Wall clock time and date at job start Tue Mar 31 2020 10:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50696 * 109.47145 * 2 1 4 4 C 1.38237 * 120.00079 * 119.72520 * 3 2 1 5 5 C 1.38235 * 119.99681 * 179.78671 * 4 3 2 6 6 C 1.38232 * 120.00106 * 0.46650 * 5 4 3 7 7 C 1.38230 * 120.00374 * 359.76341 * 6 5 4 8 8 C 1.38235 * 119.99741 * 299.99973 * 3 2 1 9 9 C 1.53002 * 109.47201 * 120.00083 * 2 1 3 10 10 C 1.52999 * 109.47378 * 59.99459 * 9 2 1 11 11 C 1.53013 * 109.46670 * 60.00254 * 10 9 2 12 12 N 1.46901 * 109.46777 * 60.00297 * 11 10 9 13 13 C 1.46899 * 110.99876 * 159.64883 * 12 11 10 14 14 C 1.53004 * 109.47145 * 185.02719 * 13 12 11 15 15 C 1.50706 * 115.54845 * 54.17671 * 14 13 12 16 16 H 1.08001 * 119.99621 * 215.59167 * 15 14 13 17 17 C 1.37872 * 119.99882 * 35.31077 * 15 14 13 18 18 N 1.31516 * 120.00130 * 355.76952 * 17 15 14 19 19 Si 1.86797 * 120.00032 * 175.77072 * 17 15 14 20 20 H 1.48496 * 109.47522 * 59.99773 * 19 17 15 21 21 H 1.48501 * 109.47496 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46927 * 300.00015 * 19 17 15 23 23 C 1.52998 * 117.50140 * 199.84569 * 14 13 12 24 24 C 1.52998 * 117.50200 * 268.50646 * 14 13 12 25 25 C 1.52992 * 109.46959 * 300.00000 * 11 10 9 26 26 C 1.53001 * 109.47353 * 239.99931 * 2 1 3 27 27 H 1.09002 * 109.47460 * 299.99996 * 1 2 3 28 28 H 1.09000 * 109.47096 * 60.00476 * 1 2 3 29 29 H 1.09001 * 109.47026 * 179.97438 * 1 2 3 30 30 H 1.07995 * 120.00049 * 0.02562 * 4 3 2 31 31 H 1.08001 * 119.99903 * 180.25505 * 5 4 3 32 32 H 1.08002 * 119.99873 * 179.79159 * 6 5 4 33 33 H 1.07999 * 120.00313 * 180.02562 * 7 6 5 34 34 H 1.07998 * 120.00197 * 359.97438 * 8 3 2 35 35 H 1.09002 * 109.46849 * 300.00295 * 9 2 1 36 36 H 1.08996 * 109.47429 * 180.02562 * 9 2 1 37 37 H 1.08996 * 109.47811 * 300.00850 * 10 9 2 38 38 H 1.08992 * 109.47504 * 180.02562 * 10 9 2 39 39 H 1.08995 * 109.46691 * 179.97438 * 11 10 9 40 40 H 1.00912 * 110.99792 * 283.59948 * 12 11 10 41 41 H 1.09006 * 109.47406 * 65.03136 * 13 12 11 42 42 H 1.09004 * 109.46954 * 305.02687 * 13 12 11 43 43 H 0.97001 * 119.99958 * 184.99826 * 18 17 15 44 44 H 1.08991 * 117.49916 * 215.00442 * 23 14 13 45 45 H 1.09004 * 117.49539 * 0.02562 * 23 14 13 46 46 H 1.09004 * 117.49504 * 359.97438 * 24 14 13 47 47 H 1.08997 * 117.50046 * 144.96686 * 24 14 13 48 48 H 1.09002 * 109.46795 * 179.97438 * 25 11 10 49 49 H 1.08996 * 109.47431 * 299.99846 * 25 11 10 50 50 H 1.09000 * 109.47352 * 59.99749 * 26 2 1 51 51 H 1.08996 * 109.47202 * 180.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8223 1.8746 1.0396 5 6 3.2867 3.1766 1.0373 6 6 2.9531 4.0276 0.0004 7 6 2.1592 3.5752 -1.0369 8 6 1.6983 2.2719 -1.0368 9 6 2.0400 -0.7213 1.2492 10 6 1.5299 -2.1637 1.2494 11 6 2.0400 -2.8851 0.0000 12 7 3.5090 -2.8851 0.0001 13 6 4.0354 -3.9410 -0.8749 14 6 5.5597 -3.9919 -0.7528 15 6 6.0948 -4.1435 0.6479 16 1 7.0111 -3.6476 0.9325 17 6 5.4115 -4.9104 1.5676 18 7 4.2513 -5.4414 1.2487 19 14 6.1336 -5.1953 3.2667 20 1 6.3159 -3.8908 3.9522 21 1 5.2116 -6.0473 4.0599 22 1 7.4477 -5.8750 3.1384 23 6 6.3369 -4.6696 -1.8830 24 6 6.3756 -3.1468 -1.7330 25 6 1.5300 -2.1638 -1.2491 26 6 2.0400 -0.7213 -1.2492 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.0799 1.2108 1.8516 31 1 3.9074 3.5299 1.8475 32 1 3.3132 5.0458 0.0003 33 1 1.8989 4.2400 -1.8473 34 1 1.0778 1.9185 -1.8470 35 1 1.6766 -0.2074 2.1392 36 1 3.1299 -0.7209 1.2495 37 1 0.4400 -2.1638 1.2493 38 1 1.8929 -2.6774 2.1395 39 1 1.6770 -3.9128 0.0003 40 1 3.8706 -1.9813 -0.2659 41 1 3.7607 -3.7275 -1.9080 42 1 3.6149 -4.9019 -0.5783 43 1 3.7367 -5.9198 1.9174 44 1 7.2351 -5.2251 -1.6136 45 1 5.7622 -5.0789 -2.7139 46 1 5.8265 -2.5549 -2.4653 47 1 7.2991 -2.7000 -1.3648 48 1 1.8937 -2.6774 -2.1391 49 1 0.4400 -2.1638 -1.2492 50 1 1.6767 -0.2075 -2.1392 51 1 3.1300 -0.7216 -1.2490 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430743682.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:17 Heat of formation + Delta-G solvation = 33.167253 kcal Electronic energy + Delta-G solvation = -27476.800449 eV Core-core repulsion = 24147.608115 eV Total energy + Delta-G solvation = -3329.192334 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.44410 -39.41119 -38.30541 -35.46076 -33.96503 -32.32007 -31.94338 -31.21750 -29.72334 -27.67754 -27.35225 -25.61897 -24.21190 -23.74180 -22.90170 -22.38547 -21.18805 -20.73244 -18.79191 -18.21547 -17.94202 -16.68128 -16.48382 -16.22756 -15.89717 -15.45671 -15.40313 -15.36253 -14.93561 -14.84393 -14.25912 -14.17892 -13.79663 -13.72089 -13.45979 -13.32242 -13.12301 -13.01385 -12.88902 -12.79621 -12.51030 -12.43768 -12.25649 -12.19372 -11.97927 -11.95078 -11.75351 -11.64364 -11.36413 -10.96529 -10.87233 -10.82168 -10.71062 -10.43614 -9.96000 -9.73151 -9.49000 -8.57196 -7.74000 -5.92393 0.55404 0.58326 1.47232 1.48352 1.54131 2.54288 2.96596 3.18315 3.62260 3.71917 3.76489 3.88869 3.97034 4.19685 4.22582 4.25315 4.35494 4.37898 4.43109 4.43968 4.55820 4.61934 4.64553 4.67113 4.70496 4.77874 4.83908 4.86581 4.88884 4.94545 5.00232 5.03887 5.10230 5.16824 5.17509 5.22023 5.23512 5.25940 5.33518 5.37118 5.45092 5.51040 5.56491 5.63174 5.65973 5.70026 5.72385 5.77282 5.88058 6.19725 6.21711 6.54563 6.80440 7.07866 7.15892 7.68463 9.14897 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.014102 B = 0.004107 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.072111 B = 6816.187021 C = 6879.373366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.011 4.011 3 C -0.073 4.073 4 C -0.138 4.138 5 C -0.130 4.130 6 C -0.135 4.135 7 C -0.126 4.126 8 C -0.126 4.126 9 C -0.099 4.099 10 C -0.096 4.096 11 C 0.096 3.904 12 N -0.647 5.647 13 C 0.128 3.872 14 C 0.034 3.966 15 C -0.495 4.495 16 H 0.035 0.965 17 C 0.055 3.945 18 N -0.873 5.873 19 Si 0.937 3.063 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.282 1.282 23 C -0.210 4.210 24 C -0.201 4.201 25 C -0.143 4.143 26 C -0.094 4.094 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.120 0.880 31 H 0.131 0.869 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.131 0.869 35 H 0.063 0.937 36 H 0.051 0.949 37 H 0.076 0.924 38 H 0.041 0.959 39 H 0.051 0.949 40 H 0.320 0.680 41 H -0.023 1.023 42 H 0.086 0.914 43 H 0.252 0.748 44 H 0.068 0.932 45 H 0.074 0.926 46 H 0.079 0.921 47 H 0.070 0.930 48 H 0.045 0.955 49 H 0.082 0.918 50 H 0.073 0.927 51 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.216 15.502 -3.783 18.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.011 4.011 3 C -0.073 4.073 4 C -0.156 4.156 5 C -0.148 4.148 6 C -0.153 4.153 7 C -0.144 4.144 8 C -0.143 4.143 9 C -0.137 4.137 10 C -0.134 4.134 11 C -0.015 4.015 12 N -0.276 5.276 13 C -0.001 4.001 14 C 0.033 3.967 15 C -0.533 4.533 16 H 0.053 0.947 17 C -0.147 4.147 18 N -0.510 5.510 19 Si 0.764 3.236 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.208 1.208 23 C -0.249 4.249 24 C -0.238 4.238 25 C -0.182 4.182 26 C -0.132 4.132 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.138 0.862 31 H 0.149 0.851 32 H 0.157 0.843 33 H 0.159 0.841 34 H 0.149 0.851 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.094 0.906 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.139 0.861 41 H -0.006 1.006 42 H 0.104 0.896 43 H 0.062 0.938 44 H 0.086 0.914 45 H 0.093 0.907 46 H 0.097 0.903 47 H 0.088 0.912 48 H 0.064 0.936 49 H 0.100 0.900 50 H 0.091 0.909 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -10.292 14.930 -3.130 18.402 hybrid contribution 0.746 -0.152 0.087 0.766 sum -9.546 14.778 -3.043 17.854 Atomic orbital electron populations 1.21923 0.92664 1.02495 1.02089 1.19388 0.96374 0.90153 0.95167 1.19976 0.97199 0.95354 0.94768 1.21382 0.98510 0.96499 0.99180 1.21399 1.00067 0.93850 0.99461 1.21411 0.98911 1.00527 0.94484 1.21421 0.97888 0.95971 0.99077 1.21183 1.00778 0.93948 0.98435 1.21520 1.00252 0.94925 0.96965 1.21445 0.99718 0.95114 0.97134 1.21401 0.88551 0.97566 0.93966 1.60150 1.05110 1.06096 1.56282 1.21309 0.93209 0.96877 0.88694 1.19202 0.91146 0.96806 0.89513 1.20357 1.07821 1.29504 0.95596 0.94698 1.25226 0.94898 0.94671 0.99922 1.69941 1.12184 1.35608 1.33268 0.85991 0.78059 0.77586 0.81920 1.20686 1.21179 1.20793 1.22964 1.03803 0.94285 1.03824 1.22859 1.03035 0.92721 1.05201 1.22202 1.01821 0.95789 0.98361 1.21479 0.99527 0.94965 0.97247 0.92645 0.91712 0.91359 0.86200 0.85108 0.84330 0.84150 0.85116 0.91817 0.93031 0.90583 0.94016 0.93110 0.86123 1.00573 0.89580 0.93809 0.91362 0.90732 0.90266 0.91166 0.93574 0.89973 0.90873 0.93919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 7.59 71.98 0.55 -2.15 16 2 C -0.01 -0.26 0.60 -52.93 -0.03 -0.29 16 3 C -0.07 -1.76 4.76 -19.87 -0.09 -1.85 16 4 C -0.14 -3.47 8.98 22.27 0.20 -3.27 16 5 C -0.13 -2.86 10.05 22.27 0.22 -2.64 16 6 C -0.14 -2.62 10.05 22.27 0.22 -2.40 16 7 C -0.13 -2.38 10.05 22.27 0.22 -2.16 16 8 C -0.13 -2.65 8.71 22.27 0.19 -2.45 16 9 C -0.10 -2.81 3.14 30.59 0.10 -2.72 16 10 C -0.10 -3.00 5.36 30.60 0.16 -2.83 16 11 C 0.10 3.34 2.86 44.92 0.13 3.47 16 12 N -0.65 -27.13 5.19 -491.55 -2.55 -29.68 16 13 C 0.13 5.96 4.40 86.30 0.38 6.34 16 14 C 0.03 1.69 2.15 -52.93 -0.11 1.57 16 15 C -0.50 -27.25 8.74 25.60 0.22 -27.02 16 16 H 0.03 1.97 7.82 -2.91 -0.02 1.95 16 17 C 0.06 2.98 5.31 84.65 0.45 3.43 16 18 N -0.87 -47.48 10.11 21.45 0.22 -47.27 16 19 Si 0.94 44.08 29.54 68.60 2.03 46.11 16 20 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 21 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 22 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 23 C -0.21 -9.61 9.96 30.62 0.30 -9.30 16 24 C -0.20 -8.80 9.92 30.62 0.30 -8.50 16 25 C -0.14 -4.02 5.20 30.59 0.16 -3.86 16 26 C -0.09 -2.47 4.29 30.60 0.13 -2.33 16 27 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.06 1.13 7.39 -2.39 -0.02 1.11 16 29 H 0.07 1.35 4.81 -2.39 -0.01 1.34 16 30 H 0.12 3.12 5.89 -2.91 -0.02 3.10 16 31 H 0.13 2.42 8.06 -2.91 -0.02 2.40 16 32 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 33 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 34 H 0.13 2.33 7.10 -2.91 -0.02 2.31 16 35 H 0.06 1.67 7.50 -2.39 -0.02 1.66 16 36 H 0.05 1.73 6.47 -2.39 -0.02 1.72 16 37 H 0.08 1.99 6.43 -2.39 -0.02 1.97 16 38 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.05 2.00 7.80 -2.39 -0.02 1.98 16 40 H 0.32 13.18 5.48 -89.68 -0.49 12.69 16 41 H -0.02 -1.04 7.24 -2.38 -0.02 -1.05 16 42 H 0.09 4.52 5.74 -2.39 -0.01 4.51 16 43 H 0.25 13.40 8.32 -92.71 -0.77 12.63 16 44 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 45 H 0.07 3.16 8.14 -2.38 -0.02 3.14 16 46 H 0.08 3.16 8.14 -2.38 -0.02 3.14 16 47 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 48 H 0.05 1.41 7.27 -2.39 -0.02 1.39 16 49 H 0.08 1.96 6.43 -2.39 -0.02 1.95 16 50 H 0.07 1.66 7.39 -2.39 -0.02 1.64 16 51 H 0.04 1.32 6.31 -2.39 -0.02 1.31 16 Total: -1.00 -57.63 376.69 3.82 -53.81 By element: Atomic # 1 Polarization: 35.57 SS G_CDS: 0.42 Total: 35.99 kcal Atomic # 6 Polarization: -62.68 SS G_CDS: 3.71 Total: -58.96 kcal Atomic # 7 Polarization: -74.61 SS G_CDS: -2.33 Total: -76.95 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -57.63 3.82 -53.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430743682.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.976 kcal (2) G-P(sol) polarization free energy of solvation -57.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds