Wall clock time and date at job start Tue Mar 31 2020 11:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.50997 * 2 1 4 4 C 1.53098 * 109.50201 * 239.90995 * 2 1 3 5 5 N 1.47017 * 109.25621 * 183.17382 * 4 2 1 6 6 C 1.46902 * 110.99914 * 182.39519 * 5 4 2 7 7 C 1.53002 * 109.47023 * 58.62579 * 6 5 4 8 8 C 1.52996 * 109.47001 * 298.62482 * 6 5 4 9 9 C 1.52999 * 109.47141 * 178.62241 * 6 5 4 10 10 N 1.46498 * 109.47223 * 305.41052 * 9 6 5 11 11 C 1.34771 * 120.00393 * 185.03081 * 10 9 6 12 12 O 1.21593 * 119.99714 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00692 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00453 * 179.72312 * 13 11 10 15 15 C 1.50696 * 109.46989 * 180.27168 * 14 13 11 16 16 H 1.08000 * 120.00295 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99848 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99766 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00147 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47326 * 59.99927 * 19 17 15 21 21 H 1.48502 * 109.47216 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46900 * 299.99889 * 19 17 15 23 23 C 1.47014 * 110.75227 * 58.62187 * 5 4 2 24 24 C 1.53096 * 109.25325 * 301.38170 * 23 5 4 25 25 H 1.09009 * 109.50480 * 176.78401 * 24 23 5 26 26 C 1.53001 * 109.54685 * 296.89045 * 24 23 5 27 27 O 1.43016 * 109.53952 * 120.11149 * 2 1 3 28 28 H 1.08996 * 109.47397 * 180.08836 * 1 2 3 29 29 H 1.08998 * 109.46560 * 300.08806 * 1 2 3 30 30 H 1.09000 * 109.47178 * 60.08293 * 1 2 3 31 31 H 1.09007 * 109.50754 * 63.24369 * 4 2 1 32 32 H 1.08997 * 109.55005 * 303.13189 * 4 2 1 33 33 H 1.09005 * 109.46958 * 180.02562 * 7 6 5 34 34 H 1.09003 * 109.47016 * 299.99383 * 7 6 5 35 35 H 1.08995 * 109.47502 * 59.99552 * 7 6 5 36 36 H 1.09005 * 109.47146 * 299.99602 * 8 6 5 37 37 H 1.08996 * 109.47475 * 60.00527 * 8 6 5 38 38 H 1.09010 * 109.46829 * 180.02562 * 8 6 5 39 39 H 1.08996 * 109.46992 * 185.41030 * 9 6 5 40 40 H 1.09004 * 109.47054 * 65.40584 * 9 6 5 41 41 H 0.97000 * 120.00163 * 5.03168 * 10 9 6 42 42 H 0.97007 * 119.99751 * 359.97438 * 13 11 10 43 43 H 1.08992 * 109.47085 * 300.27483 * 14 13 11 44 44 H 1.09002 * 109.46688 * 60.27677 * 14 13 11 45 45 H 0.97004 * 119.99772 * 180.02562 * 18 17 15 46 46 H 1.08998 * 109.50559 * 61.31520 * 23 5 4 47 47 H 1.08998 * 109.50577 * 181.44999 * 23 5 4 48 48 H 1.08997 * 109.47393 * 179.80686 * 26 24 23 49 49 H 1.09001 * 109.47268 * 299.81221 * 26 24 23 50 50 H 1.09007 * 109.46805 * 59.80634 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0412 -0.7235 -1.2487 5 7 3.5093 -0.7872 -1.2053 6 6 4.0446 -1.4252 -2.4155 7 6 3.5960 -0.6376 -3.6481 8 6 3.5220 -2.8601 -2.5091 9 6 5.5730 -1.4422 -2.3496 10 7 6.0676 -0.0808 -2.1302 11 6 7.3928 0.1644 -2.1390 12 8 8.1779 -0.7443 -2.3293 13 7 7.8478 1.4168 -1.9367 14 6 9.2886 1.6822 -1.9401 15 6 9.5299 3.1479 -1.6865 16 1 8.6938 3.8150 -1.5372 17 6 10.8183 3.6372 -1.6440 18 7 11.8365 2.8248 -1.8253 19 14 11.1175 5.4540 -1.3289 20 1 10.5481 5.8279 -0.0094 21 1 12.5780 5.7230 -1.3325 22 1 10.4644 6.2554 -2.3949 23 6 3.9649 -1.4871 0.0046 24 6 3.4344 -0.7559 1.2407 25 1 3.7217 -1.3033 2.1386 26 6 4.0230 0.6553 1.2925 27 8 2.0084 -0.6762 1.1659 28 1 -0.3634 -1.0276 0.0016 29 1 -0.3632 0.5152 0.8892 30 1 -0.3633 0.5125 -0.8907 31 1 1.7267 -0.1791 -2.1392 32 1 1.6337 -1.7341 -1.2771 33 1 3.9928 -1.1112 -4.5461 34 1 2.5071 -0.6255 -3.6951 35 1 3.9682 0.3847 -3.5814 36 1 3.8416 -3.4212 -1.6310 37 1 2.4332 -2.8480 -2.5562 38 1 3.9196 -3.3337 -3.4069 39 1 5.9728 -1.8273 -3.2876 40 1 5.8941 -2.0822 -1.5277 41 1 5.4413 0.6442 -1.9787 42 1 7.2215 2.1418 -1.7851 43 1 9.7682 1.0943 -1.1577 44 1 9.7063 1.4075 -2.9087 45 1 12.7429 3.1690 -1.7950 46 1 3.5881 -2.5099 -0.0029 47 1 5.0545 -1.5001 0.0291 48 1 3.6420 1.1760 2.1710 49 1 5.1098 0.5939 1.3495 50 1 3.7367 1.2016 0.3937 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426430388.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:09 Heat of formation + Delta-G solvation = -98.944962 kcal Electronic energy + Delta-G solvation = -28087.980176 eV Core-core repulsion = 24342.209763 eV Total energy + Delta-G solvation = -3745.770413 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.63782 -40.61636 -38.65776 -36.12853 -35.13772 -34.34281 -34.25145 -32.94573 -30.57274 -29.48884 -28.83836 -27.60765 -26.67769 -25.54520 -24.37668 -23.43194 -21.74894 -20.87064 -19.99020 -19.51463 -18.07872 -17.70291 -17.50617 -17.04205 -16.48545 -16.39737 -16.17692 -15.92255 -15.70420 -15.33566 -15.17346 -14.94194 -14.58933 -14.21510 -13.99137 -13.89225 -13.83599 -13.42104 -13.37784 -13.17120 -12.90070 -12.89467 -12.82380 -12.70039 -12.66075 -12.46263 -12.35376 -12.21353 -12.14825 -11.84934 -11.55402 -11.47013 -11.18774 -11.14547 -10.76973 -10.49102 -10.18436 -9.49964 -9.27721 -8.26161 -6.42436 1.44399 1.48942 1.56842 1.96242 2.32305 2.41535 2.69316 2.86452 3.08671 3.55923 3.64787 3.81637 3.87086 3.98268 4.07010 4.14596 4.17751 4.27407 4.44462 4.47782 4.52776 4.58141 4.69041 4.73424 4.75394 4.77631 4.80333 4.88577 4.93261 4.97285 5.01420 5.08811 5.11821 5.18722 5.22955 5.30378 5.30555 5.37769 5.41309 5.52079 5.61184 5.72858 5.88660 5.99292 6.05710 6.32109 6.36043 6.69595 7.27163 7.39459 7.80435 8.86038 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.016574 B = 0.003194 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.957722 B = 8764.824206 C = 9639.350974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.080 3.920 3 H 0.066 0.934 4 C 0.023 3.977 5 N -0.522 5.522 6 C 0.105 3.895 7 C -0.138 4.138 8 C -0.174 4.174 9 C 0.154 3.846 10 N -0.716 5.716 11 C 0.690 3.310 12 O -0.654 6.654 13 N -0.724 5.724 14 C 0.288 3.712 15 C -0.554 4.554 16 H 0.083 0.917 17 C 0.004 3.996 18 N -0.931 5.931 19 Si 0.985 3.015 20 H -0.262 1.262 21 H -0.286 1.286 22 H -0.262 1.262 23 C 0.023 3.977 24 C 0.093 3.907 25 H 0.106 0.894 26 C -0.168 4.168 27 O -0.393 6.393 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.047 0.953 41 H 0.411 0.589 42 H 0.403 0.597 43 H -0.017 1.017 44 H -0.016 1.016 45 H 0.268 0.732 46 H 0.047 0.953 47 H 0.075 0.925 48 H 0.057 0.943 49 H 0.055 0.945 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.230 -6.246 1.589 27.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.023 3.977 3 H 0.084 0.916 4 C -0.104 4.104 5 N -0.247 5.247 6 C 0.015 3.985 7 C -0.195 4.195 8 C -0.233 4.233 9 C 0.029 3.971 10 N -0.373 5.373 11 C 0.390 3.610 12 O -0.537 6.537 13 N -0.377 5.377 14 C 0.165 3.835 15 C -0.592 4.592 16 H 0.101 0.899 17 C -0.196 4.196 18 N -0.570 5.570 19 Si 0.808 3.192 20 H -0.187 1.187 21 H -0.211 1.211 22 H -0.186 1.186 23 C -0.105 4.105 24 C 0.035 3.965 25 H 0.124 0.876 26 C -0.226 4.226 27 O -0.313 6.313 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.109 0.891 31 H 0.122 0.878 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.249 0.751 42 H 0.238 0.762 43 H 0.001 0.999 44 H 0.002 0.998 45 H 0.077 0.923 46 H 0.065 0.935 47 H 0.093 0.907 48 H 0.076 0.924 49 H 0.074 0.926 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -26.270 -6.662 1.559 27.146 hybrid contribution 0.421 0.266 0.131 0.515 sum -25.849 -6.396 1.690 26.682 Atomic orbital electron populations 1.21743 0.91632 1.02959 1.03412 1.22313 0.95575 0.95811 0.84006 0.91648 1.22945 0.86954 1.00650 0.99857 1.62354 1.09539 1.51920 1.00922 1.21255 0.91625 0.94216 0.91401 1.21893 1.02282 1.00209 0.95123 1.22365 1.02367 0.95632 1.02956 1.21228 0.92811 0.82568 1.00467 1.44714 1.03564 1.11587 1.77485 1.16339 0.83300 0.83222 0.78165 1.90832 1.57186 1.45690 1.60023 1.45269 1.09275 1.07531 1.75642 1.18349 0.75770 0.95554 0.93833 1.21574 0.93639 0.93116 1.50888 0.89916 1.26059 0.95368 1.03943 0.94183 1.70143 0.99542 1.37839 1.49476 0.85206 0.77031 0.77526 0.79428 1.18685 1.21116 1.18631 1.22774 1.00792 0.96282 0.90660 1.22230 0.80410 0.96456 0.97387 0.87648 1.22200 1.00875 0.96931 1.02578 1.88017 1.20980 1.78386 1.43899 0.92117 0.91972 0.89104 0.87783 0.93450 0.91695 0.90301 0.92176 0.92641 0.90450 0.90994 0.92392 0.93455 0.75140 0.76239 0.99895 0.99840 0.92276 0.93509 0.90704 0.92363 0.92607 0.91114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.57 71.98 0.69 -0.85 16 2 C 0.08 1.21 3.03 30.63 0.09 1.30 16 3 H 0.07 1.05 6.49 -2.39 -0.02 1.03 16 4 C 0.02 0.31 4.16 86.31 0.36 0.67 16 5 N -0.52 -8.67 3.27 -845.71 -2.76 -11.44 16 6 C 0.10 1.78 0.37 3.53 0.00 1.79 16 7 C -0.14 -2.01 8.08 71.98 0.58 -1.43 16 8 C -0.17 -2.51 7.78 71.98 0.56 -1.95 16 9 C 0.15 3.94 3.96 86.38 0.34 4.29 16 10 N -0.72 -21.24 5.08 -478.54 -2.43 -23.67 16 11 C 0.69 29.38 8.57 179.06 1.53 30.91 16 12 O -0.65 -34.50 16.34 -4.01 -0.07 -34.57 16 13 N -0.72 -31.97 5.55 -482.31 -2.68 -34.65 16 14 C 0.29 16.30 5.43 85.63 0.46 16.77 16 15 C -0.55 -30.64 9.28 25.60 0.24 -30.40 16 16 H 0.08 4.12 7.60 -2.91 -0.02 4.10 16 17 C 0.00 0.22 5.46 84.66 0.46 0.69 16 18 N -0.93 -56.92 13.29 21.45 0.28 -56.64 16 19 Si 0.99 42.68 29.54 68.60 2.03 44.71 16 20 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 21 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 22 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 23 C 0.02 0.44 4.29 86.31 0.37 0.81 16 24 C 0.09 1.78 3.92 30.63 0.12 1.90 16 25 H 0.11 1.90 8.14 -2.38 -0.02 1.88 16 26 C -0.17 -3.35 8.89 71.98 0.64 -2.71 16 27 O -0.39 -7.79 10.29 -148.98 -1.53 -9.32 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.10 1.08 6.15 -2.38 -0.01 1.07 16 32 H 0.05 0.64 6.47 -2.39 -0.02 0.63 16 33 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 34 H 0.08 0.84 6.33 -2.39 -0.02 0.82 16 35 H 0.06 0.99 7.32 -2.39 -0.02 0.98 16 36 H 0.05 0.88 6.51 -2.38 -0.02 0.86 16 37 H 0.08 0.92 6.49 -2.39 -0.02 0.90 16 38 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 39 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.05 1.33 6.63 -2.38 -0.02 1.32 16 41 H 0.41 10.22 7.44 -92.71 -0.69 9.53 16 42 H 0.40 14.87 8.34 -92.70 -0.77 14.09 16 43 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 44 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 45 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 46 H 0.05 0.88 6.49 -2.39 -0.02 0.86 16 47 H 0.07 1.73 6.26 -2.39 -0.01 1.71 16 48 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 49 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 50 H 0.07 1.40 6.13 -2.38 -0.01 1.39 16 Total: -1.00 -72.76 379.93 -1.23 -73.98 By element: Atomic # 1 Polarization: 30.33 SS G_CDS: -0.52 Total: 29.81 kcal Atomic # 6 Polarization: 15.33 SS G_CDS: 6.45 Total: 21.78 kcal Atomic # 7 Polarization: -118.81 SS G_CDS: -7.59 Total: -126.40 kcal Atomic # 8 Polarization: -42.29 SS G_CDS: -1.60 Total: -43.89 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -72.76 -1.23 -73.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426430388.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.961 kcal (2) G-P(sol) polarization free energy of solvation -72.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds