Wall clock time and date at job start Tue Mar 31 2020 11:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.54086 * 2 1 4 4 C 1.53102 * 109.50557 * 120.11093 * 2 1 3 5 5 N 1.47016 * 109.25606 * 63.08705 * 4 2 1 6 6 C 1.46903 * 110.99576 * 182.38923 * 5 4 2 7 7 C 1.53000 * 109.46805 * 170.00040 * 6 5 4 8 8 C 1.53005 * 109.47138 * 180.02562 * 7 6 5 9 9 N 1.46492 * 109.47070 * 179.97438 * 8 7 6 10 10 C 1.34783 * 119.99910 * 179.97438 * 9 8 7 11 11 O 1.21589 * 119.99833 * 0.02562 * 10 9 8 12 12 N 1.34774 * 119.99871 * 180.02562 * 10 9 8 13 13 C 1.46503 * 119.99917 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47368 * 179.97438 * 13 12 10 15 15 C 1.50695 * 109.47449 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99820 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00188 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00137 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 120.00027 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47248 * 89.99689 * 19 17 15 21 21 H 1.48499 * 109.46771 * 210.00115 * 19 17 15 22 22 H 1.48500 * 109.46932 * 329.99765 * 19 17 15 23 23 C 1.47012 * 110.75275 * 58.61648 * 5 4 2 24 24 C 1.53098 * 109.25866 * 301.38128 * 23 5 4 25 25 H 1.08998 * 109.50446 * 296.87270 * 24 23 5 26 26 C 1.53002 * 109.50461 * 176.78268 * 24 23 5 27 27 O 1.43014 * 109.25881 * 56.85080 * 24 23 5 28 28 H 1.08995 * 109.47375 * 299.88531 * 1 2 3 29 29 H 1.08999 * 109.47378 * 59.89140 * 1 2 3 30 30 H 1.09008 * 109.47095 * 179.89011 * 1 2 3 31 31 H 1.08999 * 109.50407 * 303.15625 * 4 2 1 32 32 H 1.09000 * 109.50181 * 183.02180 * 4 2 1 33 33 H 1.08994 * 109.47141 * 290.00331 * 6 5 4 34 34 H 1.09004 * 109.46868 * 50.00577 * 6 5 4 35 35 H 1.09003 * 109.47440 * 299.99803 * 7 6 5 36 36 H 1.08997 * 109.47199 * 60.00312 * 7 6 5 37 37 H 1.08994 * 109.46879 * 300.00335 * 8 7 6 38 38 H 1.09004 * 109.46797 * 60.00377 * 8 7 6 39 39 H 0.96999 * 120.00146 * 0.02562 * 9 8 7 40 40 H 0.97000 * 120.00264 * 359.97438 * 12 10 9 41 41 H 1.09002 * 109.46904 * 300.00221 * 13 12 10 42 42 H 1.09002 * 109.47121 * 59.99916 * 13 12 10 43 43 H 1.09002 * 109.46887 * 300.00120 * 14 13 12 44 44 H 1.09002 * 109.46949 * 59.99956 * 14 13 12 45 45 H 0.97006 * 120.00278 * 180.02562 * 18 17 15 46 46 H 1.09003 * 109.50911 * 61.31598 * 23 5 4 47 47 H 1.08997 * 109.50825 * 181.40259 * 23 5 4 48 48 H 1.08999 * 109.46851 * 60.00347 * 26 24 23 49 49 H 1.09003 * 109.46438 * 179.97438 * 26 24 23 50 50 H 1.08992 * 109.47309 * 299.99877 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0412 -0.7240 1.2484 5 7 1.6109 -2.1291 1.2043 6 6 2.0336 -2.8472 2.4142 7 6 1.3630 -4.2219 2.4517 8 6 1.8027 -4.9696 3.7121 9 7 1.1601 -6.2856 3.7483 10 6 1.4017 -7.1255 4.7744 11 8 2.1526 -6.7907 5.6702 12 7 0.8109 -8.3364 4.8074 13 6 1.0730 -9.2492 5.9230 14 6 0.2847 -10.5443 5.7184 15 6 0.5548 -11.4834 6.8655 16 1 1.2218 -11.1860 7.6613 17 6 -0.0494 -12.7222 6.8993 18 7 -0.8611 -13.0846 5.9301 19 14 0.2849 -13.8861 8.3218 20 1 -0.7078 -13.6479 9.4001 21 1 0.1753 -15.2896 7.8491 22 1 1.6531 -13.6459 8.8467 23 6 2.1185 -2.7916 -0.0059 24 6 1.6065 -2.0469 -1.2417 25 1 0.5188 -2.1071 -1.2782 26 6 2.1961 -2.6830 -2.5021 27 8 2.0076 -0.6762 -1.1662 28 1 -0.3634 0.5120 0.8910 29 1 -0.3634 0.5155 -0.8890 30 1 -0.3634 -1.0277 -0.0020 31 1 1.6330 -0.2461 2.1390 32 1 3.1299 -0.6773 1.2759 33 1 3.1164 -2.9713 2.4034 34 1 1.7420 -2.2765 3.2959 35 1 0.2801 -4.0978 2.4625 36 1 1.6546 -4.7925 1.5700 37 1 2.8855 -5.0937 3.7018 38 1 1.5107 -4.3988 4.5936 39 1 0.5613 -6.5528 3.0335 40 1 0.2116 -8.6034 4.0929 41 1 2.1386 -9.4747 5.9651 42 1 0.7638 -8.7797 6.8569 43 1 -0.7808 -10.3183 5.6765 44 1 0.5935 -11.0139 4.7844 45 1 -1.2866 -13.9560 5.9540 46 1 3.2085 -2.7781 0.0016 47 1 1.7676 -3.8232 -0.0305 48 1 1.8933 -3.7287 -2.5571 49 1 1.8308 -2.1526 -3.3816 50 1 3.2837 -2.6211 -2.4657 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343623708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:18 Heat of formation + Delta-G solvation = -90.590748 kcal Electronic energy + Delta-G solvation = -25660.566131 eV Core-core repulsion = 21915.157984 eV Total energy + Delta-G solvation = -3745.408147 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.46568 -39.54345 -37.02753 -35.27100 -34.51099 -33.82173 -32.85529 -31.83919 -30.32399 -29.29259 -27.35776 -26.47122 -24.70253 -23.58374 -22.80380 -21.50769 -21.01667 -20.44651 -19.88639 -17.93237 -17.00957 -16.85402 -16.36027 -16.28462 -15.76266 -15.47214 -15.28948 -14.96672 -14.59999 -14.50337 -14.47389 -13.78056 -13.56528 -13.48671 -13.26915 -12.89077 -12.78200 -12.48861 -12.33776 -12.29648 -12.24782 -12.12932 -11.76199 -11.66700 -11.43112 -11.17550 -11.07644 -10.99945 -10.66246 -10.62248 -10.30154 -9.99208 -9.91232 -9.54496 -9.25074 -9.00868 -8.81347 -8.47286 -8.22820 -6.08271 -4.10801 2.97252 3.27958 3.30429 3.36425 3.40159 3.42810 3.61532 4.29708 4.38947 4.40517 4.44949 4.59644 4.67083 4.70187 4.73303 4.84036 4.91744 4.93856 4.99041 5.12359 5.14650 5.21828 5.26462 5.28855 5.30052 5.36088 5.49157 5.52928 5.54532 5.64396 5.71423 5.85971 5.90318 5.91651 6.31663 6.41441 6.49551 6.50710 6.63334 6.79382 6.81710 7.02048 7.25675 7.58232 7.64652 7.91023 8.27278 8.45577 8.94093 9.01961 9.53884 11.03378 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.031902 B = 0.001669 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.487445 B =16770.505906 C =17191.957827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.090 3.910 3 H 0.104 0.896 4 C 0.023 3.977 5 N -0.533 5.533 6 C 0.059 3.941 7 C -0.127 4.127 8 C 0.142 3.858 9 N -0.754 5.754 10 C 0.698 3.302 11 O -0.599 6.599 12 N -0.739 5.739 13 C 0.140 3.860 14 C 0.013 3.987 15 C -0.520 4.520 16 H 0.060 0.940 17 C 0.058 3.942 18 N -0.895 5.895 19 Si 0.897 3.103 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.272 1.272 23 C 0.020 3.980 24 C 0.086 3.914 25 H 0.070 0.930 26 C -0.146 4.146 27 O -0.379 6.379 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.042 0.958 33 H 0.039 0.961 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.394 0.606 40 H 0.393 0.607 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.022 0.978 44 H 0.022 0.978 45 H 0.262 0.738 46 H 0.043 0.957 47 H 0.089 0.911 48 H 0.073 0.927 49 H 0.065 0.935 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.081 26.573 -17.090 31.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.032 3.968 3 H 0.122 0.878 4 C -0.105 4.105 5 N -0.258 5.258 6 C -0.069 4.069 7 C -0.165 4.165 8 C 0.017 3.983 9 N -0.411 5.411 10 C 0.397 3.603 11 O -0.478 6.478 12 N -0.392 5.392 13 C 0.017 3.983 14 C -0.025 4.025 15 C -0.559 4.559 16 H 0.078 0.922 17 C -0.143 4.143 18 N -0.534 5.534 19 Si 0.725 3.275 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.197 1.197 23 C -0.108 4.108 24 C 0.028 3.972 25 H 0.088 0.912 26 C -0.203 4.203 27 O -0.298 6.298 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.105 0.895 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.227 0.773 40 H 0.226 0.774 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.040 0.960 44 H 0.040 0.960 45 H 0.071 0.929 46 H 0.061 0.939 47 H 0.107 0.893 48 H 0.092 0.908 49 H 0.084 0.916 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.287 26.796 -16.434 31.606 hybrid contribution 0.266 -1.078 0.359 1.167 sum 3.553 25.718 -16.076 30.537 Atomic orbital electron populations 1.22285 0.95421 1.03540 1.02064 1.22248 0.94490 0.95820 0.84210 0.87833 1.22796 0.98745 0.89404 0.99590 1.62180 1.59609 1.01825 1.02186 1.22016 0.97789 0.94530 0.92612 1.21776 1.02044 0.94984 0.97730 1.20999 0.97372 0.82508 0.97433 1.45090 1.52664 1.17294 1.26034 1.16070 0.81111 0.80829 0.82248 1.90887 1.41322 1.76812 1.38815 1.45534 1.50143 1.15442 1.28126 1.21588 1.00257 0.89877 0.86569 1.19327 0.95331 0.89816 0.98019 1.21057 1.27802 0.99940 1.07116 0.92214 1.24997 0.94987 0.98100 0.96248 1.69956 1.30064 1.21105 1.32232 0.86506 0.78819 0.79918 0.82272 1.20571 1.21192 1.19729 1.22903 0.98362 0.99335 0.90220 1.22164 0.99114 0.81655 0.94251 0.91193 1.21759 1.01817 1.00432 0.96327 1.88044 1.75583 1.23271 1.42894 0.91668 0.92408 0.90912 0.89477 0.93926 0.94226 0.90084 0.90270 0.91286 0.92031 0.91791 0.77263 0.77399 0.92809 0.92807 0.95963 0.95965 0.92879 0.93901 0.89280 0.90805 0.91551 0.91906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.08 8.89 37.16 0.33 -0.75 16 2 C 0.09 0.60 3.92 -26.68 -0.10 0.50 16 3 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 4 C 0.02 0.15 5.06 -3.71 -0.02 0.13 16 5 N -0.53 -3.83 4.10 -234.30 -0.96 -4.79 16 6 C 0.06 0.42 4.96 -3.82 -0.02 0.40 16 7 C -0.13 -0.95 5.26 -26.73 -0.14 -1.09 16 8 C 0.14 1.52 5.67 -4.04 -0.02 1.50 16 9 N -0.75 -9.47 5.56 -65.23 -0.36 -9.84 16 10 C 0.70 12.40 8.57 -86.91 -0.74 11.66 16 11 O -0.60 -13.17 16.34 5.29 0.09 -13.08 16 12 N -0.74 -13.25 5.56 -65.22 -0.36 -13.61 16 13 C 0.14 3.05 5.61 -4.04 -0.02 3.03 16 14 C 0.01 0.31 5.09 -27.89 -0.14 0.17 16 15 C -0.52 -14.55 9.11 -34.45 -0.31 -14.86 16 16 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 19 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 C 0.02 0.14 4.72 -3.71 -0.02 0.12 16 24 C 0.09 0.61 3.02 -26.68 -0.08 0.53 16 25 H 0.07 0.50 6.49 -51.93 -0.34 0.16 16 26 C -0.15 -0.85 9.57 37.16 0.36 -0.49 16 27 O -0.38 -3.24 10.28 -35.23 -0.36 -3.60 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.52 6.12 -51.92 -0.32 0.20 16 31 H 0.09 0.49 8.09 -51.93 -0.42 0.07 16 32 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.04 0.30 8.12 -51.93 -0.42 -0.13 16 34 H 0.08 0.55 8.04 -51.93 -0.42 0.14 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.49 6.51 -51.93 -0.34 0.15 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.39 3.82 8.49 -40.82 -0.35 3.47 16 40 H 0.39 6.01 8.49 -40.82 -0.35 5.66 16 41 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 46 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.09 0.57 6.38 -51.93 -0.33 0.24 16 48 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 49 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 50 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 395.81 15.07 5.96 5.96 Total: -1.00 -33.26 395.81 -10.48 -43.74 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -9.16 Total: 1.82 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -1.04 Total: 2.40 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: -0.95 Total: -53.69 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.28 Total: -16.68 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.26 -10.48 -43.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343623708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.848 kcal (2) G-P(sol) polarization free energy of solvation -33.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds