Wall clock time and date at job start Tue Mar 31 2020 11:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.50551 * 2 1 4 4 C 1.53098 * 109.50392 * 239.91635 * 2 1 3 5 5 N 1.47015 * 109.25642 * 183.21512 * 4 2 1 6 6 C 1.46900 * 111.00039 * 182.39191 * 5 4 2 7 7 C 1.52999 * 109.47216 * 170.00395 * 6 5 4 8 8 N 1.46500 * 109.47235 * 180.02562 * 7 6 5 9 9 C 1.46506 * 119.99600 * 269.99306 * 8 7 6 10 10 C 1.34773 * 120.00431 * 89.99765 * 8 7 6 11 11 O 1.21593 * 119.99894 * 359.97438 * 10 8 7 12 12 N 1.34777 * 120.00097 * 179.72742 * 10 8 7 13 13 C 1.46504 * 119.99854 * 180.27545 * 12 10 8 14 14 C 1.53004 * 109.46928 * 179.97438 * 13 12 10 15 15 C 1.50699 * 109.46843 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99981 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99570 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99769 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 120.00300 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47112 * 90.00199 * 19 17 15 21 21 H 1.48499 * 109.47134 * 210.00310 * 19 17 15 22 22 H 1.48498 * 109.47011 * 329.99931 * 19 17 15 23 23 C 1.47024 * 110.75375 * 58.61503 * 5 4 2 24 24 C 1.53100 * 109.25333 * 301.38665 * 23 5 4 25 25 H 1.09002 * 109.50442 * 296.91017 * 24 23 5 26 26 C 1.53000 * 109.49958 * 176.78176 * 24 23 5 27 27 O 1.43009 * 109.26106 * 56.84895 * 24 23 5 28 28 H 1.09001 * 109.47107 * 180.08328 * 1 2 3 29 29 H 1.08997 * 109.46992 * 300.08300 * 1 2 3 30 30 H 1.08998 * 109.46966 * 60.08681 * 1 2 3 31 31 H 1.08995 * 109.51082 * 63.28245 * 4 2 1 32 32 H 1.08998 * 109.50764 * 303.14956 * 4 2 1 33 33 H 1.08994 * 109.47531 * 49.99985 * 6 5 4 34 34 H 1.09001 * 109.47225 * 289.99599 * 6 5 4 35 35 H 1.08999 * 109.47644 * 59.99229 * 7 6 5 36 36 H 1.09006 * 109.46811 * 299.99884 * 7 6 5 37 37 H 1.08994 * 109.47014 * 270.00064 * 9 8 7 38 38 H 1.09003 * 109.47017 * 30.00282 * 9 8 7 39 39 H 1.09002 * 109.46900 * 149.99874 * 9 8 7 40 40 H 0.97000 * 119.99736 * 0.26819 * 12 10 8 41 41 H 1.08998 * 109.46968 * 299.99782 * 13 12 10 42 42 H 1.08997 * 109.47198 * 59.99605 * 13 12 10 43 43 H 1.09007 * 109.46621 * 299.99773 * 14 13 12 44 44 H 1.08997 * 109.46991 * 59.99522 * 14 13 12 45 45 H 0.97005 * 120.00032 * 179.97438 * 18 17 15 46 46 H 1.08999 * 109.50508 * 61.31707 * 23 5 4 47 47 H 1.08994 * 109.50570 * 181.44644 * 23 5 4 48 48 H 1.08995 * 109.47482 * 300.21523 * 26 24 23 49 49 H 1.09002 * 109.47167 * 60.21609 * 26 24 23 50 50 H 1.09004 * 109.46850 * 180.21069 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0412 -0.7234 -1.2487 5 7 3.5092 -0.7879 -1.2048 6 6 4.0446 -1.4258 -2.4150 7 6 5.5644 -1.2538 -2.4525 8 7 6.0982 -1.8894 -3.6597 9 6 6.5043 -3.2967 -3.6279 10 6 6.2158 -1.1796 -4.7993 11 8 5.8784 -0.0117 -4.8257 12 7 6.7120 -1.7630 -5.9083 13 6 6.8455 -0.9897 -7.1455 14 6 7.4300 -1.8808 -8.2433 15 6 7.5679 -1.0852 -9.5157 16 1 7.2682 -0.0479 -9.5391 17 6 8.0766 -1.6817 -10.6499 18 7 8.1965 -0.9875 -11.7605 19 14 8.5956 -3.4757 -10.6092 20 1 7.4406 -4.3336 -10.9770 21 1 9.7015 -3.6931 -11.5761 22 1 9.0573 -3.8265 -9.2421 23 6 3.9640 -1.4884 0.0052 24 6 3.4334 -0.7573 1.2412 25 1 3.8534 0.2479 1.2777 26 6 3.8358 -1.5262 2.5013 27 8 2.0076 -0.6767 1.1659 28 1 -0.3633 -1.0277 0.0015 29 1 -0.3633 0.5151 0.8892 30 1 -0.3633 0.5125 -0.8908 31 1 1.7273 -0.1786 -2.1391 32 1 1.6331 -1.7337 -1.2767 33 1 3.6043 -0.9599 -3.2965 34 1 3.7994 -2.4879 -2.4047 35 1 6.0047 -1.7197 -1.5710 36 1 5.8096 -0.1917 -2.4628 37 1 7.5552 -3.3653 -3.3475 38 1 5.8977 -3.8335 -2.8985 39 1 6.3618 -3.7383 -4.6143 40 1 6.9809 -2.6947 -5.8873 41 1 5.8653 -0.6271 -7.4548 42 1 7.5091 -0.1421 -6.9744 43 1 8.4104 -2.2431 -7.9337 44 1 6.7668 -2.7287 -8.4145 45 1 8.5547 -1.4070 -12.5584 46 1 3.5866 -2.5110 -0.0028 47 1 5.0536 -1.5021 0.0300 48 1 3.4170 -2.5317 2.4627 49 1 4.9226 -1.5872 2.5582 50 1 3.4546 -1.0072 3.3808 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000434386100.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:20 Heat of formation + Delta-G solvation = -95.321907 kcal Electronic energy + Delta-G solvation = -26501.235811 eV Core-core repulsion = 22755.622506 eV Total energy + Delta-G solvation = -3745.613305 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.34149 -40.75471 -37.74626 -36.61022 -36.16823 -34.78758 -34.69050 -32.30263 -31.43218 -30.06520 -27.78126 -27.67136 -26.84630 -25.27817 -23.06144 -22.86490 -22.46222 -21.41210 -20.94006 -19.08592 -18.95822 -17.74080 -17.57887 -17.07146 -16.79720 -16.60569 -16.25155 -16.06936 -15.71408 -15.36028 -15.14613 -15.08556 -14.65840 -14.50767 -14.17258 -14.08643 -13.84386 -13.52746 -13.44109 -13.26969 -13.11410 -13.03610 -13.01188 -12.84817 -12.77760 -12.43197 -12.17397 -12.15138 -11.96053 -11.84124 -11.75511 -11.52230 -11.43415 -11.22659 -10.78431 -10.60986 -10.19504 -9.60764 -9.41165 -8.29353 -6.36790 1.39209 1.42347 1.53550 1.60010 2.11001 2.37448 2.63701 2.75235 3.05403 3.10467 3.67506 3.81570 3.86175 3.99173 4.08652 4.15461 4.20700 4.24562 4.32173 4.34452 4.43107 4.44176 4.47917 4.59787 4.63496 4.63888 4.65852 4.74976 4.75946 4.78315 4.87305 4.93531 4.96995 5.01374 5.12131 5.14499 5.21093 5.29865 5.40910 5.43787 5.51461 5.66575 5.82715 5.85596 5.97635 6.23435 6.25476 6.70167 6.98417 7.27447 7.55700 8.87418 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.027776 B = 0.002146 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.820023 B =13042.254504 C =13547.803181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.089 3.911 3 H 0.061 0.939 4 C 0.027 3.973 5 N -0.547 5.547 6 C 0.053 3.947 7 C 0.142 3.858 8 N -0.630 5.630 9 C 0.072 3.928 10 C 0.695 3.305 11 O -0.637 6.637 12 N -0.732 5.732 13 C 0.164 3.836 14 C -0.010 4.010 15 C -0.539 4.539 16 H 0.028 0.972 17 C 0.002 3.998 18 N -0.950 5.950 19 Si 0.961 3.039 20 H -0.265 1.265 21 H -0.287 1.287 22 H -0.236 1.236 23 C 0.023 3.977 24 C 0.084 3.916 25 H 0.061 0.939 26 C -0.139 4.139 27 O -0.395 6.395 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.041 0.959 33 H 0.052 0.948 34 H 0.047 0.953 35 H 0.107 0.893 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.072 0.928 40 H 0.408 0.592 41 H 0.039 0.961 42 H 0.040 0.960 43 H 0.037 0.963 44 H 0.035 0.965 45 H 0.268 0.732 46 H 0.044 0.956 47 H 0.103 0.897 48 H 0.061 0.939 49 H 0.091 0.909 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.929 -8.903 31.098 33.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.032 3.968 3 H 0.079 0.921 4 C -0.101 4.101 5 N -0.272 5.272 6 C -0.076 4.076 7 C 0.019 3.981 8 N -0.367 5.367 9 C -0.070 4.070 10 C 0.396 3.604 11 O -0.518 6.518 12 N -0.389 5.389 13 C 0.039 3.961 14 C -0.048 4.048 15 C -0.577 4.577 16 H 0.046 0.954 17 C -0.195 4.195 18 N -0.590 5.590 19 Si 0.783 3.217 20 H -0.190 1.190 21 H -0.213 1.213 22 H -0.159 1.159 23 C -0.105 4.105 24 C 0.026 3.974 25 H 0.079 0.921 26 C -0.196 4.196 27 O -0.315 6.315 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.125 0.875 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.116 0.884 39 H 0.091 0.909 40 H 0.246 0.754 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.054 0.946 45 H 0.077 0.923 46 H 0.062 0.938 47 H 0.121 0.879 48 H 0.080 0.920 49 H 0.110 0.890 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.043 -7.684 31.056 33.531 hybrid contribution 0.108 -1.103 -1.186 1.623 sum -9.935 -8.786 29.870 32.682 Atomic orbital electron populations 1.21742 0.91380 1.03132 1.03510 1.22192 0.95881 0.95138 0.83632 0.92116 1.22810 0.87320 1.00202 0.99796 1.62089 1.09334 1.53380 1.02380 1.22322 0.96053 0.97184 0.92027 1.21234 0.92148 0.99013 0.85720 1.47031 1.67520 1.12982 1.09161 1.22027 1.01777 0.79164 1.04041 1.16178 0.78607 0.84438 0.81183 1.90885 1.58461 1.17540 1.84916 1.45283 1.68174 1.15664 1.09729 1.20876 0.99142 0.93999 0.82055 1.19633 0.97134 0.95762 0.92268 1.21240 1.42898 0.98019 0.95578 0.95381 1.26110 0.94877 1.04028 0.94464 1.70082 1.47115 1.39468 1.02374 0.85514 0.78375 0.78128 0.79700 1.18973 1.21270 1.15854 1.22964 1.02102 0.95966 0.89483 1.22300 0.80598 0.99297 0.95193 0.92057 1.21743 1.02630 1.00146 0.95102 1.87964 1.21926 1.78498 1.43159 0.91943 0.91165 0.89707 0.89946 0.94040 0.92960 0.93510 0.87466 0.91739 0.90895 0.88423 0.90895 0.75364 0.94227 0.94169 0.94443 0.94634 0.92336 0.93751 0.87932 0.91953 0.88982 0.91581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.57 71.98 0.69 -1.13 16 2 C 0.09 1.52 3.43 30.63 0.10 1.63 16 3 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 4 C 0.03 0.49 4.93 86.31 0.43 0.92 16 5 N -0.55 -10.47 4.73 -895.21 -4.23 -14.70 16 6 C 0.05 1.10 5.28 86.30 0.46 1.55 16 7 C 0.14 2.95 5.34 86.38 0.46 3.42 16 8 N -0.63 -14.64 2.87 -864.89 -2.49 -17.12 16 9 C 0.07 0.97 10.20 127.77 1.30 2.28 16 10 C 0.69 23.60 8.28 179.06 1.48 25.08 16 11 O -0.64 -27.87 15.92 -4.01 -0.06 -27.93 16 12 N -0.73 -24.08 5.42 -478.52 -2.59 -26.68 16 13 C 0.16 6.91 5.61 86.38 0.48 7.40 16 14 C -0.01 -0.45 4.16 29.85 0.12 -0.33 16 15 C -0.54 -31.00 9.66 25.60 0.25 -30.75 16 16 H 0.03 1.81 7.99 -2.91 -0.02 1.79 16 17 C 0.00 0.13 5.47 84.65 0.46 0.59 16 18 N -0.95 -59.44 13.96 21.45 0.30 -59.15 16 19 Si 0.96 42.10 27.47 68.60 1.88 43.99 16 20 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 21 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 22 H -0.24 -9.10 6.54 99.48 0.65 -8.45 16 23 C 0.02 0.33 4.72 86.31 0.41 0.73 16 24 C 0.08 1.25 3.43 30.63 0.10 1.35 16 25 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 26 C -0.14 -1.40 9.57 71.98 0.69 -0.71 16 27 O -0.40 -7.39 10.11 -148.98 -1.51 -8.89 16 28 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.08 1.55 8.09 -2.39 -0.02 1.53 16 32 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.05 1.41 8.04 -2.39 -0.02 1.39 16 34 H 0.05 0.84 8.12 -2.39 -0.02 0.82 16 35 H 0.11 1.46 6.45 -2.39 -0.02 1.45 16 36 H 0.06 1.76 7.42 -2.38 -0.02 1.74 16 37 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.10 0.82 8.07 -2.39 -0.02 0.80 16 39 H 0.07 0.96 6.37 -2.39 -0.02 0.95 16 40 H 0.41 10.47 6.21 -92.71 -0.58 9.90 16 41 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.04 1.57 7.20 -2.38 -0.02 1.55 16 44 H 0.04 1.47 7.57 -2.39 -0.02 1.45 16 45 H 0.27 15.52 8.31 -92.70 -0.77 14.75 16 46 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.10 1.14 6.38 -2.39 -0.02 1.13 16 48 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 49 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 50 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -76.67 392.93 -0.99 -77.66 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: 0.27 Total: 20.78 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: 7.44 Total: 12.04 kcal Atomic # 7 Polarization: -108.63 SS G_CDS: -9.01 Total: -117.64 kcal Atomic # 8 Polarization: -35.25 SS G_CDS: -1.57 Total: -36.82 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 1.88 Total: 43.99 kcal Total: -76.67 -0.99 -77.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000434386100.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.660 kcal (2) G-P(sol) polarization free energy of solvation -76.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds