Wall clock time and date at job start Tue Mar 31 2020 10:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47371 * 2 1 4 4 C 1.52997 * 109.47228 * 239.99903 * 2 1 3 5 5 O 1.42906 * 109.47005 * 120.00322 * 2 1 3 6 6 C 1.42897 * 114.00406 * 59.99466 * 5 2 1 7 7 C 1.52998 * 109.47552 * 180.02562 * 6 5 2 8 8 H 1.09002 * 109.46857 * 54.99795 * 7 6 5 9 9 N 1.46901 * 109.46811 * 295.00506 * 7 6 5 10 10 C 1.50694 * 109.47223 * 175.00040 * 7 6 5 11 11 O 1.21285 * 119.99691 * 99.99663 * 10 7 6 12 12 N 1.34771 * 120.00219 * 280.00272 * 10 7 6 13 13 C 1.47086 * 120.88070 * 180.02562 * 12 10 7 14 14 C 1.53246 * 108.51814 * 231.16009 * 13 12 10 15 15 N 1.46902 * 109.33711 * 306.16785 * 14 13 12 16 16 C 1.46902 * 110.99497 * 187.25382 * 15 14 13 17 17 C 1.50699 * 109.47117 * 65.70000 * 16 15 14 18 18 H 1.08000 * 119.99735 * 0.02562 * 17 16 15 19 19 C 1.37880 * 120.00035 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99471 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99932 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47348 * 60.00282 * 21 19 17 23 23 H 1.48503 * 109.47101 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47045 * 299.99950 * 21 19 17 25 25 C 1.46905 * 111.26950 * 63.11028 * 15 14 13 26 26 C 1.47077 * 120.88322 * 359.97189 * 12 10 7 27 27 H 1.08998 * 109.46739 * 300.00266 * 1 2 3 28 28 H 1.08999 * 109.46658 * 59.99792 * 1 2 3 29 29 H 1.08991 * 109.46934 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47181 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47399 * 299.99754 * 3 2 1 32 32 H 1.09006 * 109.46778 * 60.00153 * 3 2 1 33 33 H 1.09001 * 109.47280 * 299.99967 * 4 2 1 34 34 H 1.08995 * 109.47248 * 60.00077 * 4 2 1 35 35 H 1.09006 * 109.47285 * 180.02562 * 4 2 1 36 36 H 1.09000 * 109.46734 * 60.00055 * 6 5 2 37 37 H 1.09004 * 109.47226 * 300.00605 * 6 5 2 38 38 H 1.00898 * 110.99761 * 176.04551 * 9 7 6 39 39 H 1.00904 * 110.99852 * 299.99193 * 9 7 6 40 40 H 1.08995 * 109.62590 * 350.86768 * 13 12 10 41 41 H 1.09001 * 109.62973 * 111.45087 * 13 12 10 42 42 H 1.08998 * 109.49282 * 66.12711 * 14 13 12 43 43 H 1.09001 * 109.48895 * 186.20865 * 14 13 12 44 44 H 1.09008 * 109.46656 * 185.70064 * 16 15 14 45 45 H 1.09002 * 109.47174 * 305.69787 * 16 15 14 46 46 H 0.97003 * 119.99505 * 179.97438 * 20 19 17 47 47 H 1.08999 * 109.49314 * 176.93241 * 25 15 14 48 48 H 1.09000 * 109.49217 * 56.84795 * 25 15 14 49 49 H 1.08997 * 109.63136 * 248.55193 * 26 12 10 50 50 H 1.09010 * 109.62363 * 9.13571 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0064 -0.6737 1.1668 6 6 1.5847 -2.0356 1.2646 7 6 2.1495 -2.6538 2.5451 8 1 1.8576 -2.0458 3.4014 9 7 3.6150 -2.7059 2.4584 10 6 1.6060 -4.0494 2.7112 11 8 2.2835 -5.0053 2.3977 12 7 0.3670 -4.2355 3.2079 13 6 -0.1824 -5.5891 3.3787 14 6 -1.5630 -5.6413 2.7155 15 7 -2.4004 -4.5590 3.2497 16 6 -3.7835 -4.6775 2.7689 17 6 -4.4044 -5.9311 3.3291 18 1 -3.8293 -6.5751 3.9778 19 6 -5.7071 -6.2553 3.0144 20 7 -6.4075 -5.4706 2.2248 21 14 -6.4770 -7.8088 3.7094 22 1 -6.4723 -7.7427 5.1929 23 1 -7.8751 -7.9286 3.2233 24 1 -5.6956 -8.9904 3.2641 25 6 -1.8404 -3.2409 2.9225 26 6 -0.4711 -3.0904 3.5946 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6768 1.9563 0.8901 33 1 1.6767 -1.7489 -1.2492 34 1 1.6768 -0.2075 -2.1392 35 1 3.1301 -0.7217 -1.2490 36 1 1.9491 -2.5916 0.4008 37 1 0.4957 -2.0778 1.2908 38 1 4.0159 -3.0507 3.3178 39 1 3.9111 -3.2642 1.6718 40 1 0.4788 -6.3150 2.9055 41 1 -0.2777 -5.8143 4.4409 42 1 -1.4537 -5.5187 1.6380 43 1 -2.0319 -6.6023 2.9270 44 1 -4.3573 -3.8103 3.0959 45 1 -3.7867 -4.7257 1.6799 46 1 -7.3238 -5.6989 2.0031 47 1 -2.5106 -2.4611 3.2840 48 1 -1.7273 -3.1518 1.8420 49 1 -0.5941 -3.0758 4.6775 50 1 -0.0007 -2.1643 3.2641 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000386196887.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:45 Heat of formation + Delta-G solvation = -98.974586 kcal Electronic energy + Delta-G solvation = -27900.737695 eV Core-core repulsion = 24154.965997 eV Total energy + Delta-G solvation = -3745.771697 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.62466 -39.94478 -39.13829 -36.13242 -35.96555 -34.40896 -33.79541 -32.26321 -30.28628 -29.28118 -28.31640 -28.10215 -27.27769 -25.19205 -24.19571 -23.55706 -21.88376 -20.94231 -19.86200 -18.67812 -18.51266 -17.64913 -17.39806 -16.92864 -16.80133 -16.58668 -16.04697 -15.88676 -15.55367 -15.47615 -15.36359 -15.08286 -14.87755 -14.38153 -14.19173 -14.11138 -13.99135 -13.55336 -13.16235 -13.10078 -12.88815 -12.83855 -12.79283 -12.62517 -12.58857 -12.45837 -12.37846 -12.30051 -12.22560 -12.12661 -11.77359 -11.50076 -11.37957 -11.22623 -10.62560 -10.48877 -9.87334 -9.84076 -9.09845 -8.22143 -6.31902 1.27953 1.41605 1.43684 1.51521 1.81251 2.39202 2.64705 3.09940 3.18522 3.35923 3.49566 3.79449 3.87624 3.90230 3.96733 4.00582 4.05928 4.13149 4.17025 4.18291 4.32286 4.37285 4.53376 4.54526 4.62424 4.66856 4.72009 4.80159 4.83154 4.89068 4.91114 4.97054 4.97456 4.97919 5.13568 5.16377 5.19773 5.35290 5.36144 5.40062 5.61986 5.88830 6.01173 6.15868 6.30087 6.31809 6.35448 6.55177 6.83155 6.91247 7.37898 8.88682 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.016856 B = 0.003271 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.688072 B = 8558.021939 C = 9721.885195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.099 3.901 3 C -0.132 4.132 4 C -0.177 4.177 5 O -0.366 6.366 6 C 0.078 3.922 7 C 0.087 3.913 8 H 0.127 0.873 9 N -0.806 5.806 10 C 0.484 3.516 11 O -0.579 6.579 12 N -0.603 5.603 13 C 0.123 3.877 14 C 0.058 3.942 15 N -0.537 5.537 16 C 0.210 3.790 17 C -0.525 4.525 18 H 0.065 0.935 19 C 0.004 3.996 20 N -0.933 5.933 21 Si 0.966 3.034 22 H -0.267 1.267 23 H -0.285 1.285 24 H -0.269 1.269 25 C 0.038 3.962 26 C 0.115 3.885 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.047 0.953 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.047 0.953 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.048 0.952 37 H 0.061 0.939 38 H 0.350 0.650 39 H 0.346 0.654 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.010 0.990 43 H 0.080 0.920 44 H 0.012 0.988 45 H -0.041 1.041 46 H 0.264 0.736 47 H 0.091 0.909 48 H 0.021 0.979 49 H 0.093 0.907 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.365 12.122 -2.162 21.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.060 3.940 3 C -0.189 4.189 4 C -0.234 4.234 5 O -0.286 6.286 6 C 0.000 4.000 7 C -0.029 4.029 8 H 0.145 0.855 9 N -0.335 5.335 10 C 0.271 3.729 11 O -0.459 6.459 12 N -0.335 5.335 13 C 0.000 4.000 14 C -0.071 4.071 15 N -0.262 5.262 16 C 0.083 3.917 17 C -0.563 4.563 18 H 0.083 0.917 19 C -0.194 4.194 20 N -0.574 5.574 21 Si 0.791 3.209 22 H -0.192 1.192 23 H -0.210 1.210 24 H -0.194 1.194 25 C -0.091 4.091 26 C -0.007 4.007 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.104 0.896 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.164 0.836 39 H 0.159 0.841 40 H 0.104 0.896 41 H 0.101 0.899 42 H 0.028 0.972 43 H 0.098 0.902 44 H 0.030 0.970 45 H -0.023 1.023 46 H 0.073 0.927 47 H 0.109 0.891 48 H 0.039 0.961 49 H 0.111 0.889 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 17.635 12.507 -1.862 21.700 hybrid contribution -1.335 -2.111 -0.914 2.659 sum 16.300 10.396 -2.776 19.532 Atomic orbital electron populations 1.22463 0.95458 1.02145 1.03750 1.21718 0.93309 0.93920 0.85045 1.21739 1.01802 0.92164 1.03244 1.22421 1.02123 1.00517 0.98384 1.88007 1.74566 1.22346 1.43681 1.22213 0.97927 0.84293 0.95542 1.21500 0.90262 0.90222 1.00915 0.85538 1.59099 1.04020 1.60368 1.09971 1.22314 0.81060 0.93418 0.76144 1.90667 1.58810 1.44224 1.52230 1.48427 1.14781 1.08268 1.62033 1.21672 0.92777 0.84005 1.01537 1.22251 0.92942 0.96825 0.95123 1.62008 1.02788 1.01877 1.59547 1.19365 0.84325 0.96631 0.91329 1.21432 0.97719 1.07904 1.29285 0.91694 1.25869 0.97737 1.00392 0.95438 1.70068 1.10419 1.39541 1.37326 0.85479 0.77160 0.79268 0.78991 1.19195 1.21020 1.19426 1.22528 0.96475 0.92590 0.97504 1.22105 0.88913 0.88418 1.01249 0.91330 0.90231 0.93401 0.91981 0.89559 0.91798 0.93412 0.90144 0.91753 0.93411 0.92144 0.83612 0.84056 0.89600 0.89928 0.97215 0.90200 0.97009 1.02313 0.92685 0.89106 0.96114 0.88930 0.86870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.04 8.25 71.98 0.59 -2.45 16 2 C 0.10 1.71 1.14 -10.79 -0.01 1.69 16 3 C -0.13 -1.83 8.84 71.98 0.64 -1.19 16 4 C -0.18 -2.90 8.25 71.98 0.59 -2.30 16 5 O -0.37 -7.70 9.93 -148.98 -1.48 -9.18 16 6 C 0.08 1.66 4.38 71.98 0.32 1.97 16 7 C 0.09 1.83 2.57 44.17 0.11 1.94 16 8 H 0.13 2.30 6.87 -2.39 -0.02 2.28 16 9 N -0.81 -16.30 8.93 -171.81 -1.53 -17.84 16 10 C 0.48 12.98 6.95 87.66 0.61 13.59 16 11 O -0.58 -19.10 15.70 -3.05 -0.05 -19.15 16 12 N -0.60 -16.42 3.01 -817.84 -2.46 -18.88 16 13 C 0.12 3.82 6.60 86.35 0.57 4.39 16 14 C 0.06 2.18 5.46 86.39 0.47 2.65 16 15 N -0.54 -21.69 4.62 -899.68 -4.16 -25.85 16 16 C 0.21 10.71 4.72 85.56 0.40 11.12 16 17 C -0.53 -28.78 8.41 25.60 0.22 -28.57 16 18 H 0.06 3.47 7.13 -2.91 -0.02 3.44 16 19 C 0.00 0.22 5.46 84.66 0.46 0.68 16 20 N -0.93 -55.00 13.29 21.45 0.28 -54.71 16 21 Si 0.97 43.35 29.54 68.60 2.03 45.38 16 22 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 23 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 24 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 25 C 0.04 1.19 5.62 86.40 0.49 1.68 16 26 C 0.12 2.73 5.96 86.36 0.52 3.24 16 27 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.05 0.92 6.54 -2.39 -0.02 0.90 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.05 0.88 6.54 -2.39 -0.02 0.86 16 34 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 36 H 0.05 1.10 6.42 -2.39 -0.02 1.08 16 37 H 0.06 1.30 5.20 -2.38 -0.01 1.29 16 38 H 0.35 6.37 9.06 -89.70 -0.81 5.56 16 39 H 0.35 7.39 8.58 -89.69 -0.77 6.62 16 40 H 0.09 2.72 7.06 -2.39 -0.02 2.70 16 41 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 43 H 0.08 3.28 6.67 -2.39 -0.02 3.27 16 44 H 0.01 0.64 7.97 -2.38 -0.02 0.63 16 45 H -0.04 -2.31 8.12 -2.39 -0.02 -2.33 16 46 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 47 H 0.09 2.73 7.99 -2.39 -0.02 2.71 16 48 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 49 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 50 H 0.11 2.04 4.85 -2.38 -0.01 2.03 16 Total: -1.00 -66.04 385.83 -2.04 -68.08 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: -0.64 Total: 23.69 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: 5.97 Total: 8.46 kcal Atomic # 7 Polarization: -109.42 SS G_CDS: -7.87 Total: -117.28 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -1.53 Total: -28.33 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -66.04 -2.04 -68.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386196887.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.894 kcal (2) G-P(sol) polarization free energy of solvation -66.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds