Wall clock time and date at job start Tue Mar 31 2020 10:40:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.50696 * 109.47145 * 2 1
4 4 C 1.38237 * 120.00079 * 119.72520 * 3 2 1
5 5 C 1.38235 * 119.99681 * 179.78671 * 4 3 2
6 6 C 1.38232 * 120.00106 * 0.46650 * 5 4 3
7 7 C 1.38230 * 120.00374 * 359.76341 * 6 5 4
8 8 C 1.38235 * 119.99741 * 299.99973 * 3 2 1
9 9 C 1.53002 * 109.47201 * 120.00083 * 2 1 3
10 10 C 1.52999 * 109.47378 * 59.99459 * 9 2 1
11 11 C 1.53013 * 109.46670 * 60.00254 * 10 9 2
12 12 N 1.46901 * 109.46777 * 60.00297 * 11 10 9
13 13 C 1.46899 * 110.99876 * 159.64883 * 12 11 10
14 14 C 1.53004 * 109.47145 * 185.02719 * 13 12 11
15 15 C 1.50706 * 115.54845 * 54.17671 * 14 13 12
16 16 H 1.08001 * 119.99621 * 215.59167 * 15 14 13
17 17 C 1.37872 * 119.99882 * 35.31077 * 15 14 13
18 18 N 1.31516 * 120.00130 * 355.76952 * 17 15 14
19 19 Si 1.86797 * 120.00032 * 175.77072 * 17 15 14
20 20 H 1.48496 * 109.47522 * 59.99773 * 19 17 15
21 21 H 1.48501 * 109.47496 * 180.02562 * 19 17 15
22 22 H 1.48502 * 109.46927 * 300.00015 * 19 17 15
23 23 C 1.52998 * 117.50140 * 199.84569 * 14 13 12
24 24 C 1.52998 * 117.50200 * 268.50646 * 14 13 12
25 25 C 1.52992 * 109.46959 * 300.00000 * 11 10 9
26 26 C 1.53001 * 109.47353 * 239.99931 * 2 1 3
27 27 H 1.09002 * 109.47460 * 299.99996 * 1 2 3
28 28 H 1.09000 * 109.47096 * 60.00476 * 1 2 3
29 29 H 1.09001 * 109.47026 * 179.97438 * 1 2 3
30 30 H 1.07995 * 120.00049 * 0.02562 * 4 3 2
31 31 H 1.08001 * 119.99903 * 180.25505 * 5 4 3
32 32 H 1.08002 * 119.99873 * 179.79159 * 6 5 4
33 33 H 1.07999 * 120.00313 * 180.02562 * 7 6 5
34 34 H 1.07998 * 120.00197 * 359.97438 * 8 3 2
35 35 H 1.09002 * 109.46849 * 300.00295 * 9 2 1
36 36 H 1.08996 * 109.47429 * 180.02562 * 9 2 1
37 37 H 1.08996 * 109.47811 * 300.00850 * 10 9 2
38 38 H 1.08992 * 109.47504 * 180.02562 * 10 9 2
39 39 H 1.08995 * 109.46691 * 179.97438 * 11 10 9
40 40 H 1.00912 * 110.99792 * 283.59948 * 12 11 10
41 41 H 1.09006 * 109.47406 * 65.03136 * 13 12 11
42 42 H 1.09004 * 109.46954 * 305.02687 * 13 12 11
43 43 H 0.97001 * 119.99958 * 184.99826 * 18 17 15
44 44 H 1.08991 * 117.49916 * 215.00442 * 23 14 13
45 45 H 1.09004 * 117.49539 * 0.02562 * 23 14 13
46 46 H 1.09004 * 117.49504 * 359.97438 * 24 14 13
47 47 H 1.08997 * 117.50046 * 144.96686 * 24 14 13
48 48 H 1.09002 * 109.46795 * 179.97438 * 25 11 10
49 49 H 1.08996 * 109.47431 * 299.99846 * 25 11 10
50 50 H 1.09000 * 109.47352 * 59.99749 * 26 2 1
51 51 H 1.08996 * 109.47202 * 180.02562 * 26 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 6 2.8223 1.8746 1.0396
5 6 3.2867 3.1766 1.0373
6 6 2.9531 4.0276 0.0004
7 6 2.1592 3.5752 -1.0369
8 6 1.6983 2.2719 -1.0368
9 6 2.0400 -0.7213 1.2492
10 6 1.5299 -2.1637 1.2494
11 6 2.0400 -2.8851 0.0000
12 7 3.5090 -2.8851 0.0001
13 6 4.0354 -3.9410 -0.8749
14 6 5.5597 -3.9919 -0.7528
15 6 6.0948 -4.1435 0.6479
16 1 7.0111 -3.6476 0.9325
17 6 5.4115 -4.9104 1.5676
18 7 4.2513 -5.4414 1.2487
19 14 6.1336 -5.1953 3.2667
20 1 6.3159 -3.8908 3.9522
21 1 5.2116 -6.0473 4.0599
22 1 7.4477 -5.8750 3.1384
23 6 6.3369 -4.6696 -1.8830
24 6 6.3756 -3.1468 -1.7330
25 6 1.5300 -2.1638 -1.2491
26 6 2.0400 -0.7213 -1.2492
27 1 -0.3634 0.5138 0.8900
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3633 -1.0277 -0.0005
30 1 3.0799 1.2108 1.8516
31 1 3.9074 3.5299 1.8475
32 1 3.3132 5.0458 0.0003
33 1 1.8989 4.2400 -1.8473
34 1 1.0778 1.9185 -1.8470
35 1 1.6766 -0.2074 2.1392
36 1 3.1299 -0.7209 1.2495
37 1 0.4400 -2.1638 1.2493
38 1 1.8929 -2.6774 2.1395
39 1 1.6770 -3.9128 0.0003
40 1 3.8706 -1.9813 -0.2659
41 1 3.7607 -3.7275 -1.9080
42 1 3.6149 -4.9019 -0.5783
43 1 3.7367 -5.9198 1.9174
44 1 7.2351 -5.2251 -1.6136
45 1 5.7622 -5.0789 -2.7139
46 1 5.8265 -2.5549 -2.4653
47 1 7.2991 -2.7000 -1.3648
48 1 1.8937 -2.6774 -2.1391
49 1 0.4400 -2.1638 -1.2492
50 1 1.6767 -0.2075 -2.1392
51 1 3.1300 -0.7216 -1.2490
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000430743682.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:40:18
Heat of formation + Delta-G solvation = 43.278599 kcal
Electronic energy + Delta-G solvation = -27476.361989 eV
Core-core repulsion = 24147.608115 eV
Total energy + Delta-G solvation = -3328.753873 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 313.210 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-40.37359 -38.27005 -36.59960 -34.14001 -31.93602 -31.28131 -30.71004 -30.14270
-28.63597 -26.55092 -25.38023 -23.94564 -23.15083 -22.68711 -21.35643 -21.08680
-20.04810 -18.80532 -17.58863 -17.07535 -16.29735 -15.35515 -15.09792 -14.81277
-14.55569 -14.28080 -14.09764 -14.05514 -13.56008 -13.37522 -13.21900 -12.90491
-12.52260 -12.37627 -12.23676 -12.16239 -11.75560 -11.54280 -11.46299 -11.24323
-11.14730 -10.95326 -10.85429 -10.66654 -10.60058 -10.47883 -10.39097 -10.06348
-9.87939 -9.65174 -9.62041 -9.20426 -8.85448 -8.75230 -8.59599 -8.53727
-8.00016 -6.96336 -5.71854 -3.83082 1.43182 1.46132 3.40400 3.44227
3.48105 3.84827 4.53911 4.68057 4.77602 5.01713 5.06263 5.06554
5.14530 5.15731 5.35455 5.41889 5.49667 5.55360 5.58012 5.64988
5.70796 5.72136 5.84484 5.91392 5.94256 6.00020 6.04348 6.10409
6.13260 6.14680 6.23818 6.28069 6.34876 6.43501 6.50507 6.53523
6.56580 6.63293 6.71450 6.72590 6.74168 6.79398 6.84973 6.90409
7.01613 7.02506 7.07874 7.30063 7.40569 7.78505 8.18118 8.45850
8.54940 8.83087 9.11118 9.76816 11.21719
Molecular weight = 313.21amu
Principal moments of inertia in cm(-1)
A = 0.014102 B = 0.004107 C = 0.004069
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1985.072111 B = 6816.187021 C = 6879.373366
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.020 4.020
3 C -0.060 4.060
4 C -0.117 4.117
5 C -0.119 4.119
6 C -0.132 4.132
7 C -0.123 4.123
8 C -0.118 4.118
9 C -0.107 4.107
10 C -0.103 4.103
11 C 0.096 3.904
12 N -0.635 5.635
13 C 0.112 3.888
14 C 0.064 3.936
15 C -0.476 4.476
16 H 0.050 0.950
17 C 0.089 3.911
18 N -0.865 5.865
19 Si 0.888 3.112
20 H -0.279 1.279
21 H -0.290 1.290
22 H -0.282 1.282
23 C -0.212 4.212
24 C -0.220 4.220
25 C -0.154 4.154
26 C -0.101 4.101
27 H 0.051 0.949
28 H 0.049 0.951
29 H 0.067 0.933
30 H 0.129 0.871
31 H 0.118 0.882
32 H 0.116 0.884
33 H 0.116 0.884
34 H 0.117 0.883
35 H 0.054 0.946
36 H 0.077 0.923
37 H 0.052 0.948
38 H 0.070 0.930
39 H 0.074 0.926
40 H 0.318 0.682
41 H -0.029 1.029
42 H 0.115 0.885
43 H 0.254 0.746
44 H 0.075 0.925
45 H 0.060 0.940
46 H 0.060 0.940
47 H 0.071 0.929
48 H 0.057 0.943
49 H 0.059 0.941
50 H 0.054 0.946
51 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.055 13.596 -2.921 16.595
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.020 4.020
3 C -0.060 4.060
4 C -0.135 4.135
5 C -0.138 4.138
6 C -0.150 4.150
7 C -0.141 4.141
8 C -0.136 4.136
9 C -0.145 4.145
10 C -0.141 4.141
11 C -0.015 4.015
12 N -0.264 5.264
13 C -0.016 4.016
14 C 0.063 3.937
15 C -0.513 4.513
16 H 0.069 0.931
17 C -0.114 4.114
18 N -0.501 5.501
19 Si 0.716 3.284
20 H -0.205 1.205
21 H -0.216 1.216
22 H -0.208 1.208
23 C -0.250 4.250
24 C -0.257 4.257
25 C -0.193 4.193
26 C -0.139 4.139
27 H 0.070 0.930
28 H 0.068 0.932
29 H 0.086 0.914
30 H 0.147 0.853
31 H 0.137 0.863
32 H 0.134 0.866
33 H 0.134 0.866
34 H 0.135 0.865
35 H 0.073 0.927
36 H 0.096 0.904
37 H 0.070 0.930
38 H 0.088 0.912
39 H 0.092 0.908
40 H 0.137 0.863
41 H -0.012 1.012
42 H 0.132 0.868
43 H 0.065 0.935
44 H 0.093 0.907
45 H 0.079 0.921
46 H 0.079 0.921
47 H 0.090 0.910
48 H 0.076 0.924
49 H 0.078 0.922
50 H 0.073 0.927
51 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -9.129 13.023 -2.266 16.065
hybrid contribution 0.349 0.412 -0.179 0.569
sum -8.780 13.435 -2.445 16.235
Atomic orbital electron populations
1.21949 0.94223 1.02196 1.01140 1.19507 0.95292 0.90273 0.96892
1.19956 0.96587 0.95358 0.94141 1.21307 0.97526 0.95787 0.98878
1.21161 0.99908 0.94109 0.98573 1.21079 0.99369 0.99557 0.94988
1.21075 0.98585 0.95924 0.98530 1.20981 1.00561 0.93615 0.98474
1.21631 1.01912 0.95575 0.95350 1.21517 0.98420 0.94793 0.99343
1.21410 0.90314 0.98139 0.91660 1.60229 1.03038 1.06632 1.56546
1.21651 0.94280 0.97499 0.88181 1.19056 0.89968 0.94681 0.89986
1.20217 1.08062 1.29107 0.93922 0.93133 1.24729 0.94527 0.94719
0.97448 1.69793 1.11849 1.35617 1.32879 0.86761 0.78732 0.77963
0.84913 1.20502 1.21570 1.20797 1.22972 1.04290 0.93617 1.04151
1.22897 1.03630 0.93031 1.06157 1.22347 1.00591 0.95706 1.00679
1.21540 1.01003 0.95440 0.95871 0.92996 0.93170 0.91430 0.85274
0.86347 0.86628 0.86585 0.86480 0.92710 0.90433 0.92987 0.91158
0.90760 0.86270 1.01160 0.86766 0.93509 0.90657 0.92102 0.92109
0.91021 0.92449 0.92236 0.92685 0.91610
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.57 7.59 37.16 0.28 -1.29 16
2 C -0.02 -0.25 0.60 -155.66 -0.09 -0.34 16
3 C -0.06 -0.77 4.76 -104.63 -0.50 -1.27 16
4 C -0.12 -1.50 8.98 -39.58 -0.36 -1.86 16
5 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16
6 C -0.13 -1.44 10.05 -39.59 -0.40 -1.83 16
7 C -0.12 -1.35 10.05 -39.58 -0.40 -1.74 16
8 C -0.12 -1.40 8.71 -39.58 -0.34 -1.74 16
9 C -0.11 -1.53 3.14 -26.73 -0.08 -1.61 16
10 C -0.10 -1.60 5.36 -26.73 -0.14 -1.74 16
11 C 0.10 1.66 2.86 -67.71 -0.19 1.46 16
12 N -0.64 -13.02 5.19 -106.72 -0.55 -13.57 16
13 C 0.11 2.57 4.40 -3.82 -0.02 2.55 16
14 C 0.06 1.57 2.15 -155.66 -0.34 1.23 16
15 C -0.48 -12.83 8.74 -34.44 -0.30 -13.13 16
16 H 0.05 1.40 7.82 -52.49 -0.41 0.99 16
17 C 0.09 2.37 5.31 -17.82 -0.09 2.28 16
18 N -0.86 -23.01 10.11 55.43 0.56 -22.45 16
19 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16
20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16
21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16
22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16
23 C -0.21 -4.87 9.96 -26.70 -0.27 -5.13 16
24 C -0.22 -4.88 9.92 -26.70 -0.26 -5.15 16
25 C -0.15 -2.26 5.20 -26.73 -0.14 -2.40 16
26 C -0.10 -1.39 4.29 -26.73 -0.11 -1.50 16
27 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16
28 H 0.05 0.52 7.39 -51.93 -0.38 0.14 16
29 H 0.07 0.77 4.81 -51.93 -0.25 0.52 16
30 H 0.13 1.64 5.89 -52.49 -0.31 1.33 16
31 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16
32 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16
33 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16
34 H 0.12 1.24 7.10 -52.49 -0.37 0.87 16
35 H 0.05 0.72 7.50 -51.93 -0.39 0.33 16
36 H 0.08 1.26 6.47 -51.93 -0.34 0.93 16
37 H 0.05 0.71 6.43 -51.93 -0.33 0.38 16
38 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16
39 H 0.07 1.42 7.80 -51.93 -0.41 1.02 16
40 H 0.32 6.42 5.48 -39.29 -0.22 6.20 16
41 H -0.03 -0.65 7.24 -51.93 -0.38 -1.02 16
42 H 0.11 2.91 5.74 -51.93 -0.30 2.62 16
43 H 0.25 6.63 8.32 -40.82 -0.34 6.29 16
44 H 0.07 1.75 8.14 -51.93 -0.42 1.32 16
45 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16
46 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16
47 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16
48 H 0.06 0.91 7.27 -51.93 -0.38 0.53 16
49 H 0.06 0.78 6.43 -51.93 -0.33 0.45 16
50 H 0.05 0.70 7.39 -51.93 -0.38 0.31 16
51 H 0.07 1.04 6.31 -51.93 -0.33 0.71 16
LS Contribution 376.69 15.07 5.68 5.68
Total: -1.00 -26.72 376.69 -11.94 -38.66
By element:
Atomic # 1 Polarization: 19.00 SS G_CDS: -8.44 Total: 10.56 kcal
Atomic # 6 Polarization: -30.85 SS G_CDS: -4.15 Total: -35.01 kcal
Atomic # 7 Polarization: -36.03 SS G_CDS: 0.01 Total: -36.02 kcal
Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal
Total LS contribution 5.68 Total: 5.68 kcal
Total: -26.72 -11.94 -38.66 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000430743682.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 81.937 kcal
(2) G-P(sol) polarization free energy of solvation -26.721 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.215 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.936 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.658 kcal
(6) G-S(sol) free energy of system = (1) + (5) 43.279 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds