 31 31 H 1.09000 * 109.47230 * 60.10552 * 3 2 1 32 32 H 1.09002 * 109.50429 * 56.84662 * 4 2 1 33 33 H 1.09003 * 109.53965 * 296.74144 * 4 2 1 34 34 H 1.08993 * 109.47737 * 50.00126 * 6 5 4 35 35 H 1.09000 * 109.47263 * 289.99688 * 6 5 4 36 36 H 1.09000 * 109.47050 * 299.99824 * 7 6 5 37 37 H 1.09001 * 109.46801 * 59.99937 * 7 6 5 38 38 H 0.97010 * 119.99910 * 359.97438 * 8 7 6 39 39 H 0.96996 * 120.00041 * 359.97438 * 11 9 8 40 40 H 1.08992 * 109.47399 * 299.99606 * 12 11 9 41 41 H 1.08996 * 109.46901 * 60.00043 * 12 11 9 42 42 H 1.08996 * 109.47916 * 300.00334 * 13 12 11 43 43 H 1.09000 * 109.47354 * 60.00623 * 13 12 11 44 44 H 1.08996 * 109.47240 * 300.00992 * 14 13 12 45 45 H 1.09005 * 109.46813 * 60.00166 * 14 13 12 46 46 H 0.97003 * 120.00258 * 180.02562 * 18 17 15 47 47 H 1.09001 * 109.50810 * 178.55360 * 23 5 4 48 48 H 1.09003 * 109.51180 * 298.68233 * 23 5 4 49 49 H 1.08998 * 109.50743 * 183.21404 * 24 23 5 50 50 H 1.08998 * 109.54038 * 63.10133 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0418 1.4418 0.0000 4 6 2.0412 -0.7240 1.2484 5 7 3.5093 -0.7885 1.2045 6 6 4.0446 -1.4269 2.4144 7 6 5.5381 -1.7019 2.2276 8 7 6.0721 -2.3381 3.4344 9 6 7.3758 -2.6736 3.4987 10 8 8.1087 -2.4487 2.5550 11 7 7.8669 -3.2593 4.6088 12 6 9.2841 -3.6245 4.6784 13 6 9.5789 -4.2673 6.0352 14 6 11.0587 -4.6493 6.1078 15 6 11.3490 -5.2830 7.4439 16 1 10.5573 -5.4011 8.1689 17 6 12.6255 -5.7110 7.7409 18 7 13.5896 -5.5668 6.8583 19 14 12.9852 -6.4972 9.3968 20 1 12.1516 -7.7155 9.5581 21 1 14.4215 -6.8679 9.4673 22 1 12.6685 -5.5336 10.4815 23 6 3.9639 -1.4884 -0.0057 24 6 3.4335 -0.7569 -1.2416 25 8 2.0075 -0.6763 -1.1661 26 1 -0.3634 0.5121 0.8909 27 1 -0.3633 0.5155 -0.8890 28 1 -0.3633 -1.0277 -0.0019 29 1 3.1317 1.4405 -0.0019 30 1 1.6775 1.9566 -0.8890 31 1 1.6807 1.9556 0.8909 32 1 1.6331 -1.7343 1.2760 33 1 1.7273 -0.1802 2.1394 34 1 3.5215 -2.3666 2.5912 35 1 3.9011 -0.7649 3.2684 36 1 5.6816 -2.3639 1.3736 37 1 6.0612 -0.7621 2.0508 38 1 5.4875 -2.5172 4.1875 39 1 7.2822 -3.4390 5.3615 40 1 9.5165 -4.3320 3.8826 41 1 9.8959 -2.7303 4.5598 42 1 9.3465 -3.5595 6.8309 43 1 8.9670 -5.1615 6.1543 44 1 11.2906 -5.3572 5.3121 45 1 11.6709 -3.7553 5.9885 46 1 14.4876 -5.8683 7.0672 47 1 5.0536 -1.5021 -0.0306 48 1 3.5866 -2.5110 0.0018 49 1 3.7201 -1.3042 -2.1395 50 1 3.8533 0.2483 -1.2784 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171437737.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:58 Heat of formation + Delta-G solvation = -84.309601 kcal Electronic energy + Delta-G solvation = -25703.682526 eV Core-core repulsion = 21958.546750 eV Total energy + Delta-G solvation = -3745.135776 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.61283 -39.77918 -37.07393 -35.46307 -34.40989 -34.02688 -33.27732 -31.26554 -29.96377 -28.87522 -27.74415 -26.61431 -25.05140 -24.05022 -22.95009 -21.43420 -20.86913 -20.38832 -19.75652 -18.09409 -17.03098 -16.73568 -16.45256 -16.13887 -15.96008 -15.38382 -15.31568 -15.18749 -14.57015 -14.50825 -14.36012 -14.02785 -13.81048 -13.69827 -13.34859 -12.84837 -12.64460 -12.48789 -12.33408 -12.26805 -12.08093 -11.91565 -11.80895 -11.67388 -11.53907 -11.37073 -10.88374 -10.72522 -10.70597 -10.62104 -10.14766 -9.98503 -9.85511 -9.44308 -9.23633 -9.13588 -8.85872 -8.61404 -8.36721 -6.01372 -4.04660 2.64502 3.28635 3.31950 3.35454 3.36826 3.38517 3.43532 4.20223 4.34892 4.39585 4.45152 4.47410 4.53958 4.63638 4.68938 4.81671 4.91551 5.05280 5.09055 5.17263 5.18276 5.21085 5.34218 5.35190 5.43282 5.49652 5.55231 5.56798 5.61960 5.70308 5.73344 5.81637 5.91817 6.18201 6.30950 6.42938 6.49047 6.52359 6.62450 6.79202 6.81776 7.02158 7.04892 7.63847 7.76969 7.97285 8.12586 8.38171 8.73229 9.01757 9.59391 11.09804 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.047683 B = 0.001599 C = 0.001571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.067827 B =17505.833056 C =17821.271271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.114 3.886 3 C -0.169 4.169 4 C 0.032 3.968 5 N -0.528 5.528 6 C 0.045 3.955 7 C 0.137 3.863 8 N -0.752 5.752 9 C 0.701 3.299 10 O -0.592 6.592 11 N -0.741 5.741 12 C 0.135 3.865 13 C -0.120 4.120 14 C 0.024 3.976 15 C -0.524 4.524 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.893 5.893 19 Si 0.894 3.106 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.007 3.993 24 C 0.061 3.939 25 O -0.377 6.377 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.044 0.956 33 H 0.086 0.914 34 H 0.042 0.958 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.394 0.606 39 H 0.394 0.606 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.054 0.946 43 H 0.053 0.947 44 H 0.019 0.981 45 H 0.019 0.981 46 H 0.262 0.738 47 H 0.097 0.903 48 H 0.045 0.955 49 H 0.099 0.901 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.502 12.164 -13.085 33.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.074 3.926 3 C -0.226 4.226 4 C -0.096 4.096 5 N -0.253 5.253 6 C -0.083 4.083 7 C 0.012 3.988 8 N -0.409 5.409 9 C 0.401 3.599 10 O -0.470 6.470 11 N -0.395 5.395 12 C 0.012 3.988 13 C -0.158 4.158 14 C -0.014 4.014 15 C -0.562 4.562 16 H 0.073 0.927 17 C -0.144 4.144 18 N -0.532 5.532 19 Si 0.721 3.279 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.121 4.121 24 C -0.015 4.015 25 O -0.297 6.297 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.062 0.938 33 H 0.104 0.896 34 H 0.060 0.940 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.227 0.773 39 H 0.227 0.773 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.038 0.962 45 H 0.038 0.962 46 H 0.071 0.929 47 H 0.115 0.885 48 H 0.063 0.937 49 H 0.117 0.883 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -27.529 12.741 -14.165 33.479 hybrid contribution -0.345 -1.414 1.939 2.424 sum -27.874 11.328 -12.226 32.477 Atomic orbital electron populations 1.21751 0.92167 1.02872 1.02826 1.21549 0.94532 0.91974 0.84550 1.22283 1.03037 0.95186 1.02129 1.22798 0.87403 1.00114 0.99331 1.62212 1.08960 1.52343 1.01823 1.22294 0.94417 0.98156 0.93471 1.21207 0.92132 0.98386 0.87057 1.44997 1.09076 1.67401 1.19458 1.15965 0.81645 0.78712 0.83617 1.90924 1.57878 1.60763 1.37441 1.45384 1.12492 1.64971 1.16703 1.21518 0.78029 0.99674 0.99613 1.21891 1.01674 0.99022 0.93245 1.19028 0.88210 0.96875 0.97276 1.21167 0.94591 1.39728 1.00721 0.92714 1.25024 0.96387 0.96011 0.97004 1.69953 1.01478 1.47163 1.34615 0.86640 0.77192 0.79751 0.84278 1.20281 1.21262 1.20265 1.22987 1.02075 0.96457 0.90599 1.22687 0.81064 1.00595 0.97200 1.88033 1.21095 1.77749 1.42791 0.90917 0.91421 0.91903 0.90835 0.92320 0.91712 0.93815 0.89559 0.93971 0.89673 0.91494 0.90726 0.77275 0.77323 0.91951 0.91922 0.92759 0.92790 0.96233 0.96219 0.92870 0.88516 0.93677 0.88314 0.91802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.74 8.85 37.16 0.33 -0.41 16 2 C 0.11 0.78 1.11 -90.57 -0.10 0.68 16 3 C -0.17 -1.07 8.17 37.16 0.30 -0.77 16 4 C 0.03 0.21 4.32 -3.71 -0.02 0.19 16 5 N -0.53 -3.90 4.24 -234.30 -0.99 -4.89 16 6 C 0.04 0.31 5.39 -3.82 -0.02 0.29 16 7 C 0.14 1.31 4.94 -4.04 -0.02 1.29 16 8 N -0.75 -7.91 5.56 -65.22 -0.36 -8.27 16 9 C 0.70 10.69 8.57 -86.93 -0.74 9.95 16 10 O -0.59 -11.69 16.34 5.29 0.09 -11.60 16 11 N -0.74 -10.71 5.56 -65.23 -0.36 -11.08 16 12 C 0.13 2.41 5.67 -4.04 -0.02 2.39 16 13 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 14 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 15 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 16 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -26.81 13.29 55.43 0.74 -26.07 16 19 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 C 0.01 0.05 4.94 -3.71 -0.02 0.03 16 24 C 0.06 0.45 6.61 37.21 0.25 0.69 16 25 O -0.38 -3.30 10.28 -35.23 -0.36 -3.66 16 26 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.54 6.12 -51.93 -0.32 0.22 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.04 0.28 8.08 -51.93 -0.42 -0.14 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.71 6.28 -51.93 -0.33 0.38 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.39 2.92 8.49 -40.82 -0.35 2.57 16 39 H 0.39 4.45 8.49 -40.82 -0.35 4.11 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 47 H 0.10 0.75 6.05 -51.93 -0.31 0.43 16 48 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 50 H 0.06 0.45 6.49 -51.93 -0.34 0.12 16 LS Contribution 393.98 15.07 5.94 5.94 Total: -1.00 -33.82 393.98 -10.23 -44.05 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -9.14 Total: 0.24 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -0.76 Total: -1.10 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: -0.98 Total: -50.32 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -0.28 Total: -15.26 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.82 -10.23 -44.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171437737.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.256 kcal (2) G-P(sol) polarization free energy of solvation -33.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds