Wall clock time and date at job start Tue Mar 31 2020 11:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.50997 * 2 1 4 4 C 1.53098 * 109.50201 * 239.90995 * 2 1 3 5 5 N 1.47017 * 109.25621 * 183.17382 * 4 2 1 6 6 C 1.46902 * 110.99914 * 182.39519 * 5 4 2 7 7 C 1.53002 * 109.47023 * 58.62579 * 6 5 4 8 8 C 1.52996 * 109.47001 * 298.62482 * 6 5 4 9 9 C 1.52999 * 109.47141 * 178.62241 * 6 5 4 10 10 N 1.46498 * 109.47223 * 305.41052 * 9 6 5 11 11 C 1.34771 * 120.00393 * 185.03081 * 10 9 6 12 12 O 1.21593 * 119.99714 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00692 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00453 * 179.72312 * 13 11 10 15 15 C 1.50696 * 109.46989 * 180.27168 * 14 13 11 16 16 H 1.08000 * 120.00295 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99848 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99766 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00147 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47326 * 59.99927 * 19 17 15 21 21 H 1.48502 * 109.47216 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46900 * 299.99889 * 19 17 15 23 23 C 1.47014 * 110.75227 * 58.62187 * 5 4 2 24 24 C 1.53096 * 109.25325 * 301.38170 * 23 5 4 25 25 H 1.09009 * 109.50480 * 176.78401 * 24 23 5 26 26 C 1.53001 * 109.54685 * 296.89045 * 24 23 5 27 27 O 1.43016 * 109.53952 * 120.11149 * 2 1 3 28 28 H 1.08996 * 109.47397 * 180.08836 * 1 2 3 29 29 H 1.08998 * 109.46560 * 300.08806 * 1 2 3 30 30 H 1.09000 * 109.47178 * 60.08293 * 1 2 3 31 31 H 1.09007 * 109.50754 * 63.24369 * 4 2 1 32 32 H 1.08997 * 109.55005 * 303.13189 * 4 2 1 33 33 H 1.09005 * 109.46958 * 180.02562 * 7 6 5 34 34 H 1.09003 * 109.47016 * 299.99383 * 7 6 5 35 35 H 1.08995 * 109.47502 * 59.99552 * 7 6 5 36 36 H 1.09005 * 109.47146 * 299.99602 * 8 6 5 37 37 H 1.08996 * 109.47475 * 60.00527 * 8 6 5 38 38 H 1.09010 * 109.46829 * 180.02562 * 8 6 5 39 39 H 1.08996 * 109.46992 * 185.41030 * 9 6 5 40 40 H 1.09004 * 109.47054 * 65.40584 * 9 6 5 41 41 H 0.97000 * 120.00163 * 5.03168 * 10 9 6 42 42 H 0.97007 * 119.99751 * 359.97438 * 13 11 10 43 43 H 1.08992 * 109.47085 * 300.27483 * 14 13 11 44 44 H 1.09002 * 109.46688 * 60.27677 * 14 13 11 45 45 H 0.97004 * 119.99772 * 180.02562 * 18 17 15 46 46 H 1.08998 * 109.50559 * 61.31520 * 23 5 4 47 47 H 1.08998 * 109.50577 * 181.44999 * 23 5 4 48 48 H 1.08997 * 109.47393 * 179.80686 * 26 24 23 49 49 H 1.09001 * 109.47268 * 299.81221 * 26 24 23 50 50 H 1.09007 * 109.46805 * 59.80634 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0412 -0.7235 -1.2487 5 7 3.5093 -0.7872 -1.2053 6 6 4.0446 -1.4252 -2.4155 7 6 3.5960 -0.6376 -3.6481 8 6 3.5220 -2.8601 -2.5091 9 6 5.5730 -1.4422 -2.3496 10 7 6.0676 -0.0808 -2.1302 11 6 7.3928 0.1644 -2.1390 12 8 8.1779 -0.7443 -2.3293 13 7 7.8478 1.4168 -1.9367 14 6 9.2886 1.6822 -1.9401 15 6 9.5299 3.1479 -1.6865 16 1 8.6938 3.8150 -1.5372 17 6 10.8183 3.6372 -1.6440 18 7 11.8365 2.8248 -1.8253 19 14 11.1175 5.4540 -1.3289 20 1 10.5481 5.8279 -0.0094 21 1 12.5780 5.7230 -1.3325 22 1 10.4644 6.2554 -2.3949 23 6 3.9649 -1.4871 0.0046 24 6 3.4344 -0.7559 1.2407 25 1 3.7217 -1.3033 2.1386 26 6 4.0230 0.6553 1.2925 27 8 2.0084 -0.6762 1.1659 28 1 -0.3634 -1.0276 0.0016 29 1 -0.3632 0.5152 0.8892 30 1 -0.3633 0.5125 -0.8907 31 1 1.7267 -0.1791 -2.1392 32 1 1.6337 -1.7341 -1.2771 33 1 3.9928 -1.1112 -4.5461 34 1 2.5071 -0.6255 -3.6951 35 1 3.9682 0.3847 -3.5814 36 1 3.8416 -3.4212 -1.6310 37 1 2.4332 -2.8480 -2.5562 38 1 3.9196 -3.3337 -3.4069 39 1 5.9728 -1.8273 -3.2876 40 1 5.8941 -2.0822 -1.5277 41 1 5.4413 0.6442 -1.9787 42 1 7.2215 2.1418 -1.7851 43 1 9.7682 1.0943 -1.1577 44 1 9.7063 1.4075 -2.9087 45 1 12.7429 3.1690 -1.7950 46 1 3.5881 -2.5099 -0.0029 47 1 5.0545 -1.5001 0.0291 48 1 3.6420 1.1760 2.1710 49 1 5.1098 0.5939 1.3495 50 1 3.7367 1.2016 0.3937 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426430388.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:10 Heat of formation + Delta-G solvation = -74.657199 kcal Electronic energy + Delta-G solvation = -28086.926979 eV Core-core repulsion = 24342.209763 eV Total energy + Delta-G solvation = -3744.717216 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.77448 -39.07532 -37.68789 -34.23649 -33.75898 -33.56161 -32.37011 -31.88539 -29.80834 -28.24328 -27.54476 -26.65172 -25.57588 -24.66136 -22.75147 -22.34002 -20.10176 -19.95351 -19.07637 -17.90603 -16.89237 -16.72494 -15.97128 -15.57265 -15.45932 -15.17232 -15.07466 -14.67901 -14.58971 -14.32085 -13.99235 -13.59770 -13.27706 -12.98929 -12.93240 -12.78649 -12.70796 -12.48438 -12.23750 -12.11696 -11.92246 -11.90407 -11.77102 -11.72172 -11.48115 -11.39867 -11.11268 -10.93910 -10.83917 -10.69601 -10.40599 -10.25879 -9.73239 -9.33680 -9.31831 -8.69399 -8.57962 -8.50380 -7.66030 -6.11132 -4.17347 3.28504 3.30987 3.33613 3.36176 3.53978 3.65494 4.06983 4.36538 4.41561 4.54286 4.61567 4.77054 4.83628 4.85099 4.88576 4.97628 5.16099 5.17371 5.24785 5.24909 5.27900 5.30250 5.36672 5.42776 5.51962 5.55511 5.60638 5.65506 5.69484 5.77206 5.78857 5.81349 5.89625 5.91046 5.99954 6.09499 6.23967 6.75451 6.76447 7.04608 7.05444 7.23258 7.59412 7.63376 7.63754 7.99586 8.13687 8.82664 9.05132 9.41398 9.56403 10.99129 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.016574 B = 0.003194 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.957722 B = 8764.824206 C = 9639.350974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.086 3.914 3 H 0.070 0.930 4 C 0.019 3.981 5 N -0.519 5.519 6 C 0.094 3.906 7 C -0.139 4.139 8 C -0.178 4.178 9 C 0.157 3.843 10 N -0.745 5.745 11 C 0.691 3.309 12 O -0.607 6.607 13 N -0.730 5.730 14 C 0.269 3.731 15 C -0.541 4.541 16 H 0.061 0.939 17 C 0.063 3.937 18 N -0.886 5.886 19 Si 0.903 3.097 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.276 1.276 23 C 0.018 3.982 24 C 0.092 3.908 25 H 0.102 0.898 26 C -0.175 4.175 27 O -0.380 6.380 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.045 0.955 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.057 0.943 41 H 0.398 0.602 42 H 0.385 0.615 43 H 0.023 0.977 44 H 0.023 0.977 45 H 0.266 0.734 46 H 0.044 0.956 47 H 0.094 0.906 48 H 0.055 0.945 49 H 0.068 0.932 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.501 -7.733 1.752 25.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.028 3.972 3 H 0.088 0.912 4 C -0.109 4.109 5 N -0.243 5.243 6 C 0.005 3.995 7 C -0.197 4.197 8 C -0.238 4.238 9 C 0.031 3.969 10 N -0.403 5.403 11 C 0.391 3.609 12 O -0.487 6.487 13 N -0.382 5.382 14 C 0.147 3.853 15 C -0.579 4.579 16 H 0.080 0.920 17 C -0.140 4.140 18 N -0.524 5.524 19 Si 0.731 3.269 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.201 1.201 23 C -0.110 4.110 24 C 0.035 3.965 25 H 0.120 0.880 26 C -0.232 4.232 27 O -0.299 6.299 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.232 0.768 42 H 0.217 0.783 43 H 0.041 0.959 44 H 0.041 0.959 45 H 0.075 0.925 46 H 0.062 0.938 47 H 0.112 0.888 48 H 0.074 0.926 49 H 0.087 0.913 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -23.438 -8.156 1.719 24.876 hybrid contribution -0.374 0.816 0.078 0.901 sum -23.812 -7.340 1.797 24.983 Atomic orbital electron populations 1.21742 0.93148 1.02719 1.02563 1.22139 0.94398 0.96205 0.84465 0.91221 1.22908 0.88234 1.00305 0.99405 1.62370 1.08414 1.52120 1.01439 1.21372 0.94541 0.92872 0.90735 1.21896 1.00872 1.01063 0.95872 1.22404 1.01514 0.96876 1.02965 1.21049 0.90047 0.84364 1.01438 1.44968 1.05758 1.10058 1.79545 1.16181 0.81848 0.84249 0.78625 1.90864 1.55352 1.44399 1.58043 1.45681 1.10982 1.06373 1.75179 1.18927 0.73244 0.95653 0.97429 1.21204 0.92632 0.93069 1.51013 0.92042 1.24941 0.95793 0.98360 0.94929 1.69974 0.98885 1.35088 1.48438 0.86486 0.77191 0.84450 0.78820 1.20106 1.21126 1.20117 1.22894 1.02011 0.95975 0.90132 1.22246 0.80351 0.96725 0.97222 0.87992 1.22274 1.01835 0.96582 1.02547 1.88023 1.21053 1.78083 1.42771 0.92092 0.91656 0.91066 0.89443 0.93720 0.91749 0.92482 0.91349 0.92054 0.91985 0.91429 0.91366 0.92478 0.76763 0.78265 0.95902 0.95901 0.92466 0.93757 0.88803 0.92570 0.91272 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.57 37.16 0.36 -0.63 16 2 C 0.09 0.74 3.03 -26.68 -0.08 0.66 16 3 H 0.07 0.63 6.49 -51.93 -0.34 0.29 16 4 C 0.02 0.16 4.16 -3.71 -0.02 0.14 16 5 N -0.52 -4.76 3.27 -218.66 -0.71 -5.48 16 6 C 0.09 0.88 0.37 -131.60 -0.05 0.84 16 7 C -0.14 -1.20 8.08 37.16 0.30 -0.90 16 8 C -0.18 -1.47 7.78 37.16 0.29 -1.18 16 9 C 0.16 2.02 3.96 -4.04 -0.02 2.00 16 10 N -0.75 -11.12 5.08 -65.23 -0.33 -11.45 16 11 C 0.69 14.37 8.57 -86.92 -0.74 13.63 16 12 O -0.61 -15.35 16.34 5.28 0.09 -15.26 16 13 N -0.73 -15.84 5.55 -66.42 -0.37 -16.21 16 14 C 0.27 7.30 5.43 -5.20 -0.03 7.27 16 15 C -0.54 -14.87 9.28 -34.44 -0.32 -15.19 16 16 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 17 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 18 N -0.89 -26.44 13.29 55.43 0.74 -25.71 16 19 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 C 0.02 0.18 4.29 -3.71 -0.02 0.16 16 24 C 0.09 0.92 3.92 -26.68 -0.10 0.82 16 25 H 0.10 0.94 8.14 -51.92 -0.42 0.52 16 26 C -0.17 -1.80 8.89 37.16 0.33 -1.47 16 27 O -0.38 -4.05 10.29 -35.23 -0.36 -4.41 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.63 6.15 -51.93 -0.32 0.31 16 32 H 0.04 0.38 6.47 -51.93 -0.34 0.04 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.41 6.33 -51.93 -0.33 0.08 16 35 H 0.07 0.65 7.32 -51.93 -0.38 0.27 16 36 H 0.06 0.53 6.51 -51.93 -0.34 0.19 16 37 H 0.06 0.47 6.49 -51.93 -0.34 0.13 16 38 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.06 0.79 6.63 -51.93 -0.34 0.44 16 41 H 0.40 5.18 7.44 -40.82 -0.30 4.88 16 42 H 0.39 7.24 8.34 -40.82 -0.34 6.90 16 43 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 46 H 0.04 0.44 6.49 -51.93 -0.34 0.10 16 47 H 0.09 1.08 6.26 -51.93 -0.33 0.75 16 48 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.07 0.75 6.13 -51.93 -0.32 0.44 16 LS Contribution 379.93 15.07 5.73 5.73 Total: -1.00 -32.53 379.93 -8.97 -41.51 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -8.53 Total: 7.42 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: -0.20 Total: 7.83 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: -0.68 Total: -58.85 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.28 Total: -19.67 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.53 -8.97 -41.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426430388.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.149 kcal (2) G-P(sol) polarization free energy of solvation -32.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds