Wall clock time and date at job start Tue Mar 31 2020 11:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.46656 * 2 1 4 4 N 1.46891 * 109.46990 * 119.99607 * 2 1 3 5 5 C 1.46900 * 111.00444 * 276.64729 * 4 2 1 6 6 C 1.52998 * 109.47542 * 183.11006 * 5 4 2 7 7 C 1.50693 * 115.55216 * 179.14155 * 6 5 4 8 8 H 1.08003 * 120.00285 * 214.90350 * 7 6 5 9 9 C 1.37877 * 120.00220 * 34.90469 * 7 6 5 10 10 N 1.31513 * 119.99822 * 9.93890 * 9 7 6 11 11 Si 1.86800 * 120.00069 * 189.93838 * 9 7 6 12 12 H 1.48495 * 109.47099 * 275.00010 * 11 9 7 13 13 H 1.48495 * 109.47070 * 35.00366 * 11 9 7 14 14 H 1.48501 * 109.46961 * 155.00000 * 11 9 7 15 15 C 1.53002 * 117.49890 * 324.81632 * 6 5 4 16 16 C 1.53008 * 117.49553 * 33.47132 * 6 5 4 17 17 C 1.52990 * 109.46957 * 240.00098 * 2 1 3 18 18 C 1.50704 * 110.01749 * 175.65619 * 17 2 1 19 19 C 1.38240 * 119.99691 * 353.26779 * 18 17 2 20 20 C 1.38231 * 119.99561 * 179.78962 * 19 18 17 21 21 C 1.38240 * 120.00481 * 0.45803 * 20 19 18 22 22 C 1.38233 * 119.99519 * 359.77385 * 21 20 19 23 23 C 1.38232 * 120.00302 * 173.53997 * 18 17 2 24 24 C 1.53875 * 110.03864 * 54.21418 * 17 2 1 25 25 C 1.54264 * 106.59915 * 240.71664 * 24 17 2 26 26 C 1.54889 * 104.19821 * 23.60675 * 25 24 17 27 27 C 1.54264 * 110.03206 * 297.04421 * 17 2 1 28 28 H 1.08989 * 109.47282 * 185.86022 * 1 2 3 29 29 H 1.09004 * 109.47346 * 305.86098 * 1 2 3 30 30 H 1.09003 * 109.47115 * 65.85734 * 1 2 3 31 31 H 1.00906 * 110.99788 * 152.69498 * 4 2 1 32 32 H 1.09007 * 109.46849 * 63.11547 * 5 4 2 33 33 H 1.09000 * 109.47253 * 303.11587 * 5 4 2 34 34 H 0.96992 * 120.00163 * 174.99475 * 10 9 7 35 35 H 1.09000 * 117.49773 * 215.00218 * 15 6 5 36 36 H 1.09003 * 117.49805 * 0.02562 * 15 6 5 37 37 H 1.09004 * 117.49906 * 359.97438 * 16 6 5 38 38 H 1.08999 * 117.49453 * 144.96925 * 16 6 5 39 39 H 1.08002 * 119.99764 * 359.97438 * 19 18 17 40 40 H 1.08004 * 120.00090 * 180.25418 * 20 19 18 41 41 H 1.07997 * 120.00257 * 179.79260 * 21 20 19 42 42 H 1.08000 * 119.99825 * 179.97438 * 22 21 20 43 43 H 1.08000 * 120.00016 * 359.97438 * 23 18 17 44 44 H 1.09005 * 110.02945 * 359.97438 * 24 17 2 45 45 H 1.09002 * 110.03578 * 121.42890 * 24 17 2 46 46 H 1.08997 * 110.48582 * 264.92678 * 25 24 17 47 47 H 1.09003 * 110.48217 * 142.28594 * 25 24 17 48 48 H 1.08999 * 110.75945 * 203.74361 * 26 25 24 49 49 H 1.08999 * 110.75756 * 80.37038 * 26 25 24 50 50 H 1.09001 * 110.49068 * 214.35256 * 27 17 2 51 51 H 1.09001 * 110.48779 * 336.86546 * 27 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0196 -0.6924 1.1994 5 6 2.0455 0.2127 2.3562 6 6 2.6322 -0.5202 3.5643 7 6 2.7412 0.2934 4.8281 8 1 3.5709 0.1366 5.5014 9 6 1.7815 1.2378 5.1249 10 7 0.6754 1.2966 4.4160 11 14 2.0526 2.4339 6.5339 12 1 1.6225 1.8037 7.8078 13 1 3.4934 2.7835 6.6161 14 1 1.2571 3.6655 6.2976 15 6 2.3165 -2.0103 3.7083 16 6 3.7213 -1.5614 3.2982 17 6 2.0399 -0.7212 -1.2492 18 6 3.5431 -0.6362 -1.3165 19 6 4.2327 0.1432 -0.4065 20 6 5.6117 0.2177 -0.4655 21 6 6.3006 -0.4796 -1.4403 22 6 5.6106 -1.2551 -2.3532 23 6 4.2318 -1.3330 -2.2916 24 6 1.4187 -0.0950 -2.5100 25 6 0.6176 -1.2132 -3.2084 26 6 0.2987 -2.2178 -2.0735 27 6 1.5948 -2.1980 -1.2255 28 1 -0.3633 -1.0222 0.1049 29 1 -0.3634 0.6020 0.8329 30 1 -0.3633 0.4203 -0.9378 31 1 2.9294 -1.0976 1.0370 32 1 1.0306 0.5375 2.5861 33 1 2.6612 1.0816 2.1240 34 1 -0.0308 1.9115 4.6691 35 1 2.1876 -2.4022 4.7172 36 1 1.6911 -2.4686 2.9422 37 1 4.0194 -1.7246 2.2625 38 1 4.5168 -1.6576 4.0372 39 1 3.6941 0.6914 0.3524 40 1 6.1508 0.8233 0.2480 41 1 7.3778 -0.4187 -1.4885 42 1 6.1487 -1.7995 -3.1151 43 1 3.6928 -1.9387 -3.0050 44 1 0.7535 0.7225 -2.2319 45 1 2.2043 0.2704 -3.1714 46 1 1.2213 -1.6894 -3.9810 47 1 -0.3029 -0.8139 -3.6343 48 1 0.1172 -3.2133 -2.4784 49 1 -0.5533 -1.8778 -1.4847 50 1 2.3562 -2.8334 -1.6778 51 1 1.3896 -2.5183 -0.2040 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344078689.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:42 Heat of formation + Delta-G solvation = 39.283978 kcal Electronic energy + Delta-G solvation = -27867.911532 eV Core-core repulsion = 24538.984439 eV Total energy + Delta-G solvation = -3328.927093 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.70013 -39.06460 -38.60288 -35.64646 -34.20594 -32.50583 -31.68406 -30.85778 -29.57553 -28.04134 -27.86244 -26.00452 -23.87090 -23.06673 -22.89293 -22.20578 -21.33995 -20.54363 -19.61368 -18.38404 -17.95813 -17.05366 -16.73856 -16.29840 -16.22845 -15.59001 -15.44326 -15.42391 -14.92822 -14.77076 -14.40933 -14.18744 -13.92834 -13.54810 -13.42932 -13.30259 -13.06680 -12.87337 -12.72633 -12.57448 -12.54644 -12.36488 -12.24678 -12.07764 -11.97963 -11.94893 -11.86439 -11.72394 -11.47912 -11.20278 -11.15489 -11.01291 -10.80685 -10.56468 -9.95445 -9.80217 -9.50983 -9.02825 -8.04814 -6.19472 0.48639 0.51213 1.38930 1.41258 1.50709 2.39347 2.89092 3.00028 3.42862 3.61640 3.69031 3.70367 3.96606 4.10267 4.15191 4.16108 4.28890 4.35694 4.37565 4.45543 4.53453 4.62649 4.64579 4.67686 4.70519 4.76653 4.80402 4.85416 4.93087 4.94806 5.00247 5.05486 5.08791 5.14383 5.17350 5.19679 5.24986 5.28976 5.34035 5.40853 5.45230 5.46735 5.55094 5.61674 5.64128 5.65721 5.67014 5.69033 5.77322 6.15076 6.17347 6.28035 6.54789 6.71625 6.89922 7.42745 8.91262 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.014201 B = 0.004644 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.270220 B = 6027.366855 C = 6994.947443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.099 3.901 3 H 0.013 0.987 4 N -0.678 5.678 5 C 0.116 3.884 6 C 0.024 3.976 7 C -0.517 4.517 8 H 0.049 0.951 9 C 0.028 3.972 10 N -0.899 5.899 11 Si 0.954 3.046 12 H -0.274 1.274 13 H -0.272 1.272 14 H -0.280 1.280 15 C -0.183 4.183 16 C -0.194 4.194 17 C -0.016 4.016 18 C -0.071 4.071 19 C -0.149 4.149 20 C -0.129 4.129 21 C -0.130 4.130 22 C -0.117 4.117 23 C -0.117 4.117 24 C -0.112 4.112 25 C -0.112 4.112 26 C -0.125 4.125 27 C -0.108 4.108 28 H 0.066 0.934 29 H 0.027 0.973 30 H 0.075 0.925 31 H 0.331 0.669 32 H 0.100 0.900 33 H -0.023 1.023 34 H 0.262 0.738 35 H 0.058 0.942 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.097 0.903 40 H 0.118 0.882 41 H 0.141 0.859 42 H 0.149 0.851 43 H 0.141 0.859 44 H 0.067 0.933 45 H 0.066 0.934 46 H 0.076 0.924 47 H 0.074 0.926 48 H 0.076 0.924 49 H 0.066 0.934 50 H 0.071 0.929 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.512 -4.948 -18.713 19.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.011 4.011 3 H 0.031 0.969 4 N -0.312 5.312 5 C -0.013 4.013 6 C 0.023 3.977 7 C -0.554 4.554 8 H 0.067 0.933 9 C -0.173 4.173 10 N -0.537 5.537 11 Si 0.779 3.221 12 H -0.200 1.200 13 H -0.197 1.197 14 H -0.206 1.206 15 C -0.221 4.221 16 C -0.232 4.232 17 C -0.017 4.017 18 C -0.071 4.071 19 C -0.167 4.167 20 C -0.147 4.147 21 C -0.148 4.148 22 C -0.135 4.135 23 C -0.135 4.135 24 C -0.150 4.150 25 C -0.150 4.150 26 C -0.162 4.162 27 C -0.145 4.145 28 H 0.085 0.915 29 H 0.046 0.954 30 H 0.094 0.906 31 H 0.152 0.848 32 H 0.118 0.882 33 H -0.005 1.005 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.115 0.885 40 H 0.136 0.864 41 H 0.159 0.841 42 H 0.167 0.833 43 H 0.159 0.841 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.095 0.905 47 H 0.093 0.907 48 H 0.095 0.905 49 H 0.085 0.915 50 H 0.090 0.910 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.751 -5.046 -18.601 19.469 hybrid contribution 0.946 1.522 1.402 2.275 sum 3.698 -3.524 -17.199 17.941 Atomic orbital electron populations 1.21897 0.94295 1.02133 1.00647 1.21429 0.96084 0.94174 0.89384 0.96862 1.60830 1.31814 1.34857 1.03708 1.21394 1.01995 0.90336 0.87542 1.19156 0.96551 0.87532 0.94470 1.20849 1.09263 1.19459 1.05866 0.93259 1.25662 0.94685 0.98078 0.98867 1.69902 1.05936 1.37987 1.39862 0.85636 0.78214 0.78690 0.79551 1.19997 1.19670 1.20558 1.22768 0.97740 1.02348 0.99271 1.22804 0.91847 1.09091 0.99421 1.20284 0.89876 0.97030 0.94481 1.19986 0.95263 0.96568 0.95323 1.21312 0.95272 1.00501 0.99601 1.21300 0.94057 1.00174 0.99206 1.21388 1.00869 0.97363 0.95161 1.21467 0.94189 0.98623 0.99239 1.21170 0.94573 0.99447 0.98313 1.22336 0.99273 0.98803 0.94541 1.22311 0.99879 0.95410 0.97381 1.22628 0.97106 0.99817 0.96659 1.22466 0.97879 0.93248 1.00928 0.91520 0.95412 0.90635 0.84756 0.88233 1.00456 0.92817 0.92380 0.89719 0.90149 0.91298 0.88511 0.86404 0.84102 0.83291 0.84149 0.91481 0.91574 0.90504 0.90690 0.90498 0.91491 0.91027 0.91833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.26 7.85 71.98 0.57 -3.69 16 2 C 0.10 3.35 1.14 44.91 0.05 3.40 16 3 H 0.01 0.52 6.58 -2.38 -0.02 0.50 16 4 N -0.68 -26.76 3.84 -491.59 -1.89 -28.65 16 5 C 0.12 5.68 4.68 86.30 0.40 6.08 16 6 C 0.02 1.22 2.38 -52.93 -0.13 1.09 16 7 C -0.52 -29.24 9.05 25.60 0.23 -29.01 16 8 H 0.05 2.79 7.83 -2.91 -0.02 2.77 16 9 C 0.03 1.52 5.26 84.65 0.45 1.97 16 10 N -0.90 -51.01 10.62 21.45 0.23 -50.78 16 11 Si 0.95 43.76 29.55 68.60 2.03 45.78 16 12 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 13 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 14 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 15 C -0.18 -8.75 9.63 30.62 0.29 -8.45 16 16 C -0.19 -8.76 9.58 30.62 0.29 -8.46 16 17 C -0.02 -0.43 0.41 -52.21 -0.02 -0.45 16 18 C -0.07 -1.95 4.15 -19.86 -0.08 -2.03 16 19 C -0.15 -4.74 7.69 22.27 0.17 -4.57 16 20 C -0.13 -3.66 10.05 22.27 0.22 -3.43 16 21 C -0.13 -2.93 10.05 22.27 0.22 -2.71 16 22 C -0.12 -2.37 10.05 22.27 0.22 -2.14 16 23 C -0.12 -2.60 8.36 22.27 0.19 -2.41 16 24 C -0.11 -2.42 5.38 31.32 0.17 -2.25 16 25 C -0.11 -1.90 6.83 31.67 0.22 -1.69 16 26 C -0.12 -2.45 6.38 31.89 0.20 -2.24 16 27 C -0.11 -2.63 5.14 31.67 0.16 -2.47 16 28 H 0.07 2.10 5.95 -2.39 -0.01 2.09 16 29 H 0.03 1.04 7.58 -2.39 -0.02 1.02 16 30 H 0.07 1.99 5.95 -2.39 -0.01 1.98 16 31 H 0.33 12.84 3.87 -89.69 -0.35 12.49 16 32 H 0.10 5.48 5.08 -2.38 -0.01 5.47 16 33 H -0.02 -1.19 7.10 -2.39 -0.02 -1.21 16 34 H 0.26 14.15 8.32 -92.71 -0.77 13.38 16 35 H 0.06 2.83 8.14 -2.39 -0.02 2.81 16 36 H 0.08 3.89 7.61 -2.39 -0.02 3.87 16 37 H 0.08 3.35 6.26 -2.38 -0.01 3.33 16 38 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 39 H 0.10 3.67 4.27 -2.91 -0.01 3.66 16 40 H 0.12 3.23 8.06 -2.91 -0.02 3.20 16 41 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 42 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 43 H 0.14 2.47 7.39 -2.91 -0.02 2.45 16 44 H 0.07 1.52 5.94 -2.38 -0.01 1.51 16 45 H 0.07 1.39 7.46 -2.39 -0.02 1.37 16 46 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 48 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 49 H 0.07 1.44 5.86 -2.39 -0.01 1.42 16 50 H 0.07 1.58 6.51 -2.39 -0.02 1.57 16 51 H 0.06 1.90 6.91 -2.39 -0.02 1.88 16 Total: -1.00 -60.41 370.76 4.78 -55.63 By element: Atomic # 1 Polarization: 40.91 SS G_CDS: 0.58 Total: 41.48 kcal Atomic # 6 Polarization: -67.30 SS G_CDS: 3.83 Total: -63.47 kcal Atomic # 7 Polarization: -77.77 SS G_CDS: -1.66 Total: -79.43 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Total: -60.41 4.78 -55.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344078689.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.912 kcal (2) G-P(sol) polarization free energy of solvation -60.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds