Wall clock time and date at job start Tue Mar 31 2020 11:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.50551 * 2 1 4 4 C 1.53098 * 109.50392 * 239.91635 * 2 1 3 5 5 N 1.47015 * 109.25642 * 183.21512 * 4 2 1 6 6 C 1.46900 * 111.00039 * 182.39191 * 5 4 2 7 7 C 1.52999 * 109.47216 * 170.00395 * 6 5 4 8 8 N 1.46500 * 109.47235 * 180.02562 * 7 6 5 9 9 C 1.46506 * 119.99600 * 269.99306 * 8 7 6 10 10 C 1.34773 * 120.00431 * 89.99765 * 8 7 6 11 11 O 1.21593 * 119.99894 * 359.97438 * 10 8 7 12 12 N 1.34777 * 120.00097 * 179.72742 * 10 8 7 13 13 C 1.46504 * 119.99854 * 180.27545 * 12 10 8 14 14 C 1.53004 * 109.46928 * 179.97438 * 13 12 10 15 15 C 1.50699 * 109.46843 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99981 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99570 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99769 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 120.00300 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47112 * 90.00199 * 19 17 15 21 21 H 1.48499 * 109.47134 * 210.00310 * 19 17 15 22 22 H 1.48498 * 109.47011 * 329.99931 * 19 17 15 23 23 C 1.47024 * 110.75375 * 58.61503 * 5 4 2 24 24 C 1.53100 * 109.25333 * 301.38665 * 23 5 4 25 25 H 1.09002 * 109.50442 * 296.91017 * 24 23 5 26 26 C 1.53000 * 109.49958 * 176.78176 * 24 23 5 27 27 O 1.43009 * 109.26106 * 56.84895 * 24 23 5 28 28 H 1.09001 * 109.47107 * 180.08328 * 1 2 3 29 29 H 1.08997 * 109.46992 * 300.08300 * 1 2 3 30 30 H 1.08998 * 109.46966 * 60.08681 * 1 2 3 31 31 H 1.08995 * 109.51082 * 63.28245 * 4 2 1 32 32 H 1.08998 * 109.50764 * 303.14956 * 4 2 1 33 33 H 1.08994 * 109.47531 * 49.99985 * 6 5 4 34 34 H 1.09001 * 109.47225 * 289.99599 * 6 5 4 35 35 H 1.08999 * 109.47644 * 59.99229 * 7 6 5 36 36 H 1.09006 * 109.46811 * 299.99884 * 7 6 5 37 37 H 1.08994 * 109.47014 * 270.00064 * 9 8 7 38 38 H 1.09003 * 109.47017 * 30.00282 * 9 8 7 39 39 H 1.09002 * 109.46900 * 149.99874 * 9 8 7 40 40 H 0.97000 * 119.99736 * 0.26819 * 12 10 8 41 41 H 1.08998 * 109.46968 * 299.99782 * 13 12 10 42 42 H 1.08997 * 109.47198 * 59.99605 * 13 12 10 43 43 H 1.09007 * 109.46621 * 299.99773 * 14 13 12 44 44 H 1.08997 * 109.46991 * 59.99522 * 14 13 12 45 45 H 0.97005 * 120.00032 * 179.97438 * 18 17 15 46 46 H 1.08999 * 109.50508 * 61.31707 * 23 5 4 47 47 H 1.08994 * 109.50570 * 181.44644 * 23 5 4 48 48 H 1.08995 * 109.47482 * 300.21523 * 26 24 23 49 49 H 1.09002 * 109.47167 * 60.21609 * 26 24 23 50 50 H 1.09004 * 109.46850 * 180.21069 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0412 -0.7234 -1.2487 5 7 3.5092 -0.7879 -1.2048 6 6 4.0446 -1.4258 -2.4150 7 6 5.5644 -1.2538 -2.4525 8 7 6.0982 -1.8894 -3.6597 9 6 6.5043 -3.2967 -3.6279 10 6 6.2158 -1.1796 -4.7993 11 8 5.8784 -0.0117 -4.8257 12 7 6.7120 -1.7630 -5.9083 13 6 6.8455 -0.9897 -7.1455 14 6 7.4300 -1.8808 -8.2433 15 6 7.5679 -1.0852 -9.5157 16 1 7.2682 -0.0479 -9.5391 17 6 8.0766 -1.6817 -10.6499 18 7 8.1965 -0.9875 -11.7605 19 14 8.5956 -3.4757 -10.6092 20 1 7.4406 -4.3336 -10.9770 21 1 9.7015 -3.6931 -11.5761 22 1 9.0573 -3.8265 -9.2421 23 6 3.9640 -1.4884 0.0052 24 6 3.4334 -0.7573 1.2412 25 1 3.8534 0.2479 1.2777 26 6 3.8358 -1.5262 2.5013 27 8 2.0076 -0.6767 1.1659 28 1 -0.3633 -1.0277 0.0015 29 1 -0.3633 0.5151 0.8892 30 1 -0.3633 0.5125 -0.8908 31 1 1.7273 -0.1786 -2.1391 32 1 1.6331 -1.7337 -1.2767 33 1 3.6043 -0.9599 -3.2965 34 1 3.7994 -2.4879 -2.4047 35 1 6.0047 -1.7197 -1.5710 36 1 5.8096 -0.1917 -2.4628 37 1 7.5552 -3.3653 -3.3475 38 1 5.8977 -3.8335 -2.8985 39 1 6.3618 -3.7383 -4.6143 40 1 6.9809 -2.6947 -5.8873 41 1 5.8653 -0.6271 -7.4548 42 1 7.5091 -0.1421 -6.9744 43 1 8.4104 -2.2431 -7.9337 44 1 6.7668 -2.7287 -8.4145 45 1 8.5547 -1.4070 -12.5584 46 1 3.5866 -2.5110 -0.0028 47 1 5.0536 -1.5021 0.0300 48 1 3.4170 -2.5317 2.4627 49 1 4.9226 -1.5872 2.5582 50 1 3.4546 -1.0072 3.3808 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000434386100.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:20 Heat of formation + Delta-G solvation = -70.631933 kcal Electronic energy + Delta-G solvation = -26500.165173 eV Core-core repulsion = 22755.622506 eV Total energy + Delta-G solvation = -3744.542668 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.31724 -39.78591 -36.77915 -35.23143 -34.90543 -34.09155 -32.79866 -31.09869 -30.22329 -29.11519 -27.13496 -26.75916 -25.39473 -24.05566 -22.39978 -21.81848 -20.79593 -20.71614 -19.64420 -17.87183 -17.00838 -16.92038 -16.70096 -16.07893 -15.76920 -15.63827 -15.19925 -14.72700 -14.35577 -14.18393 -13.97820 -13.87196 -13.55185 -13.28199 -13.24065 -12.98639 -12.90469 -12.66055 -12.52749 -12.52301 -12.37621 -12.33222 -12.11786 -11.68345 -11.45488 -11.33552 -11.20246 -11.03486 -10.75113 -10.39120 -10.24696 -9.97540 -9.90114 -9.73311 -9.32230 -8.86143 -8.69956 -8.61812 -8.33125 -6.10761 -4.10656 2.71845 3.24538 3.29262 3.32042 3.33403 3.42613 3.58352 4.23472 4.35382 4.37484 4.53077 4.56196 4.73753 4.77572 4.82628 4.91822 4.96961 5.01935 5.08196 5.16436 5.18468 5.22002 5.24782 5.26945 5.31345 5.38674 5.48609 5.54594 5.56520 5.66293 5.70665 5.72925 5.80907 5.87849 6.07372 6.25296 6.43599 6.58659 6.60469 6.66490 6.81866 6.91102 7.00312 7.23651 7.25698 7.67662 8.21392 8.45609 8.87857 8.94363 9.49287 11.02273 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.027776 B = 0.002146 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.820023 B =13042.254504 C =13547.803181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.090 3.910 3 H 0.068 0.932 4 C 0.025 3.975 5 N -0.534 5.534 6 C 0.042 3.958 7 C 0.140 3.860 8 N -0.639 5.639 9 C 0.080 3.920 10 C 0.700 3.300 11 O -0.588 6.588 12 N -0.742 5.742 13 C 0.147 3.853 14 C -0.021 4.021 15 C -0.521 4.521 16 H 0.076 0.924 17 C 0.068 3.932 18 N -0.898 5.898 19 Si 0.882 3.118 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.267 1.267 23 C 0.020 3.980 24 C 0.090 3.910 25 H 0.068 0.932 26 C -0.144 4.144 27 O -0.382 6.382 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.042 0.958 33 H 0.083 0.917 34 H 0.033 0.967 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.055 0.945 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.391 0.609 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.021 0.979 44 H 0.016 0.984 45 H 0.264 0.736 46 H 0.042 0.958 47 H 0.087 0.913 48 H 0.061 0.939 49 H 0.073 0.927 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.482 -5.384 28.739 31.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.033 3.967 3 H 0.086 0.914 4 C -0.103 4.103 5 N -0.259 5.259 6 C -0.087 4.087 7 C 0.016 3.984 8 N -0.378 5.378 9 C -0.063 4.063 10 C 0.401 3.599 11 O -0.466 6.466 12 N -0.397 5.397 13 C 0.024 3.976 14 C -0.059 4.059 15 C -0.560 4.560 16 H 0.094 0.906 17 C -0.134 4.134 18 N -0.537 5.537 19 Si 0.710 3.290 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.191 1.191 23 C -0.108 4.108 24 C 0.032 3.968 25 H 0.086 0.914 26 C -0.202 4.202 27 O -0.301 6.301 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.060 0.940 33 H 0.102 0.898 34 H 0.052 0.948 35 H 0.089 0.911 36 H 0.112 0.888 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.226 0.774 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.039 0.961 44 H 0.034 0.966 45 H 0.074 0.926 46 H 0.060 0.940 47 H 0.106 0.894 48 H 0.081 0.919 49 H 0.092 0.908 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.592 -4.114 28.627 30.800 hybrid contribution 0.317 -2.308 -0.495 2.382 sum -10.274 -6.422 28.132 30.631 Atomic orbital electron populations 1.21749 0.92717 1.02931 1.02788 1.22140 0.94790 0.95735 0.84083 0.91385 1.22821 0.87559 1.00252 0.99655 1.62099 1.08939 1.52819 1.02020 1.22533 0.96603 0.96849 0.92714 1.21153 0.91687 1.00274 0.85253 1.46999 1.68735 1.11565 1.10545 1.21698 1.00147 0.81775 1.02711 1.15986 0.78922 0.84797 0.80186 1.90914 1.56557 1.15113 1.83967 1.45680 1.67879 1.15178 1.10930 1.21386 1.00931 0.94475 0.80770 1.19794 0.95891 0.95898 0.94325 1.20916 1.42960 0.99314 0.92789 0.90559 1.25006 0.95054 0.97999 0.95292 1.69906 1.45734 1.36721 1.01290 0.86746 0.78575 0.85565 0.78141 1.20266 1.21277 1.19129 1.22913 1.01274 0.96173 0.90473 1.22135 0.81317 0.99191 0.94188 0.91432 1.21747 1.01443 1.00646 0.96332 1.87971 1.20894 1.78433 1.42842 0.91938 0.91529 0.90761 0.89400 0.94007 0.89824 0.94834 0.91085 0.88813 0.92618 0.91327 0.91297 0.77430 0.92171 0.92093 0.96065 0.96556 0.92566 0.93996 0.89426 0.91944 0.90845 0.91533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.57 37.16 0.36 -0.63 16 2 C 0.09 0.79 3.43 -26.68 -0.09 0.70 16 3 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 4 C 0.03 0.24 4.93 -3.71 -0.02 0.22 16 5 N -0.53 -5.34 4.73 -234.31 -1.11 -6.45 16 6 C 0.04 0.45 5.28 -3.82 -0.02 0.43 16 7 C 0.14 1.57 5.34 -4.04 -0.02 1.55 16 8 N -0.64 -8.11 2.87 -187.34 -0.54 -8.65 16 9 C 0.08 0.71 10.20 59.85 0.61 1.32 16 10 C 0.70 12.09 8.28 -86.92 -0.72 11.37 16 11 O -0.59 -12.49 15.92 5.28 0.08 -12.41 16 12 N -0.74 -12.70 5.42 -65.22 -0.35 -13.05 16 13 C 0.15 3.07 5.61 -4.04 -0.02 3.05 16 14 C -0.02 -0.49 4.16 -27.88 -0.12 -0.60 16 15 C -0.52 -14.66 9.66 -34.44 -0.33 -14.99 16 16 H 0.08 2.33 7.99 -52.49 -0.42 1.91 16 17 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 18 N -0.90 -27.36 13.96 55.43 0.77 -26.59 16 19 Si 0.88 21.01 27.47 -169.99 -4.67 16.34 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 23 C 0.02 0.16 4.72 -3.70 -0.02 0.15 16 24 C 0.09 0.73 3.43 -26.68 -0.09 0.64 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 26 C -0.14 -0.88 9.57 37.16 0.36 -0.52 16 27 O -0.38 -3.74 10.11 -35.23 -0.36 -4.10 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.81 8.09 -51.93 -0.42 0.39 16 32 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 1.11 8.04 -51.93 -0.42 0.69 16 34 H 0.03 0.34 8.12 -51.93 -0.42 -0.08 16 35 H 0.07 0.61 6.45 -51.93 -0.33 0.28 16 36 H 0.09 1.28 7.42 -51.93 -0.39 0.90 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.47 8.07 -51.93 -0.42 0.05 16 39 H 0.07 0.60 6.37 -51.93 -0.33 0.27 16 40 H 0.39 5.61 6.21 -40.82 -0.25 5.36 16 41 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 42 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 43 H 0.02 0.48 7.20 -51.93 -0.37 0.10 16 44 H 0.02 0.36 7.57 -51.93 -0.39 -0.03 16 45 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 46 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.09 0.63 6.38 -51.93 -0.33 0.29 16 48 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 392.93 15.07 5.92 5.92 Total: -1.00 -33.63 392.93 -9.64 -43.27 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -9.16 Total: 1.16 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -0.23 Total: 4.55 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: -1.23 Total: -54.74 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.27 Total: -16.51 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.67 Total: 16.34 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.63 -9.64 -43.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000434386100.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.362 kcal (2) G-P(sol) polarization free energy of solvation -33.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds