Wall clock time and date at job start Tue Mar 31 2020 10:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50696 * 109.47145 * 2 1 4 4 C 1.38237 * 120.00079 * 119.72520 * 3 2 1 5 5 C 1.38235 * 119.99681 * 179.78671 * 4 3 2 6 6 C 1.38232 * 120.00106 * 0.46650 * 5 4 3 7 7 C 1.38230 * 120.00374 * 359.76341 * 6 5 4 8 8 C 1.38235 * 119.99741 * 299.99973 * 3 2 1 9 9 C 1.53002 * 109.47201 * 120.00083 * 2 1 3 10 10 C 1.52999 * 109.47378 * 59.99459 * 9 2 1 11 11 C 1.53013 * 109.46670 * 60.00254 * 10 9 2 12 12 N 1.46901 * 109.46777 * 60.00297 * 11 10 9 13 13 C 1.46899 * 110.99876 * 159.64883 * 12 11 10 14 14 C 1.53004 * 109.47145 * 185.02719 * 13 12 11 15 15 C 1.50706 * 115.54845 * 54.17671 * 14 13 12 16 16 H 1.08001 * 119.99621 * 215.59167 * 15 14 13 17 17 C 1.37872 * 119.99882 * 35.31077 * 15 14 13 18 18 N 1.31516 * 120.00130 * 355.76952 * 17 15 14 19 19 Si 1.86797 * 120.00032 * 175.77072 * 17 15 14 20 20 H 1.48496 * 109.47522 * 59.99773 * 19 17 15 21 21 H 1.48501 * 109.47496 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46927 * 300.00015 * 19 17 15 23 23 C 1.52998 * 117.50140 * 199.84569 * 14 13 12 24 24 C 1.52998 * 117.50200 * 268.50646 * 14 13 12 25 25 C 1.52992 * 109.46959 * 300.00000 * 11 10 9 26 26 C 1.53001 * 109.47353 * 239.99931 * 2 1 3 27 27 H 1.09002 * 109.47460 * 299.99996 * 1 2 3 28 28 H 1.09000 * 109.47096 * 60.00476 * 1 2 3 29 29 H 1.09001 * 109.47026 * 179.97438 * 1 2 3 30 30 H 1.07995 * 120.00049 * 0.02562 * 4 3 2 31 31 H 1.08001 * 119.99903 * 180.25505 * 5 4 3 32 32 H 1.08002 * 119.99873 * 179.79159 * 6 5 4 33 33 H 1.07999 * 120.00313 * 180.02562 * 7 6 5 34 34 H 1.07998 * 120.00197 * 359.97438 * 8 3 2 35 35 H 1.09002 * 109.46849 * 300.00295 * 9 2 1 36 36 H 1.08996 * 109.47429 * 180.02562 * 9 2 1 37 37 H 1.08996 * 109.47811 * 300.00850 * 10 9 2 38 38 H 1.08992 * 109.47504 * 180.02562 * 10 9 2 39 39 H 1.08995 * 109.46691 * 179.97438 * 11 10 9 40 40 H 1.00912 * 110.99792 * 283.59948 * 12 11 10 41 41 H 1.09006 * 109.47406 * 65.03136 * 13 12 11 42 42 H 1.09004 * 109.46954 * 305.02687 * 13 12 11 43 43 H 0.97001 * 119.99958 * 184.99826 * 18 17 15 44 44 H 1.08991 * 117.49916 * 215.00442 * 23 14 13 45 45 H 1.09004 * 117.49539 * 0.02562 * 23 14 13 46 46 H 1.09004 * 117.49504 * 359.97438 * 24 14 13 47 47 H 1.08997 * 117.50046 * 144.96686 * 24 14 13 48 48 H 1.09002 * 109.46795 * 179.97438 * 25 11 10 49 49 H 1.08996 * 109.47431 * 299.99846 * 25 11 10 50 50 H 1.09000 * 109.47352 * 59.99749 * 26 2 1 51 51 H 1.08996 * 109.47202 * 180.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8223 1.8746 1.0396 5 6 3.2867 3.1766 1.0373 6 6 2.9531 4.0276 0.0004 7 6 2.1592 3.5752 -1.0369 8 6 1.6983 2.2719 -1.0368 9 6 2.0400 -0.7213 1.2492 10 6 1.5299 -2.1637 1.2494 11 6 2.0400 -2.8851 0.0000 12 7 3.5090 -2.8851 0.0001 13 6 4.0354 -3.9410 -0.8749 14 6 5.5597 -3.9919 -0.7528 15 6 6.0948 -4.1435 0.6479 16 1 7.0111 -3.6476 0.9325 17 6 5.4115 -4.9104 1.5676 18 7 4.2513 -5.4414 1.2487 19 14 6.1336 -5.1953 3.2667 20 1 6.3159 -3.8908 3.9522 21 1 5.2116 -6.0473 4.0599 22 1 7.4477 -5.8750 3.1384 23 6 6.3369 -4.6696 -1.8830 24 6 6.3756 -3.1468 -1.7330 25 6 1.5300 -2.1638 -1.2491 26 6 2.0400 -0.7213 -1.2492 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.0799 1.2108 1.8516 31 1 3.9074 3.5299 1.8475 32 1 3.3132 5.0458 0.0003 33 1 1.8989 4.2400 -1.8473 34 1 1.0778 1.9185 -1.8470 35 1 1.6766 -0.2074 2.1392 36 1 3.1299 -0.7209 1.2495 37 1 0.4400 -2.1638 1.2493 38 1 1.8929 -2.6774 2.1395 39 1 1.6770 -3.9128 0.0003 40 1 3.8706 -1.9813 -0.2659 41 1 3.7607 -3.7275 -1.9080 42 1 3.6149 -4.9019 -0.5783 43 1 3.7367 -5.9198 1.9174 44 1 7.2351 -5.2251 -1.6136 45 1 5.7622 -5.0789 -2.7139 46 1 5.8265 -2.5549 -2.4653 47 1 7.2991 -2.7000 -1.3648 48 1 1.8937 -2.6774 -2.1391 49 1 0.4400 -2.1638 -1.2492 50 1 1.6767 -0.2075 -2.1392 51 1 3.1300 -0.7216 -1.2490 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430743682.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:18 Heat of formation + Delta-G solvation = 43.278599 kcal Electronic energy + Delta-G solvation = -27476.361989 eV Core-core repulsion = 24147.608115 eV Total energy + Delta-G solvation = -3328.753873 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.37359 -38.27005 -36.59960 -34.14001 -31.93602 -31.28131 -30.71004 -30.14270 -28.63597 -26.55092 -25.38023 -23.94564 -23.15083 -22.68711 -21.35643 -21.08680 -20.04810 -18.80532 -17.58863 -17.07535 -16.29735 -15.35515 -15.09792 -14.81277 -14.55569 -14.28080 -14.09764 -14.05514 -13.56008 -13.37522 -13.21900 -12.90491 -12.52260 -12.37627 -12.23676 -12.16239 -11.75560 -11.54280 -11.46299 -11.24323 -11.14730 -10.95326 -10.85429 -10.66654 -10.60058 -10.47883 -10.39097 -10.06348 -9.87939 -9.65174 -9.62041 -9.20426 -8.85448 -8.75230 -8.59599 -8.53727 -8.00016 -6.96336 -5.71854 -3.83082 1.43182 1.46132 3.40400 3.44227 3.48105 3.84827 4.53911 4.68057 4.77602 5.01713 5.06263 5.06554 5.14530 5.15731 5.35455 5.41889 5.49667 5.55360 5.58012 5.64988 5.70796 5.72136 5.84484 5.91392 5.94256 6.00020 6.04348 6.10409 6.13260 6.14680 6.23818 6.28069 6.34876 6.43501 6.50507 6.53523 6.56580 6.63293 6.71450 6.72590 6.74168 6.79398 6.84973 6.90409 7.01613 7.02506 7.07874 7.30063 7.40569 7.78505 8.18118 8.45850 8.54940 8.83087 9.11118 9.76816 11.21719 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.014102 B = 0.004107 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.072111 B = 6816.187021 C = 6879.373366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.020 4.020 3 C -0.060 4.060 4 C -0.117 4.117 5 C -0.119 4.119 6 C -0.132 4.132 7 C -0.123 4.123 8 C -0.118 4.118 9 C -0.107 4.107 10 C -0.103 4.103 11 C 0.096 3.904 12 N -0.635 5.635 13 C 0.112 3.888 14 C 0.064 3.936 15 C -0.476 4.476 16 H 0.050 0.950 17 C 0.089 3.911 18 N -0.865 5.865 19 Si 0.888 3.112 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.282 1.282 23 C -0.212 4.212 24 C -0.220 4.220 25 C -0.154 4.154 26 C -0.101 4.101 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.067 0.933 30 H 0.129 0.871 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.054 0.946 36 H 0.077 0.923 37 H 0.052 0.948 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.318 0.682 41 H -0.029 1.029 42 H 0.115 0.885 43 H 0.254 0.746 44 H 0.075 0.925 45 H 0.060 0.940 46 H 0.060 0.940 47 H 0.071 0.929 48 H 0.057 0.943 49 H 0.059 0.941 50 H 0.054 0.946 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.055 13.596 -2.921 16.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.020 4.020 3 C -0.060 4.060 4 C -0.135 4.135 5 C -0.138 4.138 6 C -0.150 4.150 7 C -0.141 4.141 8 C -0.136 4.136 9 C -0.145 4.145 10 C -0.141 4.141 11 C -0.015 4.015 12 N -0.264 5.264 13 C -0.016 4.016 14 C 0.063 3.937 15 C -0.513 4.513 16 H 0.069 0.931 17 C -0.114 4.114 18 N -0.501 5.501 19 Si 0.716 3.284 20 H -0.205 1.205 21 H -0.216 1.216 22 H -0.208 1.208 23 C -0.250 4.250 24 C -0.257 4.257 25 C -0.193 4.193 26 C -0.139 4.139 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.147 0.853 31 H 0.137 0.863 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.137 0.863 41 H -0.012 1.012 42 H 0.132 0.868 43 H 0.065 0.935 44 H 0.093 0.907 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.090 0.910 48 H 0.076 0.924 49 H 0.078 0.922 50 H 0.073 0.927 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.129 13.023 -2.266 16.065 hybrid contribution 0.349 0.412 -0.179 0.569 sum -8.780 13.435 -2.445 16.235 Atomic orbital electron populations 1.21949 0.94223 1.02196 1.01140 1.19507 0.95292 0.90273 0.96892 1.19956 0.96587 0.95358 0.94141 1.21307 0.97526 0.95787 0.98878 1.21161 0.99908 0.94109 0.98573 1.21079 0.99369 0.99557 0.94988 1.21075 0.98585 0.95924 0.98530 1.20981 1.00561 0.93615 0.98474 1.21631 1.01912 0.95575 0.95350 1.21517 0.98420 0.94793 0.99343 1.21410 0.90314 0.98139 0.91660 1.60229 1.03038 1.06632 1.56546 1.21651 0.94280 0.97499 0.88181 1.19056 0.89968 0.94681 0.89986 1.20217 1.08062 1.29107 0.93922 0.93133 1.24729 0.94527 0.94719 0.97448 1.69793 1.11849 1.35617 1.32879 0.86761 0.78732 0.77963 0.84913 1.20502 1.21570 1.20797 1.22972 1.04290 0.93617 1.04151 1.22897 1.03630 0.93031 1.06157 1.22347 1.00591 0.95706 1.00679 1.21540 1.01003 0.95440 0.95871 0.92996 0.93170 0.91430 0.85274 0.86347 0.86628 0.86585 0.86480 0.92710 0.90433 0.92987 0.91158 0.90760 0.86270 1.01160 0.86766 0.93509 0.90657 0.92102 0.92109 0.91021 0.92449 0.92236 0.92685 0.91610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 7.59 37.16 0.28 -1.29 16 2 C -0.02 -0.25 0.60 -155.66 -0.09 -0.34 16 3 C -0.06 -0.77 4.76 -104.63 -0.50 -1.27 16 4 C -0.12 -1.50 8.98 -39.58 -0.36 -1.86 16 5 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16 6 C -0.13 -1.44 10.05 -39.59 -0.40 -1.83 16 7 C -0.12 -1.35 10.05 -39.58 -0.40 -1.74 16 8 C -0.12 -1.40 8.71 -39.58 -0.34 -1.74 16 9 C -0.11 -1.53 3.14 -26.73 -0.08 -1.61 16 10 C -0.10 -1.60 5.36 -26.73 -0.14 -1.74 16 11 C 0.10 1.66 2.86 -67.71 -0.19 1.46 16 12 N -0.64 -13.02 5.19 -106.72 -0.55 -13.57 16 13 C 0.11 2.57 4.40 -3.82 -0.02 2.55 16 14 C 0.06 1.57 2.15 -155.66 -0.34 1.23 16 15 C -0.48 -12.83 8.74 -34.44 -0.30 -13.13 16 16 H 0.05 1.40 7.82 -52.49 -0.41 0.99 16 17 C 0.09 2.37 5.31 -17.82 -0.09 2.28 16 18 N -0.86 -23.01 10.11 55.43 0.56 -22.45 16 19 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 C -0.21 -4.87 9.96 -26.70 -0.27 -5.13 16 24 C -0.22 -4.88 9.92 -26.70 -0.26 -5.15 16 25 C -0.15 -2.26 5.20 -26.73 -0.14 -2.40 16 26 C -0.10 -1.39 4.29 -26.73 -0.11 -1.50 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.52 7.39 -51.93 -0.38 0.14 16 29 H 0.07 0.77 4.81 -51.93 -0.25 0.52 16 30 H 0.13 1.64 5.89 -52.49 -0.31 1.33 16 31 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 33 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.12 1.24 7.10 -52.49 -0.37 0.87 16 35 H 0.05 0.72 7.50 -51.93 -0.39 0.33 16 36 H 0.08 1.26 6.47 -51.93 -0.34 0.93 16 37 H 0.05 0.71 6.43 -51.93 -0.33 0.38 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.07 1.42 7.80 -51.93 -0.41 1.02 16 40 H 0.32 6.42 5.48 -39.29 -0.22 6.20 16 41 H -0.03 -0.65 7.24 -51.93 -0.38 -1.02 16 42 H 0.11 2.91 5.74 -51.93 -0.30 2.62 16 43 H 0.25 6.63 8.32 -40.82 -0.34 6.29 16 44 H 0.07 1.75 8.14 -51.93 -0.42 1.32 16 45 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 46 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 47 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 48 H 0.06 0.91 7.27 -51.93 -0.38 0.53 16 49 H 0.06 0.78 6.43 -51.93 -0.33 0.45 16 50 H 0.05 0.70 7.39 -51.93 -0.38 0.31 16 51 H 0.07 1.04 6.31 -51.93 -0.33 0.71 16 LS Contribution 376.69 15.07 5.68 5.68 Total: -1.00 -26.72 376.69 -11.94 -38.66 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: -8.44 Total: 10.56 kcal Atomic # 6 Polarization: -30.85 SS G_CDS: -4.15 Total: -35.01 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: 0.01 Total: -36.02 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -26.72 -11.94 -38.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430743682.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.937 kcal (2) G-P(sol) polarization free energy of solvation -26.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds