Wall clock time and date at job start Tue Mar 31 2020 10:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50705 * 110.01533 * 2 1 4 4 C 1.38228 * 120.00102 * 353.69710 * 3 2 1 5 5 C 1.38236 * 120.00323 * 179.78878 * 4 3 2 6 6 C 1.38236 * 119.99392 * 0.45661 * 5 4 3 7 7 C 1.38233 * 120.00322 * 359.76960 * 6 5 4 8 8 C 1.38232 * 119.99882 * 0.02562 * 7 6 5 9 9 C 1.54264 * 110.03361 * 238.61102 * 2 1 3 10 10 C 1.54895 * 104.19411 * 264.27444 * 9 2 1 11 11 C 1.54893 * 102.74965 * 322.05792 * 10 9 2 12 12 H 1.08998 * 110.49020 * 279.26376 * 11 10 9 13 13 N 1.46902 * 110.48454 * 156.74828 * 11 10 9 14 14 C 1.46905 * 110.99809 * 187.19638 * 13 11 10 15 15 C 1.50701 * 109.47214 * 300.95865 * 14 13 11 16 16 H 1.08003 * 119.99652 * 4.03582 * 15 14 13 17 17 C 1.37876 * 119.99907 * 184.03692 * 15 14 13 18 18 N 1.31509 * 119.99775 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99986 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47372 * 89.99776 * 19 17 15 21 21 H 1.48493 * 109.47305 * 210.00053 * 19 17 15 22 22 H 1.48504 * 109.46962 * 329.99921 * 19 17 15 23 23 C 1.46897 * 110.99839 * 63.24813 * 13 11 10 24 24 C 1.52999 * 109.47375 * 196.25270 * 23 13 11 25 25 C 1.52999 * 117.49911 * 244.09671 * 24 23 13 26 26 C 1.52996 * 117.50294 * 175.47154 * 24 23 13 27 27 C 1.53870 * 110.07239 * 121.41572 * 2 1 3 28 28 H 1.08997 * 109.47332 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47320 * 299.93759 * 1 2 3 30 30 H 1.09000 * 109.47027 * 59.93853 * 1 2 3 31 31 H 1.08005 * 120.00068 * 359.97438 * 4 3 2 32 32 H 1.08004 * 120.00303 * 180.24696 * 5 4 3 33 33 H 1.08001 * 119.99560 * 179.78930 * 6 5 4 34 34 H 1.08000 * 120.00070 * 179.97438 * 7 6 5 35 35 H 1.08004 * 119.99934 * 179.97438 * 8 7 6 36 36 H 1.09003 * 110.48833 * 145.60071 * 9 2 1 37 37 H 1.08993 * 110.48804 * 22.95534 * 9 2 1 38 38 H 1.08998 * 110.75696 * 203.74376 * 10 9 2 39 39 H 1.08997 * 110.91411 * 80.44601 * 10 9 2 40 40 H 1.09001 * 109.46744 * 60.95613 * 14 13 11 41 41 H 1.09000 * 109.47025 * 180.95637 * 14 13 11 42 42 H 0.97007 * 119.99854 * 179.97438 * 18 17 15 43 43 H 1.09007 * 109.47181 * 316.25134 * 23 13 11 44 44 H 1.09000 * 109.47510 * 76.24826 * 23 13 11 45 45 H 1.09008 * 115.54357 * 29.79933 * 24 23 13 46 46 H 1.08995 * 117.49936 * 359.97438 * 25 24 23 47 47 H 1.08998 * 117.49528 * 145.01952 * 25 24 23 48 48 H 1.09006 * 117.50021 * 214.98289 * 26 24 23 49 49 H 1.09003 * 117.49681 * 359.97438 * 26 24 23 50 50 H 1.09004 * 110.03423 * 0.02562 * 27 2 1 51 51 H 1.09005 * 110.03472 * 238.59712 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0458 1.4160 0.0000 4 6 1.1644 2.4727 -0.1314 5 6 1.6370 3.7717 -0.1270 6 6 2.9922 4.0136 -0.0007 7 6 3.8741 2.9568 0.1260 8 6 3.4010 1.6580 0.1259 9 6 2.0584 -0.7549 -1.2372 10 6 2.3293 -2.1895 -0.7198 11 6 2.8891 -1.9398 0.7027 12 1 3.9454 -1.6751 0.6560 13 7 2.6944 -3.1259 1.5473 14 6 3.0640 -2.8459 2.9413 15 6 4.5076 -2.4175 3.0019 16 1 5.0735 -2.2961 2.0901 17 6 5.1057 -2.1806 4.2214 18 7 4.4163 -2.3281 5.3315 19 14 6.8948 -1.6489 4.2965 20 1 6.9731 -0.1667 4.2500 21 1 7.5038 -2.1374 5.5597 22 1 7.6299 -2.2200 3.1394 23 6 3.4464 -4.2741 1.0238 24 6 2.9201 -5.5618 1.6607 25 6 3.8809 -6.3542 2.5495 26 6 3.5051 -6.8856 1.1648 27 6 2.0581 -0.7533 1.2334 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5128 0.8905 30 1 -0.3633 0.5148 -0.8894 31 1 0.1060 2.2835 -0.2345 32 1 0.9479 4.5975 -0.2257 33 1 3.3618 5.0284 -0.0007 34 1 4.9329 3.1458 0.2243 35 1 4.0901 0.8322 0.2245 36 1 2.9807 -0.2988 -1.5973 37 1 1.3059 -0.7694 -2.0255 38 1 3.0689 -2.6918 -1.3433 39 1 1.4065 -2.7679 -0.6757 40 1 2.4317 -2.0485 3.3316 41 1 2.9264 -3.7455 3.5413 42 1 4.8373 -2.1618 6.1896 43 1 3.3226 -4.3268 -0.0580 44 1 4.5033 -4.1559 1.2631 45 1 1.8670 -5.5507 1.9419 46 1 4.8880 -5.9584 2.6801 47 1 3.4599 -6.8647 3.4156 48 1 2.8370 -7.7458 1.1200 49 1 4.2647 -6.8392 0.3844 50 1 1.2244 -1.1197 1.8324 51 1 2.6874 -0.0947 1.8320 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000438122229.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:23 Heat of formation + Delta-G solvation = 38.015468 kcal Electronic energy + Delta-G solvation = -27141.582947 eV Core-core repulsion = 23812.600848 eV Total energy + Delta-G solvation = -3328.982100 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.03776 -38.15845 -36.87452 -34.89609 -32.51569 -31.30423 -30.69997 -28.84057 -28.20125 -27.03934 -25.26545 -24.27765 -22.49657 -22.02523 -21.79418 -21.35639 -19.74401 -19.06953 -18.56038 -16.90206 -16.23982 -15.51508 -15.15788 -15.12123 -14.69438 -14.39905 -14.25191 -13.76958 -13.59736 -13.34522 -13.12790 -12.92975 -12.76961 -12.45734 -12.19765 -11.93460 -11.71635 -11.43480 -11.23905 -11.16717 -11.03585 -10.95701 -10.93207 -10.71065 -10.66175 -10.38448 -10.20038 -10.18075 -10.13203 -9.94448 -9.79756 -9.60067 -9.53258 -9.10222 -8.72526 -8.42505 -8.37884 -7.11821 -5.98689 -4.06389 1.55762 1.58870 3.26976 3.34546 3.36157 3.96175 4.38008 4.42311 4.79378 4.91450 4.93606 5.07346 5.13875 5.19380 5.30005 5.32266 5.41995 5.51682 5.53210 5.63707 5.66345 5.68157 5.70929 5.83592 5.89079 6.02988 6.06230 6.10513 6.15840 6.18186 6.19714 6.25225 6.27431 6.33047 6.35952 6.40656 6.46303 6.50280 6.60038 6.61054 6.68784 6.72751 6.75250 6.91005 6.92599 6.97372 7.04069 7.20575 7.39811 7.59859 7.95856 8.14928 8.34478 8.42058 9.03959 9.59338 11.06192 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.011223 B = 0.004912 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2494.230884 B = 5699.453298 C = 7436.258623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.028 4.028 3 C -0.057 4.057 4 C -0.125 4.125 5 C -0.124 4.124 6 C -0.133 4.133 7 C -0.119 4.119 8 C -0.109 4.109 9 C -0.107 4.107 10 C -0.119 4.119 11 C 0.094 3.906 12 H 0.047 0.953 13 N -0.533 5.533 14 C 0.187 3.813 15 C -0.540 4.540 16 H 0.053 0.947 17 C 0.067 3.933 18 N -0.889 5.889 19 Si 0.880 3.120 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.276 1.276 23 C 0.089 3.911 24 C -0.124 4.124 25 C -0.172 4.172 26 C -0.194 4.194 27 C -0.094 4.094 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.123 0.877 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.125 0.875 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.055 0.945 39 H 0.072 0.928 40 H 0.028 0.972 41 H 0.036 0.964 42 H 0.260 0.740 43 H 0.054 0.946 44 H 0.045 0.955 45 H 0.102 0.898 46 H 0.094 0.906 47 H 0.085 0.915 48 H 0.084 0.916 49 H 0.085 0.915 50 H 0.074 0.926 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.703 4.537 -12.381 14.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.029 4.029 3 C -0.057 4.057 4 C -0.143 4.143 5 C -0.142 4.142 6 C -0.151 4.151 7 C -0.138 4.138 8 C -0.127 4.127 9 C -0.145 4.145 10 C -0.157 4.157 11 C -0.015 4.015 12 H 0.065 0.935 13 N -0.256 5.256 14 C 0.062 3.938 15 C -0.580 4.580 16 H 0.071 0.929 17 C -0.135 4.135 18 N -0.528 5.528 19 Si 0.708 3.292 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.040 4.040 24 C -0.143 4.143 25 C -0.209 4.209 26 C -0.232 4.232 27 C -0.132 4.132 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.141 0.859 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.136 0.864 35 H 0.143 0.857 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.046 0.954 41 H 0.054 0.946 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.064 0.936 45 H 0.120 0.880 46 H 0.112 0.888 47 H 0.103 0.897 48 H 0.103 0.897 49 H 0.104 0.896 50 H 0.092 0.908 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.197 4.430 -12.175 14.361 hybrid contribution 2.094 0.615 0.407 2.220 sum -4.103 5.045 -11.768 13.445 Atomic orbital electron populations 1.21940 0.94262 1.02046 1.01045 1.20187 0.95284 0.90703 0.96694 1.19966 0.93255 0.94903 0.97555 1.21169 0.99785 0.92234 1.01142 1.21075 0.95486 0.96651 1.01023 1.21062 0.93657 0.98669 1.01718 1.21134 0.99571 0.92855 1.00193 1.21123 0.95465 0.96926 0.99218 1.22437 1.00373 0.95664 0.96002 1.22606 1.00999 0.95638 0.96418 1.22193 0.97415 0.90824 0.91083 0.93506 1.62586 1.55125 1.03145 1.04759 1.19752 0.93862 0.97100 0.83130 1.21674 0.97836 1.46310 0.92150 0.92883 1.24895 0.97333 0.95429 0.95836 1.69937 1.36268 1.49091 0.97495 0.86785 0.85984 0.78956 0.77447 1.20696 1.21216 1.20104 1.21491 0.96641 0.89306 0.96534 1.22171 0.98618 0.91074 1.02442 1.22917 1.01113 1.03910 0.92941 1.22921 1.04026 0.97835 0.98379 1.22227 0.99969 0.95848 0.95146 0.91953 0.92556 0.93024 0.85913 0.86644 0.86711 0.86424 0.85746 0.91817 0.91972 0.92593 0.90900 0.95415 0.94618 0.92973 0.92761 0.93635 0.87993 0.88759 0.89689 0.89730 0.89633 0.90767 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 6.81 37.16 0.25 -1.43 16 2 C -0.03 -0.40 0.78 -154.54 -0.12 -0.52 16 3 C -0.06 -0.82 4.68 -104.62 -0.49 -1.31 16 4 C -0.13 -1.63 9.03 -39.59 -0.36 -1.98 16 5 C -0.12 -1.51 10.05 -39.58 -0.40 -1.90 16 6 C -0.13 -1.65 10.05 -39.58 -0.40 -2.04 16 7 C -0.12 -1.63 10.05 -39.59 -0.40 -2.03 16 8 C -0.11 -1.65 8.05 -39.58 -0.32 -1.96 16 9 C -0.11 -1.43 5.83 -25.07 -0.15 -1.58 16 10 C -0.12 -1.76 5.41 -24.73 -0.13 -1.90 16 11 C 0.09 1.72 2.12 -66.05 -0.14 1.58 16 12 H 0.05 0.97 6.58 -51.93 -0.34 0.63 16 13 N -0.53 -10.81 4.50 -226.09 -1.02 -11.83 16 14 C 0.19 4.62 4.70 -4.97 -0.02 4.60 16 15 C -0.54 -14.31 7.46 -34.44 -0.26 -14.57 16 16 H 0.05 1.41 5.97 -52.48 -0.31 1.10 16 17 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 18 N -0.89 -25.81 13.29 55.43 0.74 -25.07 16 19 Si 0.88 21.30 29.54 -169.99 -5.02 16.28 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 C 0.09 1.68 5.01 -3.83 -0.02 1.66 16 24 C -0.12 -2.19 5.06 -90.62 -0.46 -2.65 16 25 C -0.17 -3.00 10.18 -26.73 -0.27 -3.27 16 26 C -0.19 -2.89 10.25 -26.73 -0.27 -3.16 16 27 C -0.09 -1.67 4.21 -25.61 -0.11 -1.77 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.70 7.84 -51.93 -0.41 0.29 16 30 H 0.05 0.55 7.25 -51.93 -0.38 0.18 16 31 H 0.12 1.38 5.97 -52.48 -0.31 1.07 16 32 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 33 H 0.11 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 35 H 0.12 1.97 7.84 -52.48 -0.41 1.55 16 36 H 0.06 0.86 7.33 -51.93 -0.38 0.48 16 37 H 0.06 0.74 7.84 -51.93 -0.41 0.33 16 38 H 0.06 0.80 7.59 -51.93 -0.39 0.40 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.03 0.74 6.83 -51.93 -0.35 0.39 16 41 H 0.04 0.97 7.39 -51.93 -0.38 0.58 16 42 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 43 H 0.05 0.93 6.48 -51.92 -0.34 0.59 16 44 H 0.05 0.98 6.34 -51.93 -0.33 0.65 16 45 H 0.10 1.84 8.14 -51.92 -0.42 1.42 16 46 H 0.09 1.80 8.03 -51.93 -0.42 1.38 16 47 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 48 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 49 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 50 H 0.07 1.40 7.06 -51.93 -0.37 1.03 16 51 H 0.07 1.38 7.02 -51.93 -0.36 1.01 16 LS Contribution 388.52 15.07 5.85 5.85 Total: -1.00 -28.04 388.52 -12.44 -40.48 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -8.84 Total: 6.78 kcal Atomic # 6 Polarization: -28.34 SS G_CDS: -4.16 Total: -32.50 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: -0.28 Total: -36.90 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -28.04 -12.44 -40.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438122229.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.491 kcal (2) G-P(sol) polarization free energy of solvation -28.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds