Wall clock time and date at job start Tue Mar 31 2020 11:33:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17404 * 1
3 3 C 1.47205 * 179.97438 * 2 1
4 4 N 1.46496 * 109.46878 * 265.13947 * 3 2 1
5 5 C 1.36963 * 120.00215 * 263.90950 * 4 3 2
6 6 H 1.07997 * 120.00551 * 203.06716 * 5 4 3
7 7 C 1.38970 * 119.99558 * 23.07260 * 5 4 3
8 8 N 1.31422 * 120.00181 * 21.61900 * 7 5 4
9 9 Si 1.86805 * 119.99800 * 201.61297 * 7 5 4
10 10 H 1.48500 * 109.46553 * 90.00362 * 9 7 5
11 11 H 1.48502 * 109.47220 * 209.99678 * 9 7 5
12 12 H 1.48497 * 109.47043 * 330.00384 * 9 7 5
13 13 C 1.34778 * 120.00414 * 83.91661 * 4 3 2
14 14 O 1.21670 * 120.00535 * 174.41003 * 13 4 3
15 15 C 1.47060 * 119.99534 * 354.68056 * 13 4 3
16 16 N 1.33465 * 122.56418 * 357.29795 * 15 13 4
17 17 C 1.28849 * 115.89301 * 179.79396 * 16 15 13
18 18 S 1.75971 * 109.56658 * 0.44835 * 17 16 15
19 19 C 1.35304 * 122.56539 * 177.58671 * 15 13 4
20 20 Br 1.89099 * 125.48242 * 359.97438 * 19 15 13
21 21 H 4.40637 * 5.51395 * 179.97438 * 4 1 2
22 22 H 1.09000 * 109.46791 * 145.14151 * 3 2 1
23 23 H 1.08994 * 109.46911 * 25.13825 * 3 2 1
24 24 H 0.97004 * 119.99418 * 180.02562 * 8 7 5
25 25 H 1.08004 * 125.21618 * 180.19436 * 17 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6461 0.0007 0.0000
4 7 3.1343 0.1179 1.3762
5 6 3.4807 1.3444 1.8779
6 1 4.1663 1.4138 2.7094
7 6 2.9497 2.4996 1.3169
8 7 1.8339 2.4413 0.6250
9 14 3.8220 4.1355 1.5464
10 1 4.7896 4.3400 0.4386
11 1 2.8231 5.2343 1.5401
12 1 4.5466 4.1325 2.8425
13 6 3.2428 -0.9811 2.1488
14 8 3.7428 -0.9003 3.2551
15 6 2.7622 -2.2792 1.6522
16 7 2.1632 -2.4182 0.4676
17 6 1.7972 -3.6144 0.1591
18 16 2.2167 -4.7148 1.4666
19 6 2.8884 -3.4232 2.3637
20 35 3.6801 -3.5700 4.0747
21 1 -1.0500 0.0002 0.0000
22 1 3.0090 0.8441 -0.5874
23 1 3.0098 -0.9295 -0.4365
24 1 1.4635 3.2477 0.2331
25 1 1.3044 -3.8975 -0.7593
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000491644329.mol2 25
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:33:39
Heat of formation + Delta-G solvation = 106.791433 kcal
Electronic energy + Delta-G solvation = -16078.135097 eV
Core-core repulsion = 13233.436299 eV
Total energy + Delta-G solvation = -2844.698798 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 313.947 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-39.88034 -37.59516 -35.20191 -32.09044 -31.80511 -31.11846 -28.89605 -26.58888
-25.47624 -24.22999 -21.60455 -18.77102 -18.22903 -17.77841 -16.50970 -15.54902
-15.52845 -14.72005 -14.56529 -13.97574 -13.46481 -13.08039 -12.77266 -12.42922
-12.19491 -11.73456 -11.55057 -11.07984 -11.00876 -10.56883 -10.41517 -10.10059
-9.42961 -9.27907 -9.13380 -9.04390 -8.66251 -8.47614 -8.22365 -7.84560
-6.42295 -3.91993 0.63201 1.14158 1.73167 2.13844 2.52994 3.16037
3.21789 3.26641 3.88473 4.14083 4.23042 4.36609 4.46393 5.01505
5.04537 5.36413 5.69695 5.72764 6.12952 6.67021 6.78648 7.19625
7.45820 7.67500 8.01107 8.36285 9.03873 9.06633 9.24703 9.85521
10.54807
Molecular weight = 313.95amu
Principal moments of inertia in cm(-1)
A = 0.020327 B = 0.006337 C = 0.005023
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1377.177541 B = 4417.137322 C = 5572.971925
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.281 4.281
2 C -0.077 4.077
3 C 0.232 3.768
4 N -0.407 5.407
5 C -0.309 4.309
6 H 0.109 0.891
7 C 0.035 3.965
8 N -0.839 5.839
9 Si 0.925 3.075
10 H -0.275 1.275
11 H -0.284 1.284
12 H -0.267 1.267
13 C 0.491 3.509
14 O -0.559 6.559
15 C 0.074 3.926
16 N -0.418 5.418
17 C 0.044 3.956
18 S 0.135 5.865
19 C -0.228 4.228
20 Br 0.047 6.953
21 H 0.193 0.807
22 H 0.090 0.910
23 H 0.089 0.911
24 H 0.272 0.728
25 H 0.207 0.793
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.140 -13.103 -1.946 13.248
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.300 4.300
2 C -0.078 4.078
3 C 0.109 3.891
4 N -0.123 5.123
5 C -0.437 4.437
6 H 0.126 0.874
7 C -0.173 4.173
8 N -0.474 5.474
9 Si 0.751 3.249
10 H -0.201 1.201
11 H -0.209 1.209
12 H -0.191 1.191
13 C 0.278 3.722
14 O -0.442 6.442
15 C -0.062 4.062
16 N -0.132 5.132
17 C -0.257 4.257
18 S 0.386 5.614
19 C -0.431 4.431
20 Br 0.130 6.870
21 H 0.210 0.790
22 H 0.108 0.892
23 H 0.106 0.894
24 H 0.082 0.918
25 H 0.224 0.776
Dipole moment (debyes) X Y Z Total
from point charges 0.082 -13.550 -1.081 13.593
hybrid contribution -0.141 1.734 -0.170 1.748
sum -0.059 -11.816 -1.250 11.882
Atomic orbital electron populations
1.24021 0.95146 1.08351 1.02475 1.22700 0.93811 0.93438 0.97886
1.18508 0.85004 1.01058 0.84501 1.43655 1.52763 1.06101 1.09734
1.19782 1.25101 0.80691 1.18131 0.87376 1.25462 0.94727 1.00008
0.97103 1.70139 1.14886 1.30026 1.32343 0.85950 0.79104 0.80610
0.79282 1.20083 1.20922 1.19101 1.16887 0.87409 0.82324 0.85630
1.90736 1.49171 1.84386 1.19952 1.21006 0.99467 0.96379 0.89368
1.67678 1.10660 1.20185 1.14629 1.29599 1.03169 0.90274 1.02674
1.83634 1.53768 1.12167 1.11784 1.26601 1.14388 0.99290 1.02866
1.96658 1.79797 1.97267 1.13239 0.79024 0.89171 0.89384 0.91766
0.77634
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 31.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.28 -6.13 19.25 29.55 0.57 -5.56 15
2 C -0.08 -1.78 9.45 -37.12 -0.35 -2.14 15
3 C 0.23 5.39 4.76 -6.83 -0.03 5.36 15
4 N -0.41 -10.60 2.58 -119.29 -0.31 -10.90 15
5 C -0.31 -8.45 9.23 -14.99 -0.14 -8.59 15
6 H 0.11 3.07 7.44 -52.49 -0.39 2.68 15
7 C 0.03 0.89 4.81 -17.46 -0.08 0.81 15
8 N -0.84 -21.95 9.71 55.50 0.54 -21.41 15
9 Si 0.92 20.06 29.60 -169.99 -5.03 15.03 15
10 H -0.28 -5.82 7.11 56.52 0.40 -5.41 15
11 H -0.28 -6.12 7.11 56.52 0.40 -5.72 15
12 H -0.27 -5.84 7.11 56.52 0.40 -5.43 15
13 C 0.49 12.54 7.53 -12.68 -0.10 12.45 15
14 O -0.56 -15.35 14.14 5.22 0.07 -15.27 15
15 C 0.07 1.58 6.40 -84.63 -0.54 1.04 15
16 N -0.42 -7.72 5.48 -11.09 -0.06 -7.78 15
17 C 0.04 0.60 12.47 51.51 0.64 1.24 15
18 S 0.14 1.79 23.19 -107.50 -2.49 -0.71 15
19 C -0.23 -4.22 6.82 29.69 0.20 -4.02 15
20 Br 0.05 0.85 31.63 -68.01 -2.15 -1.30 15
21 H 0.19 3.51 7.80 -54.09 -0.42 3.09 15
22 H 0.09 2.15 6.84 -51.93 -0.36 1.79 15
23 H 0.09 1.85 5.75 -51.93 -0.30 1.55 15
24 H 0.27 6.75 8.31 -40.82 -0.34 6.41 15
25 H 0.21 1.84 8.06 -52.48 -0.42 1.41 15
LS Contribution 262.58 15.07 3.96 3.96
Total: -1.00 -31.10 262.58 -6.33 -37.43
By element:
Atomic # 1 Polarization: 1.40 SS G_CDS: -1.02 Total: 0.37 kcal
Atomic # 6 Polarization: 0.41 SS G_CDS: 0.17 Total: 0.58 kcal
Atomic # 7 Polarization: -40.27 SS G_CDS: 0.17 Total: -40.10 kcal
Atomic # 8 Polarization: -15.35 SS G_CDS: 0.07 Total: -15.27 kcal
Atomic # 14 Polarization: 20.06 SS G_CDS: -5.03 Total: 15.03 kcal
Atomic # 16 Polarization: 1.79 SS G_CDS: -2.49 Total: -0.71 kcal
Atomic # 35 Polarization: 0.85 SS G_CDS: -2.15 Total: -1.30 kcal
Total LS contribution 3.96 Total: 3.96 kcal
Total: -31.10 -6.33 -37.43 kcal
The number of atoms in the molecule is 25
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000491644329.mol2 25
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 144.224 kcal
(2) G-P(sol) polarization free energy of solvation -31.105 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.120 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.328 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.433 kcal
(6) G-S(sol) free energy of system = (1) + (5) 106.791 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds