Wall clock time and date at job start Tue Mar 31 2020 11:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47291 * 2 1 4 4 C 1.53006 * 109.47168 * 120.00004 * 2 1 3 5 5 C 1.52992 * 109.47320 * 174.99911 * 4 2 1 6 6 O 1.42898 * 109.47331 * 180.02562 * 5 4 2 7 7 C 1.42896 * 114.00592 * 180.02562 * 6 5 4 8 8 H 1.09004 * 109.46937 * 29.99481 * 7 6 5 9 9 C 1.53009 * 109.47023 * 270.00002 * 7 6 5 10 10 C 1.52998 * 109.46997 * 299.99581 * 9 7 6 11 11 C 1.52999 * 109.47100 * 300.00270 * 10 9 7 12 12 C 1.53001 * 109.47423 * 59.99732 * 11 10 9 13 13 C 1.52997 * 109.47648 * 149.99715 * 7 6 5 14 14 H 1.09002 * 109.47162 * 179.97438 * 13 7 6 15 15 N 1.46902 * 109.47360 * 300.00206 * 13 7 6 16 16 C 1.46894 * 110.99820 * 204.99865 * 15 13 7 17 17 C 1.53009 * 109.46764 * 180.02562 * 16 15 13 18 18 O 1.42899 * 109.47113 * 64.99856 * 17 16 15 19 19 C 1.42903 * 113.99629 * 180.02562 * 18 17 16 20 20 C 1.50701 * 109.46878 * 179.97438 * 19 18 17 21 21 H 1.07998 * 120.00129 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99861 * 179.97438 * 20 19 18 23 23 N 1.31510 * 119.99913 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99734 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47432 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.46890 * 120.00210 * 24 22 20 27 27 H 1.48501 * 109.47062 * 240.00257 * 24 22 20 28 28 H 1.08999 * 109.47388 * 300.00291 * 1 2 3 29 29 H 1.08997 * 109.46781 * 59.99911 * 1 2 3 30 30 H 1.08995 * 109.47242 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47388 * 239.99709 * 2 1 3 32 32 H 1.09001 * 109.46733 * 59.99890 * 3 2 1 33 33 H 1.09004 * 109.47061 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47281 * 299.99783 * 3 2 1 35 35 H 1.09000 * 109.47055 * 55.00066 * 4 2 1 36 36 H 1.09002 * 109.47142 * 295.00368 * 4 2 1 37 37 H 1.08999 * 109.47391 * 59.99812 * 5 4 2 38 38 H 1.09000 * 109.47461 * 299.99763 * 5 4 2 39 39 H 1.08998 * 109.46719 * 179.97438 * 9 7 6 40 40 H 1.09005 * 109.46698 * 59.99657 * 9 7 6 41 41 H 1.08999 * 109.47182 * 179.97438 * 10 9 7 42 42 H 1.09002 * 109.46825 * 59.99702 * 10 9 7 43 43 H 1.09002 * 109.46817 * 299.99436 * 11 10 9 44 44 H 1.09001 * 109.47128 * 180.02562 * 11 10 9 45 45 H 1.09005 * 109.46705 * 180.02562 * 12 11 10 46 46 H 1.08998 * 109.46508 * 60.00302 * 12 11 10 47 47 H 1.00896 * 110.99723 * 81.03846 * 15 13 7 48 48 H 1.09000 * 109.47283 * 59.99980 * 16 15 13 49 49 H 1.09002 * 109.47562 * 299.99300 * 16 15 13 50 50 H 1.09007 * 109.46516 * 304.99789 * 17 16 15 51 51 H 1.09004 * 109.47113 * 185.00258 * 17 16 15 52 52 H 1.09002 * 109.47382 * 59.99956 * 19 18 17 53 53 H 1.09001 * 109.46938 * 299.99942 * 19 18 17 54 54 H 0.97002 * 119.99768 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.8311 1.1880 6 8 4.0410 -1.5053 2.3545 7 6 5.4609 -1.6606 2.3971 8 1 5.9330 -0.8330 1.8677 9 6 5.8497 -2.9813 1.7293 10 6 5.1870 -4.1430 2.4724 11 6 5.6558 -4.1504 3.9288 12 6 5.2671 -2.8299 4.5965 13 6 5.9297 -1.6682 3.8535 14 1 7.0128 -1.7872 3.8859 15 7 5.5565 -0.4003 4.4947 16 6 6.4447 -0.1009 5.6257 17 6 6.0253 1.2235 6.2668 18 8 4.7218 1.0855 6.8360 19 6 4.2329 2.2727 7.4634 20 6 2.8585 2.0144 8.0251 21 1 2.4041 1.0409 7.9145 22 6 2.1817 3.0206 8.6812 23 7 2.7352 4.2058 8.8164 24 14 0.4785 2.7002 9.3781 25 1 0.0839 1.2967 9.0957 26 1 0.4943 2.9235 10.8462 27 1 -0.4967 3.6255 8.7471 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6054 -1.7198 1.2952 36 1 1.7516 -0.1584 2.1370 37 1 3.9994 0.1674 1.1421 38 1 3.8532 -1.3941 0.3004 39 1 6.9328 -3.0995 1.7614 40 1 5.5156 -2.9758 0.6917 41 1 5.4636 -5.0837 1.9964 42 1 4.1040 -4.0244 2.4400 43 1 6.7389 -4.2690 3.9612 44 1 5.1841 -4.9784 4.4581 45 1 5.6015 -2.8351 5.6340 46 1 4.1840 -2.7114 4.5641 47 1 4.5908 -0.4134 4.7868 48 1 7.4722 -0.0236 5.2702 49 1 6.3748 -0.8997 6.3640 50 1 6.0093 2.0057 5.5077 51 1 6.7367 1.4903 7.0484 52 1 4.1796 3.0763 6.7289 53 1 4.9070 2.5615 8.2697 54 1 2.2589 4.9138 9.2776 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339155125.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:46 Heat of formation + Delta-G solvation = -155.595222 kcal Electronic energy + Delta-G solvation = -27488.484208 eV Core-core repulsion = 23843.797600 eV Total energy + Delta-G solvation = -3644.686609 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 313.240 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.61493 -38.82385 -38.09688 -36.57212 -35.72360 -34.81616 -31.49181 -31.29045 -29.91826 -29.19179 -28.03705 -27.52370 -24.54048 -24.15954 -23.45458 -22.99154 -22.36903 -20.92182 -20.49923 -18.65898 -17.52714 -17.27631 -17.09560 -16.88551 -16.72484 -16.40037 -15.91147 -15.75572 -15.37644 -15.08903 -14.78171 -14.71457 -14.57458 -14.19682 -13.93415 -13.77231 -13.38256 -13.36819 -13.14972 -13.07179 -12.95440 -12.89863 -12.66849 -12.65137 -12.45769 -12.35254 -12.31203 -12.01994 -11.88959 -11.72500 -11.62188 -11.53488 -11.35974 -11.31352 -11.27759 -11.05275 -10.88596 -10.25675 -10.19052 -9.22925 -8.33438 -6.45600 1.38188 1.39712 1.54389 2.33510 2.82406 3.00376 3.16272 3.23578 3.81467 3.86058 3.94147 4.01756 4.08283 4.11916 4.18714 4.28502 4.30269 4.33980 4.39530 4.46813 4.49899 4.55475 4.57627 4.61672 4.63498 4.75821 4.78698 4.80473 4.82892 4.86513 4.93001 4.96778 4.98749 5.00931 5.04452 5.13955 5.14058 5.16524 5.21903 5.25253 5.28734 5.32320 5.40249 5.43957 5.51832 5.53753 5.56416 5.94777 6.17435 6.41328 6.51112 6.52730 6.81183 7.26372 8.79253 Molecular weight = 313.24amu Principal moments of inertia in cm(-1) A = 0.008421 B = 0.003717 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3324.372955 B = 7531.388502 C = 9647.418804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.087 4.087 3 C -0.152 4.152 4 C -0.111 4.111 5 C 0.066 3.934 6 O -0.391 6.391 7 C 0.102 3.898 8 H 0.061 0.939 9 C -0.134 4.134 10 C -0.110 4.110 11 C -0.109 4.109 12 C -0.141 4.141 13 C 0.093 3.907 14 H 0.099 0.901 15 N -0.688 5.688 16 C 0.075 3.925 17 C 0.055 3.945 18 O -0.409 6.409 19 C 0.212 3.788 20 C -0.546 4.546 21 H 0.059 0.941 22 C 0.008 3.992 23 N -0.930 5.930 24 Si 0.982 3.018 25 H -0.266 1.266 26 H -0.270 1.270 27 H -0.271 1.271 28 H 0.044 0.956 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.041 0.959 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.047 0.953 37 H 0.043 0.957 38 H 0.057 0.943 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.051 0.949 43 H 0.073 0.927 44 H 0.061 0.939 45 H 0.049 0.951 46 H 0.048 0.952 47 H 0.343 0.657 48 H 0.106 0.894 49 H 0.031 0.969 50 H 0.041 0.959 51 H 0.048 0.952 52 H -0.017 1.017 53 H -0.015 1.015 54 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.409 -15.049 -19.841 25.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.106 4.106 3 C -0.210 4.210 4 C -0.149 4.149 5 C -0.010 4.010 6 O -0.310 6.310 7 C 0.044 3.956 8 H 0.079 0.921 9 C -0.172 4.172 10 C -0.148 4.148 11 C -0.147 4.147 12 C -0.180 4.180 13 C -0.017 4.017 14 H 0.117 0.883 15 N -0.318 5.318 16 C -0.054 4.054 17 C -0.023 4.023 18 O -0.329 6.329 19 C 0.137 3.863 20 C -0.584 4.584 21 H 0.078 0.922 22 C -0.191 4.191 23 N -0.569 5.569 24 Si 0.804 3.196 25 H -0.190 1.190 26 H -0.195 1.195 27 H -0.196 1.196 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.076 0.924 39 H 0.104 0.896 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.070 0.930 43 H 0.092 0.908 44 H 0.080 0.920 45 H 0.068 0.932 46 H 0.067 0.933 47 H 0.161 0.839 48 H 0.124 0.876 49 H 0.050 0.950 50 H 0.059 0.941 51 H 0.066 0.934 52 H 0.001 0.999 53 H 0.003 0.997 54 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.524 -14.698 -20.068 25.481 hybrid contribution -0.777 0.230 1.249 1.489 sum 4.747 -14.468 -18.819 24.208 Atomic orbital electron populations 1.21831 0.94603 1.02091 1.01912 1.21013 0.96210 0.96005 0.97342 1.21932 1.01137 0.96139 1.01749 1.21548 0.93958 1.00962 0.98419 1.22567 0.94875 0.95665 0.87939 1.87897 1.21843 1.78278 1.42993 1.22130 0.81350 0.96904 0.95198 0.92133 1.22011 1.01614 0.94179 0.99413 1.21385 1.00247 0.98174 0.94968 1.21444 1.01471 0.95879 0.95909 1.22101 1.00533 0.96489 0.98850 1.21756 0.99719 0.87141 0.93040 0.88290 1.60580 1.07863 1.33298 1.30044 1.21959 0.97614 0.94294 0.91533 1.22612 0.85102 0.98591 0.95949 1.87769 1.32710 1.37439 1.74967 1.19778 0.93705 0.82676 0.90104 1.21395 1.01526 0.98674 1.36812 0.92230 1.25938 1.03161 0.94194 0.95783 1.70075 1.40174 1.03568 1.43122 0.85162 0.77545 0.78683 0.78181 1.18979 1.19481 1.19577 0.93665 0.91508 0.92157 0.89824 0.93987 0.92581 0.91524 0.91441 0.93412 0.93899 0.92444 0.89575 0.91094 0.90731 0.93024 0.90815 0.92043 0.93233 0.93331 0.83872 0.87583 0.95043 0.94116 0.93374 0.99913 0.99703 0.92028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.19 71.98 0.66 -1.84 16 2 C -0.09 -1.56 2.92 -10.79 -0.03 -1.60 16 3 C -0.15 -2.91 8.95 71.98 0.64 -2.27 16 4 C -0.11 -2.48 5.05 30.59 0.15 -2.33 16 5 C 0.07 1.47 5.50 71.98 0.40 1.86 16 6 O -0.39 -10.24 8.50 -148.98 -1.27 -11.50 16 7 C 0.10 2.25 2.57 30.60 0.08 2.33 16 8 H 0.06 1.34 7.79 -2.39 -0.02 1.32 16 9 C -0.13 -2.18 5.63 30.60 0.17 -2.01 16 10 C -0.11 -1.90 5.78 30.59 0.18 -1.72 16 11 C -0.11 -2.00 5.92 30.59 0.18 -1.82 16 12 C -0.14 -3.44 5.03 30.59 0.15 -3.28 16 13 C 0.09 2.23 2.25 44.91 0.10 2.33 16 14 H 0.10 2.00 7.80 -2.39 -0.02 1.98 16 15 N -0.69 -21.29 6.12 -491.57 -3.01 -24.29 16 16 C 0.08 2.27 5.90 86.31 0.51 2.78 16 17 C 0.05 2.12 6.28 71.99 0.45 2.57 16 18 O -0.41 -20.66 9.85 -148.98 -1.47 -22.12 16 19 C 0.21 12.37 5.69 71.24 0.41 12.77 16 20 C -0.55 -33.51 9.43 25.60 0.24 -33.26 16 21 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 22 C 0.01 0.45 5.46 84.66 0.46 0.92 16 23 N -0.93 -56.98 13.29 21.45 0.28 -56.69 16 24 Si 0.98 45.42 29.54 68.60 2.03 47.44 16 25 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 26 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 27 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 28 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.06 1.06 6.56 -2.38 -0.02 1.05 16 34 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.04 1.01 6.51 -2.39 -0.02 1.00 16 38 H 0.06 1.04 7.87 -2.39 -0.02 1.02 16 39 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.07 1.05 7.87 -2.38 -0.02 1.03 16 41 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.05 1.09 7.68 -2.39 -0.02 1.07 16 43 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.05 1.29 7.45 -2.38 -0.02 1.27 16 46 H 0.05 1.44 7.67 -2.39 -0.02 1.42 16 47 H 0.34 12.90 8.03 -89.70 -0.72 12.18 16 48 H 0.11 2.52 8.06 -2.39 -0.02 2.50 16 49 H 0.03 0.97 7.43 -2.39 -0.02 0.95 16 50 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 51 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 52 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 53 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 54 H 0.27 15.30 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -67.59 417.28 1.43 -66.16 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: 0.10 Total: 25.58 kcal Atomic # 6 Polarization: -29.33 SS G_CDS: 4.76 Total: -24.57 kcal Atomic # 7 Polarization: -78.26 SS G_CDS: -2.72 Total: -80.99 kcal Atomic # 8 Polarization: -30.89 SS G_CDS: -2.73 Total: -33.63 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -67.59 1.43 -66.16 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339155125.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.436 kcal (2) G-P(sol) polarization free energy of solvation -67.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds