Wall clock time and date at job start Tue Mar 31 2020 11:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.46656 * 2 1 4 4 N 1.46891 * 109.46990 * 119.99607 * 2 1 3 5 5 C 1.46900 * 111.00444 * 276.64729 * 4 2 1 6 6 C 1.52998 * 109.47542 * 183.11006 * 5 4 2 7 7 C 1.50693 * 115.55216 * 179.14155 * 6 5 4 8 8 H 1.08003 * 120.00285 * 214.90350 * 7 6 5 9 9 C 1.37877 * 120.00220 * 34.90469 * 7 6 5 10 10 N 1.31513 * 119.99822 * 9.93890 * 9 7 6 11 11 Si 1.86800 * 120.00069 * 189.93838 * 9 7 6 12 12 H 1.48495 * 109.47099 * 275.00010 * 11 9 7 13 13 H 1.48495 * 109.47070 * 35.00366 * 11 9 7 14 14 H 1.48501 * 109.46961 * 155.00000 * 11 9 7 15 15 C 1.53002 * 117.49890 * 324.81632 * 6 5 4 16 16 C 1.53008 * 117.49553 * 33.47132 * 6 5 4 17 17 C 1.52990 * 109.46957 * 240.00098 * 2 1 3 18 18 C 1.50704 * 110.01749 * 175.65619 * 17 2 1 19 19 C 1.38240 * 119.99691 * 353.26779 * 18 17 2 20 20 C 1.38231 * 119.99561 * 179.78962 * 19 18 17 21 21 C 1.38240 * 120.00481 * 0.45803 * 20 19 18 22 22 C 1.38233 * 119.99519 * 359.77385 * 21 20 19 23 23 C 1.38232 * 120.00302 * 173.53997 * 18 17 2 24 24 C 1.53875 * 110.03864 * 54.21418 * 17 2 1 25 25 C 1.54264 * 106.59915 * 240.71664 * 24 17 2 26 26 C 1.54889 * 104.19821 * 23.60675 * 25 24 17 27 27 C 1.54264 * 110.03206 * 297.04421 * 17 2 1 28 28 H 1.08989 * 109.47282 * 185.86022 * 1 2 3 29 29 H 1.09004 * 109.47346 * 305.86098 * 1 2 3 30 30 H 1.09003 * 109.47115 * 65.85734 * 1 2 3 31 31 H 1.00906 * 110.99788 * 152.69498 * 4 2 1 32 32 H 1.09007 * 109.46849 * 63.11547 * 5 4 2 33 33 H 1.09000 * 109.47253 * 303.11587 * 5 4 2 34 34 H 0.96992 * 120.00163 * 174.99475 * 10 9 7 35 35 H 1.09000 * 117.49773 * 215.00218 * 15 6 5 36 36 H 1.09003 * 117.49805 * 0.02562 * 15 6 5 37 37 H 1.09004 * 117.49906 * 359.97438 * 16 6 5 38 38 H 1.08999 * 117.49453 * 144.96925 * 16 6 5 39 39 H 1.08002 * 119.99764 * 359.97438 * 19 18 17 40 40 H 1.08004 * 120.00090 * 180.25418 * 20 19 18 41 41 H 1.07997 * 120.00257 * 179.79260 * 21 20 19 42 42 H 1.08000 * 119.99825 * 179.97438 * 22 21 20 43 43 H 1.08000 * 120.00016 * 359.97438 * 23 18 17 44 44 H 1.09005 * 110.02945 * 359.97438 * 24 17 2 45 45 H 1.09002 * 110.03578 * 121.42890 * 24 17 2 46 46 H 1.08997 * 110.48582 * 264.92678 * 25 24 17 47 47 H 1.09003 * 110.48217 * 142.28594 * 25 24 17 48 48 H 1.08999 * 110.75945 * 203.74361 * 26 25 24 49 49 H 1.08999 * 110.75756 * 80.37038 * 26 25 24 50 50 H 1.09001 * 110.49068 * 214.35256 * 27 17 2 51 51 H 1.09001 * 110.48779 * 336.86546 * 27 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0196 -0.6924 1.1994 5 6 2.0455 0.2127 2.3562 6 6 2.6322 -0.5202 3.5643 7 6 2.7412 0.2934 4.8281 8 1 3.5709 0.1366 5.5014 9 6 1.7815 1.2378 5.1249 10 7 0.6754 1.2966 4.4160 11 14 2.0526 2.4339 6.5339 12 1 1.6225 1.8037 7.8078 13 1 3.4934 2.7835 6.6161 14 1 1.2571 3.6655 6.2976 15 6 2.3165 -2.0103 3.7083 16 6 3.7213 -1.5614 3.2982 17 6 2.0399 -0.7212 -1.2492 18 6 3.5431 -0.6362 -1.3165 19 6 4.2327 0.1432 -0.4065 20 6 5.6117 0.2177 -0.4655 21 6 6.3006 -0.4796 -1.4403 22 6 5.6106 -1.2551 -2.3532 23 6 4.2318 -1.3330 -2.2916 24 6 1.4187 -0.0950 -2.5100 25 6 0.6176 -1.2132 -3.2084 26 6 0.2987 -2.2178 -2.0735 27 6 1.5948 -2.1980 -1.2255 28 1 -0.3633 -1.0222 0.1049 29 1 -0.3634 0.6020 0.8329 30 1 -0.3633 0.4203 -0.9378 31 1 2.9294 -1.0976 1.0370 32 1 1.0306 0.5375 2.5861 33 1 2.6612 1.0816 2.1240 34 1 -0.0308 1.9115 4.6691 35 1 2.1876 -2.4022 4.7172 36 1 1.6911 -2.4686 2.9422 37 1 4.0194 -1.7246 2.2625 38 1 4.5168 -1.6576 4.0372 39 1 3.6941 0.6914 0.3524 40 1 6.1508 0.8233 0.2480 41 1 7.3778 -0.4187 -1.4885 42 1 6.1487 -1.7995 -3.1151 43 1 3.6928 -1.9387 -3.0050 44 1 0.7535 0.7225 -2.2319 45 1 2.2043 0.2704 -3.1714 46 1 1.2213 -1.6894 -3.9810 47 1 -0.3029 -0.8139 -3.6343 48 1 0.1172 -3.2133 -2.4784 49 1 -0.5533 -1.8778 -1.4847 50 1 2.3562 -2.8334 -1.6778 51 1 1.3896 -2.5183 -0.2040 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344078689.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:42 Heat of formation + Delta-G solvation = 49.612659 kcal Electronic energy + Delta-G solvation = -27867.463647 eV Core-core repulsion = 24538.984439 eV Total energy + Delta-G solvation = -3328.479208 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.58011 -37.86125 -36.99440 -34.22179 -32.14312 -31.44648 -30.65117 -29.45443 -28.59017 -26.93618 -25.85816 -24.31970 -22.69793 -22.04742 -21.05656 -20.90369 -20.42198 -18.62897 -18.41708 -17.10883 -16.39142 -15.65002 -15.27665 -15.07988 -14.67155 -14.43524 -14.20175 -13.93202 -13.66052 -13.35141 -13.16078 -12.86472 -12.69791 -12.32363 -11.89673 -11.76806 -11.52380 -11.41010 -11.24045 -11.21142 -11.05138 -10.98857 -10.96264 -10.82109 -10.72354 -10.56204 -10.48994 -10.32027 -10.21437 -10.07288 -9.71312 -9.15672 -8.99233 -8.76669 -8.61528 -8.48218 -8.00612 -7.35756 -5.99396 -4.05696 1.50251 1.54568 3.27133 3.34172 3.38143 3.91098 4.36871 4.62681 4.66891 4.78648 5.03751 5.05559 5.11387 5.14569 5.21187 5.25988 5.38633 5.58185 5.59547 5.62722 5.68173 5.68891 5.76955 5.79487 5.94672 5.95885 6.02855 6.07226 6.12194 6.18831 6.19099 6.27091 6.31483 6.41806 6.46092 6.51473 6.57221 6.61703 6.66771 6.68964 6.71993 6.78977 6.81588 6.89034 7.05989 7.16039 7.22659 7.35522 7.55729 7.67610 8.03918 8.13174 8.41152 8.54212 8.92673 9.54027 10.98987 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.014201 B = 0.004644 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.270220 B = 6027.366855 C = 6994.947443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.099 3.901 3 H 0.036 0.964 4 N -0.688 5.688 5 C 0.093 3.907 6 C 0.056 3.944 7 C -0.489 4.489 8 H 0.059 0.941 9 C 0.070 3.930 10 N -0.879 5.879 11 Si 0.893 3.107 12 H -0.280 1.280 13 H -0.274 1.274 14 H -0.285 1.285 15 C -0.189 4.189 16 C -0.218 4.218 17 C -0.023 4.023 18 C -0.062 4.062 19 C -0.123 4.123 20 C -0.113 4.113 21 C -0.130 4.130 22 C -0.123 4.123 23 C -0.118 4.118 24 C -0.113 4.113 25 C -0.121 4.121 26 C -0.128 4.128 27 C -0.110 4.110 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.049 0.951 31 H 0.329 0.671 32 H 0.128 0.872 33 H 0.003 0.997 34 H 0.261 0.739 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.129 0.871 40 H 0.120 0.880 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.118 0.882 44 H 0.073 0.927 45 H 0.061 0.939 46 H 0.059 0.941 47 H 0.061 0.939 48 H 0.059 0.941 49 H 0.075 0.925 50 H 0.060 0.940 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.792 -3.687 -16.235 16.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.011 4.011 3 H 0.053 0.947 4 N -0.323 5.323 5 C -0.035 4.035 6 C 0.055 3.945 7 C -0.527 4.527 8 H 0.077 0.923 9 C -0.132 4.132 10 N -0.517 5.517 11 Si 0.720 3.280 12 H -0.206 1.206 13 H -0.199 1.199 14 H -0.211 1.211 15 C -0.227 4.227 16 C -0.256 4.256 17 C -0.024 4.024 18 C -0.062 4.062 19 C -0.141 4.141 20 C -0.131 4.131 21 C -0.148 4.148 22 C -0.141 4.141 23 C -0.136 4.136 24 C -0.151 4.151 25 C -0.159 4.159 26 C -0.165 4.165 27 C -0.147 4.147 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.150 0.850 32 H 0.145 0.855 33 H 0.021 0.979 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.147 0.853 40 H 0.138 0.862 41 H 0.134 0.866 42 H 0.134 0.866 43 H 0.136 0.864 44 H 0.091 0.909 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.080 0.920 48 H 0.078 0.922 49 H 0.094 0.906 50 H 0.078 0.922 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.032 -3.775 -16.116 16.677 hybrid contribution 1.127 1.137 0.651 1.728 sum 3.159 -2.638 -15.466 16.004 Atomic orbital electron populations 1.21957 0.94807 1.02480 1.00576 1.21383 0.95838 0.95028 0.88890 0.94668 1.60889 1.31851 1.35834 1.03684 1.21886 1.04572 0.90661 0.86353 1.19002 0.94191 0.86859 0.94409 1.20578 1.09212 1.18093 1.04772 0.92318 1.24968 0.94993 0.96841 0.96433 1.69750 1.05497 1.37611 1.38848 0.86590 0.78334 0.80736 0.82310 1.20578 1.19900 1.21107 1.22855 0.96738 1.03616 0.99507 1.22870 0.92575 1.11588 0.98570 1.20353 0.89814 0.96767 0.95422 1.19911 0.95120 0.96261 0.94935 1.21453 0.94517 0.99061 0.99038 1.21181 0.94441 0.99310 0.98170 1.21088 0.99552 0.98166 0.95984 1.21058 0.94322 0.99501 0.99240 1.20921 0.93984 0.99926 0.98742 1.22344 0.99076 0.98343 0.95364 1.22333 0.99335 0.96532 0.97665 1.22651 0.98648 0.98485 0.96736 1.22506 0.96399 0.93913 1.01887 0.91751 0.92285 0.93255 0.84960 0.85483 0.97873 0.92851 0.91562 0.90364 0.91723 0.91434 0.85306 0.86186 0.86570 0.86587 0.86369 0.90883 0.92055 0.92199 0.92037 0.92210 0.90611 0.92173 0.89213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 7.85 37.16 0.29 -1.91 16 2 C 0.10 1.60 1.14 -67.72 -0.08 1.53 16 3 H 0.04 0.63 6.58 -51.92 -0.34 0.28 16 4 N -0.69 -13.00 3.84 -106.73 -0.41 -13.41 16 5 C 0.09 2.14 4.68 -3.83 -0.02 2.12 16 6 C 0.06 1.39 2.38 -155.66 -0.37 1.02 16 7 C -0.49 -13.37 9.05 -34.44 -0.31 -13.68 16 8 H 0.06 1.61 7.83 -52.48 -0.41 1.20 16 9 C 0.07 1.88 5.26 -17.82 -0.09 1.79 16 10 N -0.88 -24.05 10.62 55.43 0.59 -23.46 16 11 Si 0.89 20.86 29.55 -169.99 -5.02 15.83 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 14 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 15 C -0.19 -4.43 9.63 -26.69 -0.26 -4.69 16 16 C -0.22 -4.87 9.58 -26.69 -0.26 -5.13 16 17 C -0.02 -0.31 0.41 -154.55 -0.06 -0.38 16 18 C -0.06 -0.88 4.15 -104.62 -0.43 -1.31 16 19 C -0.12 -1.90 7.69 -39.58 -0.30 -2.21 16 20 C -0.11 -1.60 10.05 -39.58 -0.40 -1.99 16 21 C -0.13 -1.61 10.05 -39.58 -0.40 -2.01 16 22 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 23 C -0.12 -1.48 8.36 -39.59 -0.33 -1.81 16 24 C -0.11 -1.34 5.38 -25.61 -0.14 -1.48 16 25 C -0.12 -1.24 6.83 -25.07 -0.17 -1.41 16 26 C -0.13 -1.42 6.38 -24.74 -0.16 -1.58 16 27 C -0.11 -1.43 5.14 -25.07 -0.13 -1.56 16 28 H 0.06 1.00 5.95 -51.94 -0.31 0.69 16 29 H 0.06 1.05 7.58 -51.93 -0.39 0.66 16 30 H 0.05 0.66 5.95 -51.93 -0.31 0.35 16 31 H 0.33 6.19 3.87 -39.29 -0.15 6.04 16 32 H 0.13 3.28 5.08 -51.93 -0.26 3.02 16 33 H 0.00 0.08 7.10 -51.93 -0.37 -0.29 16 34 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 35 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 36 H 0.08 1.77 7.61 -51.93 -0.40 1.38 16 37 H 0.06 1.34 6.26 -51.93 -0.33 1.02 16 38 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 39 H 0.13 2.25 4.27 -52.49 -0.22 2.03 16 40 H 0.12 1.58 8.06 -52.48 -0.42 1.16 16 41 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 42 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 43 H 0.12 1.30 7.39 -52.49 -0.39 0.91 16 44 H 0.07 0.88 5.94 -51.93 -0.31 0.57 16 45 H 0.06 0.72 7.46 -51.93 -0.39 0.33 16 46 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.08 0.89 5.86 -51.93 -0.30 0.58 16 50 H 0.06 0.75 6.51 -51.93 -0.34 0.41 16 51 H 0.09 1.37 6.91 -51.93 -0.36 1.01 16 LS Contribution 370.76 15.07 5.59 5.59 Total: -1.00 -26.92 370.76 -11.37 -38.29 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: -8.10 Total: 13.69 kcal Atomic # 6 Polarization: -32.51 SS G_CDS: -4.01 Total: -36.53 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: 0.18 Total: -36.87 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -26.92 -11.37 -38.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344078689.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.898 kcal (2) G-P(sol) polarization free energy of solvation -26.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds