Wall clock time and date at job start Tue Mar 31 2020 11:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47390 * 2 1 4 4 C 1.53008 * 109.46739 * 65.00220 * 3 2 1 5 5 C 1.53004 * 109.47048 * 185.28430 * 4 3 2 6 6 C 1.53001 * 109.47622 * 185.00155 * 3 2 1 7 7 N 1.46904 * 109.46680 * 63.14309 * 6 3 2 8 8 C 1.46899 * 111.00140 * 71.98766 * 7 6 3 9 9 C 1.50702 * 109.46751 * 67.95284 * 8 7 6 10 10 H 1.08001 * 120.00181 * 4.47584 * 9 8 7 11 11 C 1.37878 * 119.99660 * 184.47605 * 9 8 7 12 12 N 1.31521 * 119.99901 * 184.99193 * 11 9 8 13 13 Si 1.86802 * 120.00248 * 4.99411 * 11 9 8 14 14 H 1.48494 * 109.47206 * 94.90434 * 13 11 9 15 15 H 1.48498 * 109.47077 * 214.90623 * 13 11 9 16 16 H 1.48500 * 109.46753 * 334.90441 * 13 11 9 17 17 C 1.46895 * 110.99755 * 195.94267 * 7 6 3 18 18 C 1.53000 * 109.47216 * 162.90167 * 17 7 6 19 19 O 1.42897 * 109.47018 * 66.97408 * 18 17 7 20 20 C 1.42896 * 114.00197 * 184.89492 * 19 18 17 21 21 H 1.09008 * 109.48214 * 305.35115 * 20 19 18 22 22 C 1.53093 * 109.48653 * 185.32933 * 20 19 18 23 23 C 1.53172 * 109.16616 * 182.39920 * 22 20 19 24 24 C 1.53175 * 109.03865 * 56.97764 * 23 22 20 25 25 C 1.53087 * 109.16590 * 303.01895 * 24 23 22 26 26 O 1.42903 * 109.48149 * 65.36997 * 20 19 18 27 27 H 1.09002 * 109.46747 * 299.99714 * 1 2 3 28 28 H 1.08996 * 109.47398 * 59.99697 * 1 2 3 29 29 H 1.08994 * 109.46942 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47029 * 240.00753 * 2 1 3 31 31 H 1.08996 * 109.47398 * 120.00303 * 2 1 3 32 32 H 1.09004 * 109.47507 * 305.00834 * 3 2 1 33 33 H 1.08997 * 109.46958 * 305.28545 * 4 3 2 34 34 H 1.08999 * 109.46898 * 65.28472 * 4 3 2 35 35 H 1.09003 * 109.47197 * 64.69297 * 5 4 3 36 36 H 1.08995 * 109.46909 * 184.69218 * 5 4 3 37 37 H 1.08996 * 109.46855 * 304.69582 * 5 4 3 38 38 H 1.09002 * 109.46927 * 303.14658 * 6 3 2 39 39 H 1.08995 * 109.46916 * 183.14364 * 6 3 2 40 40 H 1.08994 * 109.47130 * 187.95022 * 8 7 6 41 41 H 1.08999 * 109.47137 * 307.95309 * 8 7 6 42 42 H 0.96998 * 120.00092 * 174.99817 * 12 11 9 43 43 H 1.09001 * 109.47654 * 42.90213 * 17 7 6 44 44 H 1.09004 * 109.47458 * 282.90320 * 17 7 6 45 45 H 1.08999 * 109.47282 * 306.97121 * 18 17 7 46 46 H 1.09002 * 109.47251 * 186.97291 * 18 17 7 47 47 H 1.08999 * 109.51957 * 302.30606 * 22 20 19 48 48 H 1.09003 * 109.52328 * 62.48753 * 22 20 19 49 49 H 1.09002 * 109.54162 * 176.84995 * 23 22 20 50 50 H 1.09006 * 109.53998 * 297.11107 * 23 22 20 51 51 H 1.08995 * 109.51999 * 62.92699 * 24 23 22 52 52 H 1.09007 * 109.52047 * 183.05108 * 24 23 22 53 53 H 1.08997 * 109.48384 * 177.59054 * 25 24 23 54 54 H 1.09004 * 109.48093 * 297.62049 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6353 2.1265 1.3075 5 6 2.0291 3.6040 1.2533 6 6 3.5649 1.4444 -0.1258 7 7 3.9505 0.8554 -1.4151 8 6 3.6327 1.7639 -2.5249 9 6 4.5228 2.9777 -2.4510 10 1 5.2998 3.0329 -1.7029 11 6 4.3450 4.0179 -3.3384 12 7 5.1821 5.0324 -3.3386 13 14 2.9154 3.9864 -4.5404 14 1 1.7723 4.7432 -3.9699 15 1 3.3322 4.6105 -5.8217 16 1 2.5054 2.5802 -4.7849 17 6 5.3738 0.4921 -1.4232 18 6 5.6453 -0.4809 -2.5724 19 8 5.4610 0.1918 -3.8196 20 6 5.5828 -0.6581 -4.9619 21 1 6.5418 -1.1753 -4.9296 22 6 5.5003 0.1852 -6.2370 23 6 5.5713 -0.7389 -7.4565 24 6 4.4427 -1.7708 -7.3679 25 6 4.5661 -2.5386 -6.0493 26 8 4.5237 -1.6175 -4.9572 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6054 1.9816 -0.8417 33 1 0.5570 2.0425 1.4427 34 1 2.1448 1.6450 2.1422 35 1 1.4571 4.1040 0.4716 36 1 1.8170 4.0720 2.2145 37 1 3.0936 3.6884 1.0349 38 1 3.9970 0.8581 0.6852 39 1 3.9328 2.4688 -0.0697 40 1 3.7961 1.2508 -3.4726 41 1 2.5899 2.0731 -2.4542 42 1 5.1007 5.7282 -4.0095 43 1 5.6332 0.0179 -0.4767 44 1 5.9773 1.3899 -1.5571 45 1 4.9547 -1.3216 -2.5074 46 1 6.6700 -0.8463 -2.5046 47 1 4.5587 0.7341 -6.2502 48 1 6.3330 0.8880 -6.2634 49 1 5.4569 -0.1505 -8.3669 50 1 6.5334 -1.2511 -7.4702 51 1 3.4798 -1.2614 -7.4041 52 1 4.5186 -2.4662 -8.2039 53 1 3.7406 -3.2449 -5.9613 54 1 5.5118 -3.0805 -6.0313 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193061943.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:34 Heat of formation + Delta-G solvation = -131.211909 kcal Electronic energy + Delta-G solvation = -29004.761481 eV Core-core repulsion = 25361.132212 eV Total energy + Delta-G solvation = -3643.629269 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 313.240 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.61081 -39.56807 -37.92357 -36.37730 -34.63566 -34.37739 -32.51880 -31.75763 -30.33533 -29.80761 -27.34232 -25.63745 -24.95427 -24.18043 -23.85651 -23.27934 -21.61949 -21.08671 -20.26980 -19.00785 -18.37081 -17.69291 -16.74305 -16.70970 -16.49906 -15.99922 -15.67813 -15.36620 -15.33798 -15.16336 -14.86799 -14.60426 -14.46604 -14.31772 -14.08847 -13.74527 -13.67631 -13.37923 -13.30855 -13.09991 -12.74738 -12.67112 -12.58817 -12.39009 -12.30134 -12.26014 -12.10166 -11.94636 -11.89343 -11.75033 -11.72303 -11.49053 -11.43319 -11.18899 -11.11865 -10.97158 -10.73279 -10.44028 -10.32877 -8.77366 -8.22087 -6.18687 1.28202 1.30386 1.45192 2.37044 2.52102 3.09996 3.14409 3.38750 3.80734 3.87664 3.97159 4.02074 4.02772 4.10113 4.12316 4.25384 4.35521 4.44363 4.46961 4.50022 4.56452 4.61127 4.63603 4.69903 4.71358 4.77685 4.79759 4.85924 4.93884 5.00305 5.01509 5.02919 5.07940 5.09138 5.10455 5.13124 5.19288 5.23999 5.28056 5.34092 5.34197 5.38247 5.54686 5.58096 5.64465 5.71889 5.75514 6.22553 6.24296 6.47149 6.48805 6.64764 6.84325 7.43991 8.93929 Molecular weight = 313.24amu Principal moments of inertia in cm(-1) A = 0.011130 B = 0.005142 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.218587 B = 5443.759299 C = 6619.111149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.103 4.103 3 C -0.078 4.078 4 C -0.108 4.108 5 C -0.154 4.154 6 C 0.062 3.938 7 N -0.521 5.521 8 C 0.171 3.829 9 C -0.510 4.510 10 H 0.036 0.964 11 C 0.017 3.983 12 N -0.951 5.951 13 Si 0.928 3.072 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.256 1.256 17 C 0.054 3.946 18 C 0.078 3.922 19 O -0.370 6.370 20 C 0.251 3.749 21 H 0.064 0.936 22 C -0.145 4.145 23 C -0.112 4.112 24 C -0.156 4.156 25 C 0.063 3.937 26 O -0.427 6.427 27 H 0.064 0.936 28 H 0.037 0.963 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.039 0.961 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.035 0.965 36 H 0.068 0.932 37 H 0.037 0.963 38 H 0.072 0.928 39 H 0.017 0.983 40 H 0.044 0.956 41 H 0.005 0.995 42 H 0.260 0.740 43 H 0.095 0.905 44 H 0.025 0.975 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.047 0.953 48 H 0.071 0.929 49 H 0.081 0.919 50 H 0.084 0.916 51 H 0.056 0.944 52 H 0.105 0.895 53 H 0.107 0.893 54 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.148 -16.882 -0.828 17.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.140 4.140 3 C -0.097 4.097 4 C -0.146 4.146 5 C -0.211 4.211 6 C -0.066 4.066 7 N -0.243 5.243 8 C 0.043 3.957 9 C -0.549 4.549 10 H 0.054 0.946 11 C -0.179 4.179 12 N -0.594 5.594 13 Si 0.754 3.246 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.179 1.179 17 C -0.074 4.074 18 C 0.002 3.998 19 O -0.289 6.289 20 C 0.156 3.844 21 H 0.081 0.919 22 C -0.183 4.183 23 C -0.150 4.150 24 C -0.194 4.194 25 C -0.013 4.013 26 O -0.349 6.349 27 H 0.083 0.917 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.057 0.943 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.054 0.946 36 H 0.087 0.913 37 H 0.056 0.944 38 H 0.091 0.909 39 H 0.035 0.965 40 H 0.062 0.938 41 H 0.024 0.976 42 H 0.069 0.931 43 H 0.113 0.887 44 H 0.043 0.957 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.066 0.934 48 H 0.090 0.910 49 H 0.099 0.901 50 H 0.103 0.897 51 H 0.075 0.925 52 H 0.124 0.876 53 H 0.125 0.875 54 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.604 -16.944 -0.802 17.341 hybrid contribution 0.472 1.607 -0.813 1.862 sum -3.132 -15.336 -1.615 15.736 Atomic orbital electron populations 1.21807 0.95663 1.01690 1.01386 1.21353 0.95557 0.95142 1.01959 1.21119 0.94290 0.96978 0.97349 1.21538 1.01695 0.94524 0.96802 1.21812 1.00709 0.97364 1.01202 1.22116 0.96160 0.97176 0.91147 1.62481 1.16776 1.41824 1.03261 1.20055 0.93533 0.89831 0.92260 1.21769 1.15877 1.01548 1.15685 0.94594 1.25592 0.98308 0.94883 0.99160 1.70049 1.39838 1.12946 1.36531 0.85989 0.80575 0.79030 0.79026 1.20090 1.21059 1.17945 1.22143 0.90130 0.97818 0.97343 1.22481 0.99333 0.95111 0.82897 1.88368 1.92216 1.33885 1.14438 1.23004 0.89038 0.85549 0.86855 0.91866 1.22049 1.02506 0.99201 0.94552 1.21590 1.00002 0.96981 0.96387 1.22236 0.98902 0.99146 0.99071 1.22756 1.03249 0.90588 0.84662 1.87846 1.52024 1.45795 1.49212 0.91727 0.94383 0.91972 0.92630 0.91430 0.94281 0.90431 0.90850 0.94558 0.91312 0.94427 0.90949 0.96451 0.93774 0.97649 0.93098 0.88666 0.95683 0.92141 0.92000 0.93418 0.91032 0.90077 0.89723 0.92515 0.87639 0.87471 0.91428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.67 71.98 0.70 -2.94 16 2 C -0.10 -2.96 5.34 30.59 0.16 -2.79 16 3 C -0.08 -2.65 1.85 -10.79 -0.02 -2.67 16 4 C -0.11 -3.01 5.27 30.60 0.16 -2.85 16 5 C -0.15 -4.86 9.78 71.98 0.70 -4.16 16 6 C 0.06 2.39 4.11 86.30 0.35 2.74 16 7 N -0.52 -22.00 3.90 -900.80 -3.52 -25.51 16 8 C 0.17 8.66 3.55 85.56 0.30 8.96 16 9 C -0.51 -29.86 7.84 25.60 0.20 -29.66 16 10 H 0.04 2.32 6.24 -2.91 -0.02 2.31 16 11 C 0.02 1.03 5.47 84.65 0.46 1.50 16 12 N -0.95 -61.34 13.95 21.45 0.30 -61.04 16 13 Si 0.93 47.70 27.43 68.60 1.88 49.59 16 14 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 15 H -0.28 -14.27 7.11 99.48 0.71 -13.56 16 16 H -0.26 -12.80 6.64 99.48 0.66 -12.14 16 17 C 0.05 2.13 5.33 86.30 0.46 2.59 16 18 C 0.08 2.80 6.15 71.98 0.44 3.25 16 19 O -0.37 -15.52 7.36 -126.21 -0.93 -16.45 16 20 C 0.25 8.38 3.20 72.01 0.23 8.61 16 21 H 0.06 1.80 8.13 -2.38 -0.02 1.78 16 22 C -0.15 -4.65 5.79 30.68 0.18 -4.47 16 23 C -0.11 -2.44 6.03 30.71 0.19 -2.25 16 24 C -0.16 -3.05 6.14 30.68 0.19 -2.87 16 25 C 0.06 1.35 6.84 72.01 0.49 1.84 16 26 O -0.43 -13.75 9.98 -126.21 -1.26 -15.01 16 27 H 0.06 1.39 6.46 -2.39 -0.02 1.37 16 28 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.05 1.85 7.56 -2.39 -0.02 1.83 16 31 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.04 1.57 6.53 -2.38 -0.02 1.56 16 33 H 0.08 1.88 6.33 -2.39 -0.02 1.87 16 34 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.04 1.37 6.31 -2.39 -0.02 1.36 16 38 H 0.07 2.41 7.71 -2.39 -0.02 2.39 16 39 H 0.02 0.79 5.06 -2.39 -0.01 0.78 16 40 H 0.04 2.40 5.23 -2.39 -0.01 2.38 16 41 H 0.01 0.29 5.43 -2.39 -0.01 0.27 16 42 H 0.26 15.86 8.32 -92.71 -0.77 15.09 16 43 H 0.10 3.08 7.70 -2.39 -0.02 3.07 16 44 H 0.02 1.19 5.79 -2.39 -0.01 1.18 16 45 H 0.06 2.11 7.64 -2.39 -0.02 2.10 16 46 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 47 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 48 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 49 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 50 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 51 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 52 H 0.11 1.38 8.14 -2.38 -0.02 1.36 16 53 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 54 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 Total: -1.00 -72.03 398.37 2.47 -69.56 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: 0.79 Total: 24.04 kcal Atomic # 6 Polarization: -30.38 SS G_CDS: 5.20 Total: -25.18 kcal Atomic # 7 Polarization: -83.34 SS G_CDS: -3.22 Total: -86.55 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: -2.19 Total: -31.46 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 1.88 Total: 49.59 kcal Total: -72.03 2.47 -69.56 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193061943.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.652 kcal (2) G-P(sol) polarization free energy of solvation -72.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds