Wall clock time and date at job start Tue Mar 31 2020 11:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46899 * 111.00474 * 2 1 4 4 C 1.46907 * 110.99933 * 236.04985 * 2 1 3 5 5 C 1.53000 * 109.54286 * 302.44210 * 4 2 1 6 6 N 1.46503 * 109.46678 * 305.53602 * 5 4 2 7 7 C 1.34786 * 119.99487 * 178.76131 * 6 5 4 8 8 O 1.21579 * 120.00045 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99633 * 179.97438 * 7 6 5 10 10 C 1.46492 * 119.99781 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47238 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.47357 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.46963 * 179.97438 * 12 11 10 14 14 H 1.07997 * 120.00559 * 0.02562 * 13 12 11 15 15 C 1.37887 * 119.99889 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99685 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00101 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47043 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.46858 * 120.00089 * 17 15 13 20 20 H 1.48495 * 109.46780 * 239.99951 * 17 15 13 21 21 C 1.53177 * 109.54183 * 182.17537 * 4 2 1 22 22 C 1.53103 * 109.16198 * 183.15196 * 21 4 2 23 23 O 1.42900 * 109.41070 * 57.60905 * 22 21 4 24 24 C 1.42904 * 114.09818 * 298.83918 * 23 22 21 25 25 C 1.53096 * 109.41571 * 61.16393 * 24 23 22 26 26 H 1.09000 * 109.47602 * 186.20468 * 1 2 3 27 27 H 1.09003 * 109.47233 * 66.20189 * 1 2 3 28 28 H 1.08996 * 109.47225 * 306.20786 * 1 2 3 29 29 H 1.09002 * 109.46625 * 56.05114 * 3 2 1 30 30 H 1.09003 * 109.47782 * 176.04429 * 3 2 1 31 31 H 1.08994 * 109.47466 * 296.05223 * 3 2 1 32 32 H 1.08994 * 109.47361 * 65.53464 * 5 4 2 33 33 H 1.08996 * 109.47250 * 185.54277 * 5 4 2 34 34 H 0.97004 * 120.00479 * 358.76593 * 6 5 4 35 35 H 0.96997 * 119.99944 * 0.02562 * 9 7 6 36 36 H 1.09004 * 109.47274 * 300.00293 * 10 9 7 37 37 H 1.09001 * 109.47683 * 60.00074 * 10 9 7 38 38 H 1.09005 * 109.46841 * 299.99469 * 11 10 9 39 39 H 1.08997 * 109.47303 * 59.99934 * 11 10 9 40 40 H 1.09004 * 109.46948 * 299.99542 * 12 11 10 41 41 H 1.08997 * 109.47234 * 59.99566 * 12 11 10 42 42 H 0.97001 * 119.99657 * 179.97438 * 16 15 13 43 43 H 1.09004 * 109.52399 * 303.05385 * 21 4 2 44 44 H 1.08994 * 109.52695 * 63.24843 * 21 4 2 45 45 H 1.08997 * 109.47397 * 297.62822 * 22 21 4 46 46 H 1.08995 * 109.47804 * 177.58797 * 22 21 4 47 47 H 1.09004 * 109.48050 * 301.17880 * 24 23 22 48 48 H 1.08998 * 109.49315 * 181.15364 * 24 23 22 49 49 H 1.08995 * 109.52004 * 182.48621 * 25 24 23 50 50 H 1.08998 * 109.51603 * 62.29457 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7659 -1.1377 5 6 1.4567 -2.1970 -1.0844 6 7 1.7648 -2.7863 0.2210 7 6 1.3620 -4.0406 0.5060 8 8 0.7434 -4.6830 -0.3204 9 7 1.6458 -4.5831 1.7067 10 6 1.2085 -5.9465 2.0163 11 6 1.6551 -6.3162 3.4322 12 6 1.1989 -7.7405 3.7553 13 6 1.6393 -8.1048 5.1497 14 1 2.1892 -7.3918 5.7460 15 6 1.3394 -9.3482 5.6646 16 7 0.6694 -10.2163 4.9387 17 14 1.8847 -9.7996 7.3933 18 1 2.6163 -8.6564 7.9959 19 1 0.6933 -10.1160 8.2213 20 1 2.7773 -10.9850 7.3370 21 6 3.5257 -0.7898 -1.0751 22 6 4.0676 -1.5221 -2.3056 23 8 3.5996 -0.8724 -3.4892 24 6 2.1771 -0.8614 -3.6251 25 6 1.5592 -0.1027 -2.4477 26 1 -0.3634 -1.0216 0.1111 27 1 -0.3634 0.4147 -0.9403 28 1 -0.3633 0.6070 0.8292 29 1 1.5899 1.9162 0.8525 30 1 3.0829 1.3432 0.0709 31 1 1.7044 1.8724 -0.9232 32 1 0.3768 -2.1844 -1.2316 33 1 1.9237 -2.7905 -1.8703 34 1 2.2586 -2.2739 0.8802 35 1 2.1396 -4.0707 2.3658 36 1 0.1218 -6.0030 1.9520 37 1 1.6512 -6.6411 1.3023 38 1 2.7417 -6.2598 3.4968 39 1 1.2120 -5.6217 4.1459 40 1 0.1123 -7.7974 3.6906 41 1 1.6423 -8.4348 3.0415 42 1 0.4587 -11.0912 5.3008 43 1 3.9058 0.2317 -1.0624 44 1 3.8453 -1.3096 -0.1719 45 1 3.7199 -2.5550 -2.2962 46 1 5.1573 -1.5048 -2.2882 47 1 1.8047 -1.8859 -3.6330 48 1 1.9047 -0.3685 -4.5583 49 1 0.4724 -0.1311 -2.5261 50 1 1.8996 0.9327 -2.4628 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172226714.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:10 Heat of formation + Delta-G solvation = -102.076524 kcal Electronic energy + Delta-G solvation = -27062.967719 eV Core-core repulsion = 23317.061512 eV Total energy + Delta-G solvation = -3745.906207 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.85471 -40.61494 -38.20799 -37.00297 -35.43436 -35.15468 -33.26192 -32.61271 -32.22926 -29.37896 -28.41102 -27.27878 -25.71386 -24.79263 -24.48230 -23.31607 -22.27590 -21.77454 -19.85636 -19.00921 -18.48865 -17.86520 -17.26317 -17.12172 -16.86993 -16.50285 -16.27234 -16.14012 -15.83335 -15.50997 -15.37145 -15.19250 -14.95834 -14.43866 -14.35939 -14.24001 -13.84190 -13.70513 -13.38267 -13.28223 -12.98628 -12.88313 -12.76602 -12.60076 -12.52861 -12.32195 -12.19193 -11.96955 -11.80698 -11.65270 -11.63944 -11.29012 -11.21107 -11.11411 -10.60555 -10.54917 -10.32766 -9.69937 -9.27054 -8.18405 -6.29660 1.42623 1.42783 1.56059 1.73206 2.18198 2.43014 2.80811 2.93822 3.15472 3.37449 3.46981 3.62390 3.82720 3.95749 4.17506 4.19339 4.19671 4.24076 4.26340 4.39253 4.44735 4.55205 4.58687 4.62365 4.66360 4.67617 4.70287 4.76511 4.85928 4.98216 5.00501 5.01156 5.01665 5.08563 5.11196 5.19029 5.21784 5.48209 5.51484 5.57618 5.73114 5.86009 6.00492 6.04066 6.07485 6.20040 6.24376 6.88004 7.16305 7.39852 7.62286 8.94048 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.024695 B = 0.002193 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.552320 B =12763.644269 C =13056.664555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.535 5.535 3 C 0.017 3.983 4 C 0.107 3.893 5 C 0.151 3.849 6 N -0.716 5.716 7 C 0.697 3.303 8 O -0.644 6.644 9 N -0.730 5.730 10 C 0.151 3.849 11 C -0.099 4.099 12 C 0.023 3.977 13 C -0.538 4.538 14 H 0.067 0.933 15 C -0.005 4.005 16 N -0.936 5.936 17 Si 0.968 3.032 18 H -0.258 1.258 19 H -0.280 1.280 20 H -0.280 1.280 21 C -0.138 4.138 22 C 0.055 3.945 23 O -0.396 6.396 24 C 0.057 3.943 25 C -0.175 4.175 26 H 0.054 0.946 27 H 0.037 0.963 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.034 0.966 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.414 0.586 35 H 0.411 0.589 36 H 0.044 0.956 37 H 0.045 0.955 38 H 0.068 0.932 39 H 0.067 0.933 40 H -0.008 1.008 41 H -0.008 1.008 42 H 0.263 0.737 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.044 0.956 46 H 0.109 0.891 47 H 0.048 0.952 48 H 0.108 0.892 49 H 0.082 0.918 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.450 28.661 -13.751 32.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.258 5.258 3 C -0.130 4.130 4 C 0.016 3.984 5 C 0.026 3.974 6 N -0.373 5.373 7 C 0.397 3.603 8 O -0.526 6.526 9 N -0.385 5.385 10 C 0.026 3.974 11 C -0.137 4.137 12 C -0.014 4.014 13 C -0.577 4.577 14 H 0.085 0.915 15 C -0.202 4.202 16 N -0.576 5.576 17 Si 0.792 3.208 18 H -0.182 1.182 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.176 4.176 22 C -0.022 4.022 23 O -0.315 6.315 24 C -0.020 4.020 25 C -0.214 4.214 26 H 0.073 0.927 27 H 0.056 0.944 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.251 0.749 35 H 0.247 0.753 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.010 0.990 41 H 0.010 0.990 42 H 0.072 0.928 43 H 0.107 0.893 44 H 0.105 0.895 45 H 0.062 0.938 46 H 0.127 0.873 47 H 0.066 0.934 48 H 0.126 0.874 49 H 0.101 0.899 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.100 27.791 -14.169 31.609 hybrid contribution -0.309 -0.227 0.691 0.790 sum 4.791 27.564 -13.478 31.055 Atomic orbital electron populations 1.22445 0.87200 1.02003 1.01275 1.62181 1.08187 1.14805 1.40659 1.22549 1.01488 0.87780 1.01214 1.21258 0.95662 0.91628 0.89803 1.21296 0.99704 0.92170 0.84239 1.44722 1.61217 1.12918 1.18458 1.16171 0.79658 0.82156 0.82358 1.90884 1.48400 1.63582 1.49775 1.44998 1.61298 1.16707 1.15535 1.21048 0.98358 0.81322 0.96662 1.21580 1.01050 0.97660 0.93453 1.18948 0.94982 0.92042 0.95474 1.21711 1.35481 0.99762 1.00698 0.91504 1.26038 0.95214 0.96603 1.02365 1.70123 1.41154 1.07259 1.39092 0.85357 0.78033 0.78427 0.78967 1.18151 1.20617 1.20589 1.22266 0.92901 1.03067 0.99322 1.22749 1.00519 0.94996 0.83961 1.87922 1.21897 1.78959 1.42701 1.22681 0.80624 0.99764 0.98969 1.22765 1.02115 1.01482 0.95075 0.92675 0.94441 0.90502 0.90660 0.90303 0.94714 0.92773 0.92241 0.74884 0.75274 0.93707 0.93610 0.91341 0.91409 0.98997 0.98953 0.92836 0.89313 0.89525 0.93761 0.87262 0.93397 0.87353 0.89901 0.89329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 8.82 127.69 1.13 1.37 16 2 N -0.54 -6.48 4.28 -898.02 -3.84 -10.33 16 3 C 0.02 0.15 8.82 127.69 1.13 1.28 16 4 C 0.11 1.39 0.11 3.64 0.00 1.39 16 5 C 0.15 2.91 3.37 86.38 0.29 3.20 16 6 N -0.72 -15.09 5.11 -478.53 -2.44 -17.53 16 7 C 0.70 21.25 8.57 179.05 1.53 22.78 16 8 O -0.64 -25.99 16.34 -3.97 -0.06 -26.05 16 9 N -0.73 -20.87 5.56 -478.55 -2.66 -23.53 16 10 C 0.15 5.50 5.67 86.38 0.49 5.99 16 11 C -0.10 -3.87 5.27 30.60 0.16 -3.71 16 12 C 0.02 1.22 4.97 29.85 0.15 1.37 16 13 C -0.54 -30.17 9.11 25.60 0.23 -29.94 16 14 H 0.07 3.52 7.74 -2.91 -0.02 3.49 16 15 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 16 N -0.94 -57.53 13.29 21.45 0.28 -57.25 16 17 Si 0.97 43.94 29.54 68.60 2.03 45.97 16 18 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 19 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 20 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 21 C -0.14 -1.61 4.63 30.69 0.14 -1.47 16 22 C 0.05 0.77 6.57 72.02 0.47 1.25 16 23 O -0.40 -6.66 10.77 -148.98 -1.60 -8.26 16 24 C 0.06 0.77 6.57 72.01 0.47 1.24 16 25 C -0.17 -2.02 4.22 30.68 0.13 -1.89 16 26 H 0.05 0.95 6.52 -2.39 -0.02 0.94 16 27 H 0.04 0.43 6.33 -2.39 -0.02 0.41 16 28 H 0.08 0.89 8.08 -2.39 -0.02 0.87 16 29 H 0.07 0.61 8.09 -2.39 -0.02 0.59 16 30 H 0.08 0.62 6.21 -2.39 -0.01 0.60 16 31 H 0.03 0.29 6.28 -2.39 -0.01 0.27 16 32 H 0.05 1.20 6.75 -2.39 -0.02 1.18 16 33 H 0.06 1.30 5.04 -2.39 -0.01 1.29 16 34 H 0.41 6.79 7.36 -92.71 -0.68 6.11 16 35 H 0.41 8.92 8.49 -92.71 -0.79 8.14 16 36 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 37 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 39 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 40 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 41 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 42 H 0.26 15.15 8.31 -92.71 -0.77 14.37 16 43 H 0.09 0.90 6.22 -2.39 -0.01 0.88 16 44 H 0.09 0.98 7.16 -2.39 -0.02 0.96 16 45 H 0.04 0.74 6.49 -2.39 -0.02 0.73 16 46 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.05 0.73 6.73 -2.39 -0.02 0.71 16 48 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 49 H 0.08 0.92 6.59 -2.39 -0.02 0.90 16 50 H 0.09 0.93 6.29 -2.39 -0.02 0.91 16 Total: -1.00 -72.46 378.18 -2.03 -74.49 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -0.52 Total: 19.42 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: 6.79 Total: 3.06 kcal Atomic # 7 Polarization: -99.97 SS G_CDS: -8.66 Total: -108.63 kcal Atomic # 8 Polarization: -32.64 SS G_CDS: -1.67 Total: -34.31 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -72.46 -2.03 -74.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172226714.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.582 kcal (2) G-P(sol) polarization free energy of solvation -72.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds