Wall clock time and date at job start Tue Mar 31 2020 10:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86801 * 119.99964 * 2 1 4 4 H 1.48494 * 109.47618 * 270.00208 * 3 2 1 5 5 H 1.48504 * 109.47077 * 30.00039 * 3 2 1 6 6 H 1.48498 * 109.47384 * 149.99928 * 3 2 1 7 7 C 1.37874 * 120.00457 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00018 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00515 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47146 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46896 * 180.02562 * 10 9 7 12 12 N 1.46902 * 109.47329 * 185.63430 * 11 10 9 13 13 C 1.48943 * 110.99884 * 65.68159 * 12 11 10 14 14 C 1.54435 * 104.77499 * 202.02260 * 13 12 11 15 15 H 1.09002 * 110.33170 * 262.59684 * 14 13 12 16 16 C 1.50700 * 110.33047 * 140.36820 * 14 13 12 17 17 C 1.38236 * 120.00152 * 301.17667 * 16 14 13 18 18 C 1.38235 * 119.99913 * 179.74151 * 17 16 14 19 19 C 1.38234 * 120.00077 * 0.53357 * 18 17 16 20 20 C 1.38234 * 119.99852 * 359.74307 * 19 18 17 21 21 C 1.38234 * 119.99996 * 121.45174 * 16 14 13 22 22 C 1.55222 * 105.02308 * 21.48102 * 14 13 12 23 23 H 1.09004 * 111.12909 * 123.17891 * 22 14 13 24 24 C 1.52896 * 107.11015 * 244.57627 * 22 14 13 25 25 C 1.53202 * 109.56580 * 166.66442 * 24 22 14 26 26 C 1.52703 * 109.06663 * 295.55711 * 25 24 22 27 27 C 1.51511 * 110.69530 * 60.24524 * 26 25 24 28 28 C 1.47891 * 110.99981 * 311.54141 * 12 11 10 29 29 H 1.09005 * 106.70420 * 47.45814 * 28 12 11 30 30 H 0.97001 * 120.00142 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.46715 * 300.00209 * 9 7 2 32 32 H 1.08998 * 109.46473 * 59.99924 * 9 7 2 33 33 H 1.09001 * 109.47555 * 299.99781 * 10 9 7 34 34 H 1.08997 * 109.47009 * 60.00268 * 10 9 7 35 35 H 1.09000 * 109.47663 * 305.63698 * 11 10 9 36 36 H 1.09003 * 109.47516 * 65.63732 * 11 10 9 37 37 H 1.08996 * 110.37238 * 320.84436 * 13 12 11 38 38 H 1.08999 * 110.37755 * 83.19528 * 13 12 11 39 39 H 1.07998 * 119.99553 * 0.02562 * 17 16 14 40 40 H 1.08001 * 119.99988 * 180.29428 * 18 17 16 41 41 H 1.08003 * 119.99889 * 179.76744 * 19 18 17 42 42 H 1.08003 * 120.00037 * 179.97438 * 20 19 18 43 43 H 1.07998 * 119.99938 * 359.97438 * 21 16 14 44 44 H 1.08999 * 109.42838 * 287.43769 * 24 22 14 45 45 H 1.09000 * 109.42768 * 47.26350 * 24 22 14 46 46 H 1.08999 * 109.53518 * 175.56213 * 25 24 22 47 47 H 1.09000 * 109.32161 * 55.42007 * 25 24 22 48 48 H 1.08997 * 109.23317 * 299.93691 * 26 25 24 49 49 H 1.09000 * 109.20514 * 180.54052 * 26 25 24 50 50 H 1.08998 * 108.24879 * 192.22417 * 27 26 25 51 51 H 1.09004 * 108.09580 * 75.31069 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5515 -2.6364 -0.0009 12 7 6.0413 -4.0147 -0.1368 13 6 5.6794 -4.5811 -1.4659 14 6 5.7261 -6.1120 -1.2676 15 1 6.6819 -6.5092 -1.6094 16 6 4.5897 -6.7706 -2.0064 17 6 3.2832 -6.4283 -1.7118 18 6 2.2410 -7.0286 -2.3932 19 6 2.5049 -7.9791 -3.3615 20 6 3.8111 -8.3256 -3.6521 21 6 4.8536 -7.7212 -2.9747 22 6 5.5700 -6.3245 0.2621 23 1 4.7177 -6.9665 0.4846 24 6 6.8722 -6.9485 0.7648 25 6 6.9175 -6.8786 2.2945 26 6 6.9598 -5.4144 2.7260 27 6 5.7297 -4.6767 2.2381 28 6 5.3547 -4.9171 0.8126 29 1 4.2886 -4.7052 0.7312 30 1 -0.4850 0.8400 -0.0004 31 1 3.8745 -0.6799 -0.8911 32 1 3.8751 -0.6803 0.8889 33 1 3.6586 -3.1502 0.8893 34 1 3.6579 -3.1504 -0.8907 35 1 5.9150 -2.0377 -0.8361 36 1 5.9149 -2.2124 0.9352 37 1 4.6761 -4.2660 -1.7523 38 1 6.4044 -4.2737 -2.2196 39 1 3.0770 -5.6886 -0.9524 40 1 1.2204 -6.7577 -2.1664 41 1 1.6904 -8.4508 -3.8913 42 1 4.0173 -9.0686 -4.4084 43 1 5.8742 -7.9915 -3.2021 44 1 6.9276 -7.9861 0.4358 45 1 7.7194 -6.3950 0.3598 46 1 7.8076 -7.3931 2.6567 47 1 6.0269 -7.3555 2.7039 48 1 7.8499 -4.9430 2.3095 49 1 7.0018 -5.3623 3.8140 50 1 5.8975 -3.6079 2.3713 51 1 4.8882 -4.9690 2.8663 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000485873730.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:21:08 Heat of formation + Delta-G solvation = 7.531095 kcal Electronic energy + Delta-G solvation = -27102.707905 eV Core-core repulsion = 23772.403904 eV Total energy + Delta-G solvation = -3330.304001 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.80038 -38.77304 -36.07954 -34.50743 -33.07489 -31.28289 -30.87341 -30.57178 -29.35053 -27.91004 -26.02377 -23.69902 -22.87294 -22.57085 -22.21826 -21.26927 -20.19597 -19.93642 -18.19144 -16.99583 -16.65988 -15.83986 -15.38157 -15.25932 -14.88718 -14.52558 -14.27462 -14.19339 -14.09225 -13.64315 -13.40447 -13.32630 -12.96738 -12.81390 -12.46015 -12.30004 -12.10059 -11.99132 -11.90355 -11.56698 -11.38327 -11.17277 -11.13000 -10.97946 -10.84086 -10.69643 -10.61613 -10.42709 -10.18575 -10.00627 -9.85681 -9.79058 -9.54070 -9.23940 -8.88981 -8.62117 -8.54416 -7.95165 -6.05128 -4.03044 1.36425 1.42797 3.30013 3.37491 3.41251 3.77733 4.16272 4.44600 4.52470 4.70011 4.75140 4.89576 4.91820 5.02291 5.08467 5.15396 5.18325 5.28926 5.36872 5.39844 5.42433 5.50181 5.52401 5.57979 5.63152 5.65725 5.76431 5.79884 5.84770 5.88113 5.96865 6.01175 6.02204 6.08533 6.12657 6.15285 6.22885 6.28761 6.32245 6.34626 6.44475 6.48614 6.53214 6.57907 6.65032 6.69596 6.88173 7.02541 7.11577 7.26427 7.35148 7.41750 7.78676 8.53059 8.99186 9.57743 11.08410 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.010594 B = 0.004432 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2642.438275 B = 6316.425825 C = 8184.212604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.519 4.519 8 H 0.069 0.931 9 C -0.010 4.010 10 C -0.138 4.138 11 C 0.037 3.963 12 N -0.502 5.502 13 C 0.031 3.969 14 C -0.053 4.053 15 H 0.085 0.915 16 C -0.071 4.071 17 C -0.110 4.110 18 C -0.114 4.114 19 C -0.127 4.127 20 C -0.123 4.123 21 C -0.119 4.119 22 C -0.070 4.070 23 H 0.079 0.921 24 C -0.105 4.105 25 C -0.118 4.118 26 C -0.109 4.109 27 C -0.102 4.102 28 C 0.063 3.937 29 H 0.052 0.948 30 H 0.262 0.738 31 H 0.010 0.990 32 H 0.015 0.985 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.077 0.923 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.118 0.882 44 H 0.056 0.944 45 H 0.068 0.932 46 H 0.057 0.943 47 H 0.058 0.942 48 H 0.062 0.938 49 H 0.056 0.944 50 H 0.068 0.932 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.645 -17.386 -1.539 22.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.557 4.557 8 H 0.087 0.913 9 C -0.048 4.048 10 C -0.177 4.177 11 C -0.091 4.091 12 N -0.225 5.225 13 C -0.097 4.097 14 C -0.072 4.072 15 H 0.104 0.896 16 C -0.072 4.072 17 C -0.128 4.128 18 C -0.132 4.132 19 C -0.146 4.146 20 C -0.141 4.141 21 C -0.138 4.138 22 C -0.089 4.089 23 H 0.097 0.903 24 C -0.143 4.143 25 C -0.155 4.155 26 C -0.146 4.146 27 C -0.140 4.140 28 C -0.045 4.045 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.028 0.972 32 H 0.033 0.967 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.075 0.925 45 H 0.087 0.913 46 H 0.076 0.924 47 H 0.076 0.924 48 H 0.081 0.919 49 H 0.075 0.925 50 H 0.086 0.914 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 14.083 -17.215 -1.439 22.288 hybrid contribution -0.779 1.068 -0.262 1.348 sum 13.303 -16.147 -1.701 20.990 Atomic orbital electron populations 1.69915 1.06315 1.26850 1.51273 1.25031 0.94715 0.99169 0.94570 0.86780 0.80383 0.83641 0.78497 1.20333 1.21411 1.18988 1.21135 0.89563 0.94313 1.50693 0.91287 1.19494 0.97102 0.92030 0.96132 1.22083 0.94122 1.00436 1.01049 1.22448 0.95066 0.89348 1.02201 1.65588 1.52733 1.01943 1.02212 1.23319 1.01010 0.92460 0.92877 1.21285 0.96259 0.95100 0.94512 0.89634 1.19873 0.94321 0.96553 0.96412 1.21123 0.92161 0.99618 0.99906 1.21212 0.99405 0.96449 0.96167 1.21129 0.96669 0.98358 0.98398 1.21085 0.92911 1.00154 0.99909 1.21014 0.98952 0.97134 0.96653 1.21716 0.98328 0.95813 0.93033 0.90316 1.21578 0.97448 0.99751 0.95507 1.21471 1.01230 0.96801 0.96021 1.21060 0.98670 0.95250 0.99647 1.20323 0.97982 1.01355 0.94315 1.21382 0.98257 0.91938 0.92942 0.92970 0.92780 0.97185 0.96673 0.92364 0.92664 0.91097 0.90879 0.92104 0.90468 0.85934 0.85942 0.86383 0.86423 0.86371 0.92488 0.91347 0.92394 0.92355 0.91899 0.92519 0.91355 0.92402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.08 13.96 55.43 0.77 -27.30 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.91 27.47 -169.99 -4.67 17.24 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 7 C -0.52 -14.85 9.66 -34.44 -0.33 -15.18 16 8 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 9 C -0.01 -0.23 4.04 -27.88 -0.11 -0.34 16 10 C -0.14 -2.69 4.05 -26.73 -0.11 -2.80 16 11 C 0.04 0.60 5.18 -3.82 -0.02 0.58 16 12 N -0.50 -7.12 5.54 -225.54 -1.25 -8.37 16 13 C 0.03 0.42 5.82 -1.94 -0.01 0.41 16 14 C -0.05 -0.62 2.83 -89.84 -0.25 -0.87 16 15 H 0.09 0.91 7.27 -51.93 -0.38 0.54 16 16 C -0.07 -0.87 4.74 -104.62 -0.50 -1.37 16 17 C -0.11 -1.48 8.15 -39.58 -0.32 -1.80 16 18 C -0.11 -1.45 10.05 -39.58 -0.40 -1.84 16 19 C -0.13 -1.42 10.05 -39.58 -0.40 -1.82 16 20 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 21 C -0.12 -1.31 9.68 -39.58 -0.38 -1.70 16 22 C -0.07 -0.82 2.64 -89.68 -0.24 -1.05 16 23 H 0.08 0.96 7.44 -51.93 -0.39 0.57 16 24 C -0.11 -1.08 4.93 -26.68 -0.13 -1.21 16 25 C -0.12 -1.15 5.92 -26.78 -0.16 -1.31 16 26 C -0.11 -1.17 5.95 -27.64 -0.16 -1.33 16 27 C -0.10 -1.29 5.46 -29.28 -0.16 -1.45 16 28 C 0.06 0.85 1.66 -69.15 -0.11 0.73 16 29 H 0.05 0.81 4.92 -51.93 -0.26 0.56 16 30 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 31 H 0.01 0.24 7.57 -51.93 -0.39 -0.16 16 32 H 0.01 0.36 7.20 -51.93 -0.37 -0.01 16 33 H 0.06 1.15 6.42 -51.93 -0.33 0.82 16 34 H 0.05 1.10 6.08 -51.93 -0.32 0.78 16 35 H 0.07 1.15 8.13 -51.93 -0.42 0.73 16 36 H 0.07 1.17 7.02 -51.93 -0.36 0.81 16 37 H 0.06 0.94 4.78 -51.93 -0.25 0.69 16 38 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.12 1.79 7.46 -52.49 -0.39 1.39 16 40 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 41 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 42 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 43 H 0.12 1.07 7.97 -52.49 -0.42 0.65 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.07 0.74 7.92 -51.93 -0.41 0.33 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 49 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 50 H 0.07 0.94 6.56 -51.93 -0.34 0.60 16 51 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 378.23 15.07 5.70 5.70 Total: -1.00 -30.29 378.23 -12.59 -42.88 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -8.85 Total: 2.04 kcal Atomic # 6 Polarization: -27.89 SS G_CDS: -4.30 Total: -32.19 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: -0.48 Total: -35.67 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.29 -12.59 -42.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000485873730.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.407 kcal (2) G-P(sol) polarization free energy of solvation -30.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds